BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481665
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28400.1 | Symbols: | Protein of unknown function, DUF584 |... 1088 0.0
AT5G60680.1 | Symbols: | Protein of unknown function, DUF584 |... 130 2e-29
> AT2G28400.1 | Symbols: | Protein of unknown function, DUF584
| chr2:12148304-12149052 REVERSE LENGTH=749
Length=749
Score = 1088 bits (589), Expect = 0.0
Identities = 688/733 (94%), Gaps = 17/733 (2%)
Strand=Plus/Plus
Query 35 TTCATTTCTTCTCCTTCTTCAAATGGCGACGAGCAAGTGCTACTATCCACGGCCAAGCCA 94
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 30 TTCATTTCTTCTTCTTCTTGAAATGGCGACGAGCAAGTGCTACTATCCACGGCCAAGCCA 89
Query 95 CCGTTTCTTCACCACAGACCAACACGTCACCGCCGCTTCCGATTTCGAGCTAGACGAATG 154
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 90 CCGTTTCTTCACCACTGACCAACACGTCACCGCCACTTCCGATTTCGAGCTAGACGAATG 149
Query 155 GGAACTTTACAATACCGGTTCAGATTCAC-CTTCAAATTTCAGCTTTAGTGATCTTACAA 213
||| |||| |||||||||||||||||| | |||||| ||||||||||||||| |||||||
Sbjct 150 GGATCTTTTCAATACCGGTTCAGATTC-CTCTTCAAGTTTCAGCTTTAGTGACCTTACAA 208
Query 214 TCACATCCGGTCGAACCGGAACTAACCGGAAAATTCACGGTGGTTCTGGTTCCGGTTCCG 273
||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||
Sbjct 209 TCACATCCGGTCGAACCGGAACTAACCGGCAAATTCACGGTGGTTCT-G--AC---TCCG 262
Query 274 GTACAGCTGCGTCTTCGCTTCCGGTTAACGTACCGGACTGGTCTAAGATTCTTGGAGATG 333
||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 263 GTAAAGCTGCGTCTTCTCTACCGGTTAACGTACCGGACTGGTCTAAGATTCTTGGAGACG 322
Query 334 AGAGTCGACGACAGA-GACAGATTTCGAATGAGGAAGAAGTCGACGGAGATGAAATTTCA 392
||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| |
Sbjct 323 AGAGTCGACGACAGAGGA-AGATTTCGAATGAGGAAGAAGTTGACGGAGATGAAATTTTA 381
Query 393 TGCGGCGGAGGAACACGGCGTGTTCCGCCGCATGAATTGCTTGCGAACCGGAGGATGGCT 452
||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 382 TGCGGCGAAGGTACACGGCGAGTTCCACCGCATGAATTGCTTGCGAACCGGAGGATGGCT 441
Query 453 TCATTTTCGGTTCATGAAGGTGCTGGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTG 512
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 442 TCGTTTTCGGTTCATGAAGGTGCTGGGAGGACTTTGAAAGGAAGAGATCTGAGTAGGGTG 501
Query 513 CGAAATACTATTTTTAAAATTAGAGGGATCGAAGATTAATTATCTTTTGGGTACTTCTTT 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CGAAATACTATTTTTAAAATTAGAGGGATCGAAGATTAATTATCTTTTGGGTACTTCTTT 561
Query 573 TAA-TCTTTGTTTAAATTGGGGGTTACATATAGAAATATGAGGGGCTTAAATCGAAATTT 631
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 562 TAAATCTTTGTTTAAATTGGGGGTTACATATAGAAATATGAGGAGCTTAAATCGAAATTT 621
Query 632 GTAAGAGCTGttttttttttGGAATTATTTTAGTTTCTGGATTCGCATTTCGTCtttttt 691
|||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||
Sbjct 622 GTAAGAGCTGTTTTTTTT--GGAATTATTTTAGTTTCTGGATTCACATTAAGTGTTTTTT 679
Query 692 ttA-CTTAAAAAGATTGTATTGAAATTTTGAGACACCAAATATGAAAATTGACTTGGTAT 750
||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TTAACTTGA---GATTGTATTGAAATTTTGAGACACCAAATATGAAAATTGACTTGGTAT 736
Query 751 TTCTTTTATAATT 763
|||||||||||||
Sbjct 737 TTCTTTTATAATT 749
> AT5G60680.1 | Symbols: | Protein of unknown function, DUF584
| chr5:24386145-24386976 FORWARD LENGTH=832
Length=832
Score = 130 bits (70), Expect = 2e-29
Identities = 123/147 (84%), Gaps = 9/147 (6%)
Strand=Plus/Plus
Query 414 GTT-CCGCCGCATGAATTGCTTGCGAA-CCGGAGGATGGCTTCATTTTCGGTTCATGAAG 471
||| ||||||||||| || || ||||| | ||| |||||||| || |||||||||||||
Sbjct 456 GTTACCGCCGCATGAGTTTCTGGCGAAGAC-GAGAATGGCTTCGTTCTCGGTTCATGAAG 514
Query 472 GTGCT-GGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTGCGAAATACTATTTTT-AA 529
| | | ||||||||||||||||||||||||||||||||||| |||||| | |||||| ||
Sbjct 515 GAG-TAGGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTTCGAAATGCAATTTTTGAA 573
Query 530 AA-TTAGAGGGATCGAAGATTAATTAT 555
|| || | || || |||||||| |||
Sbjct 574 AAATTTG-GGT-TCCAAGATTAAATAT 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5