BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481668
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28370.1 | Symbols: | Uncharacterised protein family (UPF04... 1389 0.0
> AT2G28370.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr2:12131554-12133704 FORWARD LENGTH=1121
Length=1121
Score = 1389 bits (752), Expect = 0.0
Identities = 906/977 (93%), Gaps = 24/977 (2%)
Strand=Plus/Plus
Query 1 AAAACCATTTCCACGAtcttcttcttcttcttcCCTCAAATATAGCTTAGG-GTTTCTTA 59
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 84 AAAACCATTTCCACGATCTTCTTCTTCTTCTTCCCTCAAATATAGCTTAGGATTTTCTTA 143
Query 60 ATTTCCTCTACCCAAGCTCTCCATGGCTGCTCGCAATTTCTTCCTCTCTTCTTGATTCTC 119
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 144 ATTTCCTCTACCCAAG--CTCCATGGCTGCTTTCAATTTCTTCCTCTCTTCTTAATTCTC 201
Query 120 TCAGGTAGGGGAGATTTGAGTACTACTAGATTATTGGATTTGGATTTCAGCTATTGGT-A 178
|||||||||||||||||||||| || |||||| || |||||| | ||||||||||||| |
Sbjct 202 TCAGGTAGGGGAGATTTGAGTAGTAGTAGATTGTTAGATTTGTAATTCAGCTATTGGTGA 261
Query 179 A-A-G-A-GG-GAGAGAGATGTGTTGAATTGGTTGTGTTTGGTGGA-G---G-A-AAGAA 227
| | | | || |||||||||||||||||||||||| |||||||||| | | | |||||
Sbjct 262 AGAGGAAGGGAGAGAGAGATGTGTTGAATTGGTTGAGTTTGGTGGAGGAAAGAAGAAGAA 321
Query 228 GAAATGAATGTGAGCCATGCATCGGTTCATCCGGTTGAAGA---TCC-GC--CTGCTACG 281
|||||||||||||||||||||||||| ||||| || ||||| ||| || |||| |||
Sbjct 322 GAAATGAATGTGAGCCATGCATCGGTACATCCAGTGGAAGATCCTCCTGCAGCTGCGACG 381
Query 282 GAAGTTGATAATCCGCCACGGGTGAGGATGGATGATATGGAAGGCATGCCTGGAACTTTG 341
||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 382 GAAGTAGAGAATCCGCCTCGGGTGAGGATGGATGATATGGAAGGAATGCCTGGAACATTG 441
Query 342 CTTGGGCTTGCATTGCGtttttttCAGTTCTTGTTTGCAGCTGCTGCGCTTTGTGTCATG 401
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 442 CTTGGTCTTGCATTGCGTTTTTTTCAGTTCTTGTTTGCTGCTGCTGCTCTTTGTGTCATG 501
Query 402 GCTACTACTAGTGATTTCCCTTCCGTTACCGCCTTCTGTTACCTAGTTGCAGCCACTGGC 461
||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 502 GCTTCTACTAGTGATTTTCCTTCCGTTACCGCCTTCTGCTACCTAGTTGCAGCTACTGGT 561
Query 462 CTGCAGAGCTTGTGGAGTCTTGCACTAGCCATGGTTGACGTCTATGCCATTATGGTCAAA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CTGCAGAGCTTGTGGAGTCTTGCACTAGCCATGGTTGACGTCTATGCCATTATGGTCAAA 621
Query 522 CGTTCCCTACAGAACCGTCGACTTGTGAGCTTGTTTGCGATTGGTGATGGGGTGACATCA 581
|| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 622 CGCTCTCTACAGAACCGTCGACTTGTGAGCTTGTTTGCAATTGGTGATGGGGTGACATCG 681
Query 582 ACGCTGACTTTTGCAGCAGCTTGTGCATCGGCAGGCATAACGGTTCTAATAGACAACGAT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ACGCTGACTTTTGCAGCAGCTTGTGCATCGGCAGGCATAACGGTTCTAATAGACAACGAT 741
Query 642 CTGAATAGCTGCGCACAAAACCATTGTGTTCAGTTTGAAACATCAACAGCATTAGCTTTC 701
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 742 CTGAATAGCTGCGCACAAAACCACTGTGTTCAGTTTGAAACATCAACGGCATTAGCTTTC 801
Query 702 ATAAGCTGGTTTGCTGCTTTGCCCTCTTTTCTCTTCAACTTCTGGTCTCTTGCATCCCGT 761
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 802 ATAAGCTGGTTCGCTGCTTTGCCTTCGTTTCTCTTCAATTTCTGGTCTCTTGCATCCCGT 861
Query 762 TGACATGACACTGTTCCGCAAGATGTGTTTTCATGGTGTTTATTTTCGGTGTATAGTGAC 821
||||| || |||| || |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 862 TGACACGATACTGCTCAGCAAGATGTGTTTTCATGGTGTGT-TTTTCGGTGTATAGTGAC 920
Query 822 TGATTTATCTTCTTCTTTCTTGTTTTGGGTTTGGAACCAACTTTCTTCAAACCCAATACT 881
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TGATTTTTCTTCTTCTTTCTTGTTTTGGGTTTGGAACCAACTTTCTTCAAACCCAATACT 980
Query 882 GGGAAACTGGGAATTGTTTTGTAGACGACGACCTTATTCATTTTGTTGTACAATGACAAG 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 981 TGGAAACTGGGAATTGTTTTGTAGACGACGACCTTATTCATTTTGTTGTACAATGA-AAC 1039
Query 942 -ATTTGGTCGGCTTTGT 957
|| |||||||||||||
Sbjct 1040 TATCTGGTCGGCTTTGT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5