BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481640 Length=1259 Score E Sequences producing significant alignments: (Bits) Value AT2G27420.1 | Symbols: | Cysteine proteinases superfamily prot... 1901 0.0 AT2G27395.1 | Symbols: | pseudogene of cysteine protease-relat... 335 7e-91 > AT2G27420.1 | Symbols: | Cysteine proteinases superfamily protein | chr2:11726144-11727614 REVERSE LENGTH=1309 Length=1309 Score = 1901 bits (1029), Expect = 0.0 Identities = 1176/1245 (94%), Gaps = 17/1245 (1%) Strand=Plus/Plus Query 1 AACCAAAACATTTGTATTAAAAGAGTATTTTTATTGATACTATATTTAAATTGTGCCCAT 60 ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 18 AACCAAAACATTTGTATTATAAGAGTATTTTTATTGATACTATTTTTAAATTGTGCCCA- 76 Query 61 TCATTTCCATACTATTACCTCTA-GGAATGTCGTCAACTATCATCTTCATTCTAACTAtt 119 | | | | |||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct 77 T-A----C--A-TATTACCTATAGGGAATGGCGTCAACTATCATCTTCATTCTAACTATT 128 Query 120 tttttGAGTTACAGAACTTCGCTAGTTACATCTCGTGGTGGCCTTTTTGAAGCTTCTGCC 179 ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 129 TTTTTAAGTTACAGAACTTCGCTAGCTACATCTCGTGGTAGCCTTTTTGAAGCTTCTGCC 188 Query 180 ATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTACTCTGACGAATCCGAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 189 ATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTACTCTGACGAAACCGAG 248 Query 240 AAAAGAAATCGGTTCGATATCTTCAAGAAGAATTTGGAGTTCGTCCAGAGCTTCAACATG 299 |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 249 AAAAGAAATCGGTTTAATATCTTCAAGAAGAATTTGGAGTTCGTCCAGAACTTCAACATG 308 Query 300 AATAAGAACATCACGTACAA-GTTGGATGTCAACGAGTTCTCTGATCTCACTGACGAAGA 358 ||||| || ||||||||||| ||| ||| ||||||||||||||||||| || |||||||| Sbjct 309 AATAATAAAATCACGTACAAGGTT-GATATCAACGAGTTCTCTGATCTTACGGACGAAGA 367 Query 359 ATTTCGGGCGACACACACTGGACTAGTTGTGCCCGAGGAAATAA-CAGGAATTTCAACTC 417 |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| Sbjct 368 ATTTCGGGCGACACACACTGGACTAGTTGTGCCCGAGGCTATAACCA-GAATTTCAACTC 426 Query 418 TGTCTTC-GG-ATAAA-ACGGTGCCGTTTAGATATCGTAATGTTAGTGATACTGGCGAAA 474 ||||||| || | ||| |||||||||||||||||| ||||||||||||||| |||||| | Sbjct 427 TGTCTTCGGGCAAAAACACGGTGCCGTTTAGATATGGTAATGTTAGTGATAATGGCGAGA 486 Query 475 GCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAAGTATCAAGGCCGATGTGGAG 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 GCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAAGTATCAAGGCCGATGTGGAG 546 Query 535 GATGCTGGGCGTTTTCTGCGGTGGCGGCGGTGGAAGGCATTACAAAGATTACTAAAGGCG 594 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 547 GATGCTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCATTACAAAGATTACTAAAGGCG 606 Query 595 AGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGTGACAGAGACTACAATCAAGGAT 654 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 607 AGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGCGACAGAGACTACAATCAAGGAT 666 Query 655 GTCATGGAGGGATAATGTCTAAAGCTTTCGAGTACATAATCAAAAACCAAGGCATCACTA 714 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 667 GTCGTGGAGGGATAATGTCGAAAGCTTTCGAGTACATAATCAAAAACCAAGGCATCACTA 726 Query 715 CTGAGGATAACTATCCATATCAAGAATCACAACAAACTTGTAGTTCTTCAACTACCCTAT 774 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 727 CTGAGGATAACTATCCATACCAAGAATCACAACAAACTTGTAGTTCATCAACTACCCTAT 786 Query 775 CATCGTCTTTCCGTGCTGCTACAATCAGCGGATATGAGACAGTTCCAATGAATAATGAGG 834 |||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 787 CATCGTCTTTTCGTGCAGCCACAATCAGCGGATATGAGACCGTTCCAATGAATAATGAGG 846 Query 835 AAGCGTTGCTACAAGCGGTGTCTCAACAGCCTGTTTCCGTGGGGATAGAAGGGACAGGAG 894 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 847 AAGCGTTGCTACAAGCAGTGTCTCAACAGCCTGTTTCTGTGGGGATAGAAGGGACAGGGG 906 Query 895 CCGCGTTTAGGCACTACTCGGGCGGGATATTCAATGGAGAATGTGGGACGGATTTGCATC 954 |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| Sbjct 907 CCGCGTTTAGGCACTACTCGGGAGGGGTATTCAACGGAGAATGTGGGACGGATTTGCATC 966 Query 955 ATGCGGTCACGATTGTTGGTTATGGTATGAGTGAAGAAGGGACTAAGTATTGGGTGGTGA 1014 ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 967 ATGCGGTTACAATTGTTGGTTATGGAATGAGTGAAGAAGGGACTAAGTATTGGGTGGTGA 1026 Query 1015 AGAATTCTTGGGGGGAAACTTGGGGAGAGGATGGTTTCATGAGGATCAAGAGAGACGTGG 1074 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 1027 AGAATTCTTGGGGGGAAACTTGGGGAGAAAATGGTTACATGAGGATCAAGAGAGACGTGG 1086 Query 1075 ATGCACCCCAAGGAATGTGTGGTTTGGCCATGCTTGCTTTCTATCCACTTGCTTGAATAC 1134 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1087 ATGCACCCCAAGGAATGTGTGGTTTGGCCATTCTTGCTTTCTATCCACTTGCTTGAATAC 1146 Query 1135 ATGAAGATTGATTGGGTGGGCTTGAAGTAATTGAAAATACGCTGATCAAAATGTTATTTT 1194 ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| Sbjct 1147 ATGAAGATTGATTGGGTGGGCTTGAAGTAGTTGAAAGTATTCTGATCAAAATGTTATTTT 1206 Query 1195 AAGAAACATTATGGTCCCCATGTTTTTGTGCAAATGGATTGATAT 1239 ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1207 GAGAAACATTATGGTCCCCATGTTTTCGTGCAAATGGATTGATAT 1251 > AT2G27395.1 | Symbols: | pseudogene of cysteine protease-related | chr2:11721051-11721324 REVERSE LENGTH=274 Length=274 Score = 335 bits (181), Expect = 7e-91 Identities = 244/272 (90%), Gaps = 13/272 (5%) Strand=Plus/Plus Query 822 ATGAATAATGAGGAAGCGTTGCTACAAGCGGTGTCTCAACAGCCTGTTTCCGTGGGGATA 881 ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| Sbjct 1 ATGAATAATGAGGAAGCGTTGGTACAAGCGGTGTCTCAACATCCTGTTTCCATGGGGATA 60 Query 882 GAAGGGACAGGAGCCGCGTTTAGGCACTACTCGGGCGGGATATTCAATGGAGAATGTGGG 941 || ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| | Sbjct 61 GAGGGGACAGGAGCTGCGTTTAGGCACTACTCGGGAGGGATATTCAACGGAGAATGTGAG 120 Query 942 ACGGA-TTTGCATCATGCGGTCACGATTGTTGGTTATGGTATGAGTGAAGAAGGGACTAA 1000 ||||| ||||||||||||||| || ||||||||||||| |||||||||||||| ||||| Sbjct 121 ACGGATTTTGCATCATGCGGTTACAATTGTTGGTTATGAAATGAGTGAAGAAGGAACTAA 180 Query 1001 GTATTGGGTGGTGAAGAATTCTTGGGGGGAAACTTGGGGAGAGGATGGTTTCATGAGGAT 1060 ||||||| ||||||||||||||| |||| | || | |||||||||||||||| Sbjct 181 GTATTGGATGGTGAAGAATTCTT--GGGG--A------GA-A-AATGGTTTCATGAGGAT 228 Query 1061 CAAGAGAGACGTGGATGCACCCCAAGGAATGT 1092 |||||||||||||||||||||||||||||||| Sbjct 229 CAAGAGAGACGTGGATGCACCCCAAGGAATGT 260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61897271985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5