BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481671
Length=2220
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28350.1 | Symbols: ARF10 | auxin response factor 10 | chr2:... 3121 0.0
> AT2G28350.1 | Symbols: ARF10 | auxin response factor 10 | chr2:12114331-12116848
FORWARD LENGTH=2265
Length=2265
Score = 3121 bits (1690), Expect = 0.0
Identities = 1976/2109 (94%), Gaps = 40/2109 (2%)
Strand=Plus/Plus
Query 1 ATGGAGCAAGAGAAAAGCTTGGATCCACAACTATGGCATGCTTGTGCTGGATCAATGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGCAAGAGAAAAGCTTGGATCCACAACTATGGCATGCTTGTGCAGGATCAATGGTT 60
Query 61 CAAATCCCTTCTGTGAATTCAACGGTTTTTTACTTCGCCCAAGGTCACACAGAGCATGCT 120
||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 61 CAAATCCCTTCACTGAATTCAACGGTTTTTTACTTCGCTCAAGGCCACACAGAGCACGCT 120
Query 121 CACGCGCCTCCTGATTTCCACGCGCCGCGCGTTCCACCGCTTATCCTCTGTCGTGTCGTC 180
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CACGCGCCTCCTGATTTTCACGCGCCGCGCGTTCCACCTCTTATCCTCTGTCGTGTCGTC 180
Query 181 TCTGTGAAGTTCCTCGCCGACGCTGAAACAGACGAAGTTTTCGCTAAAATTACGCTTTTG 240
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TCCGTGAAGTTCCTCGCCGACGCTGAAACAGACGAAGTTTTTGCTAAAATTACGCTTTTG 240
Query 241 CCACTACCGGGAAACGACTTGGATCTAGAGAACGACGCCGTTTTGGGTCTGACTCCTCCG 300
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 241 CCACTTCCGGGAAACGACTTGGATCTAGAAAACGACGCCGTTTTGGGTCTAACTCCTCCT 300
Query 301 TCTTCTGACGTTAACGTTAACGGTAACGGTAACGAGAAACCGGCGTCTTTTGCTAAAACG 360
|||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 301 TCTTCTGACG-----G-TAACGGTAACGGTAAAGAGAAACCGGCGTCTTTCGCTAAAACG 354
Query 361 TTAACGCAGTCTGACGCTAATAACGGCGGTGGTTTCTCTGTTCCACGTTATTGCGCTGAG 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 355 TTAACGCAGTCTGACGCTAATAACGGCGGTGGTTTCTCCGTTCCACGTTATTGCGCCGAG 414
Query 421 ACGATTTTCCCGCGGCTTGATTACACGGCGGAGCCACCGGTTCAAACCGTGATTGCTAAA 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 415 ACGATTTTCCCGCGGCTTGATTACTCGGCGGAGCCACCGGTTCAAACCGTGATTGCTAAA 474
Query 481 GATATTCACGGCGAGACTTGGAAATTCCGGCATATTTACAGAGGAACGCCTCGCCGTCAT 540
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 GACATCCACGGCGAGACTTGGAAATTCCGGCATATTTACAGAGGAACACCTCGCCGTCAT 534
Query 541 CTCTTAACCACCGGTTGGAGCACTTTCGTTAACCAAAAGAAACTAATCGCCGGGGATTCA 600
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 535 CTCCTAACCACCGGTTGGAGCACTTTCGTTAACCAGAAGAAACTAATCGCCGGAGACTCA 594
Query 601 ATCGTTTTCCTCCGTTCTGAATCCGGTGACCTCTGCGTTGGAATCCGTCGTGCTAAACGC 660
||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 595 ATCGTCTTCCTCCGTTCTGAATCCGGTGACCTCTGCGTCGGAATCCGCCGCGCTAAACGC 654
Query 661 GGTGGTCTCGGATCTACCGGGCTAGGATCCGACAATCCTTACCCTGGATTCTCCGGTTTC 720
|| ||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 655 GGCGGTCTCGGATCTAAC--GC-AGGATCCGACAATCCTTACCCTGGATTCTCCGGTTTC 711
Query 721 CTCCGTGACGATGA---AACATCAACAACATCGAAGCTTATGATGATGAAACGCAACGG- 776
||||||||||| || |||| |||||||||||||||| ||||||||||||||||||||
Sbjct 712 CTCCGTGACGACGAGTCAACAACAACAACATCGAAGCTAATGATGATGAAACGCAACGGA 771
Query 777 -A-AACGACGGAAACGCGGCGGCTGGAGGGAGGGTTAGAGTGGAAGCAGTGGCGGAAGCG 834
| |||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||
Sbjct 772 AACAACGACGGAAACGCCGCGGCTACAGGGAGGGTTAGAGTAGAAGCAGTAGCGGAAGCG 831
Query 835 GTGGCGCGTGCAGCGTGTGGACAAGCGTTTGAGGTTGTTTATTATCCACGCGCTAGTACA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GTGGCGCGTGCAGCGTGTGGACAAGCGTTTGAGGTTGTTTATTATCCACGCGCTAGTACA 891
Query 895 CCGGAGTTTTGCGTTAAAGCAGCTGATGTGAGATCAGCAATGAGGATAAGATGGTGTAGT 954
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 892 CCGGAGTTTTGCGTAAAAGCAGCTGATGTTAGATCAGCAATGAGGATAAGATGGTGTAGT 951
Query 955 GGTATGCGTTTTAAAATGGCGTTTGAAACAGAGGATTCTTCAAGAATCAGTTGGTTTATG 1014
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 952 GGTATGCGTTTTAAAATGGCGTTTGAAACAGAGGATTCTTCTAGAATCAGTTGGTTTATG 1011
Query 1015 GGTACTGTCTCCGCCGTTCAAGTCGCTGATCCTATTCGTTGGCCTAATTCACCATGGCGT 1074
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1012 GGTACTGTCTCCGCCGTTCAAGTCGCTGATCCAATTCGTTGGCCTAATTCACCATGGCGT 1071
Query 1075 CTCCTTCAGGTAGCGTGGGACGAACCGGATTTGTTGCAAAATGTTAAGCGGGTAAGTCCG 1134
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1072 CTCCTTCAGGTAGCTTGGGACGAACCGGATTTGTTACAAAACGTTAAGCGGGTTAGTCCG 1131
Query 1135 TGGTTAGTCGAATTGGTATCGAACATGCCTGCAATCCATTTATCTCCTTTCTCTCCGAGG 1194
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 1132 TGGTTAGTCGAATTGGTATCGAACATGCCTACAATACATTTATCTCCATTCTCTCCGAGG 1191
Query 1195 AAGAAGATTCGAATACCGCAGCCTTTTGAATTTCCTTTCGACGGTACCAAATTCCCGATT 1254
||||||||| | || |||||||| ||||| ||||| ||| ||||||| ||||||||||||
Sbjct 1192 AAGAAGATTAGGATTCCGCAGCCATTTGAGTTTCCATTCCACGGTACTAAATTCCCGATT 1251
Query 1255 TTCTCCCCGGGATTCGCCAACAATGGCGGTGGCGAATCCATGTGTTATCTGTCAAACGAC 1314
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1252 TTCTCCCCGGGATTCGCCAACAATGGCGGTGGCGAGTCCATGTGTTATCTGTCAAACGAC 1311
Query 1315 AACAATAATGCTCCTGCAGGGATACAGGGAGCCAGGCAAGCTCAACAACTCTTCGGATCA 1374
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AACAATAATGCTCCTGCAGGAATACAGGGAGCCAGGCAAGCTCAACAACTCTTCGGATCA 1371
Query 1375 CCATCTCCGTCTTTGTTGTCTGATCTCAATCTTAGTAGTTACTCCGGTAACAA---GTTA 1431
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1372 CCATCTCCGTCTTTGTTGTCTGATCTCAATCTTAGTAGTTACACCGGTAACAACAAGTTA 1431
Query 1432 CAATCTCCGGCGATGTTTCTGTCCG-GTTTTAACCCGAGGCATCATTATGATAACATTGT 1490
|| ||||||||||||||||| || | |||| ||||||||||||||| || || || |
Sbjct 1432 CATTCTCCGGCGATGTTTCTATC-GAGTTTCAACCCGAGGCATCATCATTAT--CA--G- 1485
Query 1491 GTCTCGTCAGACTAGGGATACTGAGAATAGTAATAACATTTCGTGCTCTTTAACGATGGG 1550
| || || || ||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 1486 G-CT----AG----GG-ATAGTGAGAATAGTAATAACATTTCGTGTTCTTTAACTATGGG 1535
Query 1551 GAATCCTGCTATGGTTCAGGACAAGAAGAAGTCTGGTGGTTCGGTTAAGACTCATCAGTT 1610
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1536 GAATCCTGCTATGGTTCAGGATAAGAAGAAGTCTGTTGGTTCGGTTAAGACTCATCAGTT 1595
Query 1611 CTTGTTGTTCGGCCAACCTATTTTAACCGAACAACAAGTTATGAACCGAAAACGGTCTTT 1670
| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 1596 CGTGTTGTTCGGTCAACCGATTTTAACCGAACAGCAAGTTATGAACCGAAAACGGTTTTT 1655
Query 1671 GGAAGAAGAGGCGGAAGCGCAGGAGGAGAAAGGTTTAGCGGCTCGTGGATTAACATGGAA 1730
||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||
Sbjct 1656 GGAAGAAGAGGCGGAAGCGGAGGAGGAGAAAGGTTTAGTGGCTCGTGGGTTAACATGGAA 1715
Query 1731 TTACGGTTTTCAGGGACTTGAAACGGGTCATTGCAAAGTTTTCATGGAATCTGAGGATGT 1790
||| |||| || |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1716 TTATAGTTTGCAAGGACTTGAGACGGGTCATTGTAAAGTTTTCATGGAATCTGAGGATGT 1775
Query 1791 TGGACGCACACTCGATCTCTCGGTTATTGGCTCGTACCAAGAATTGTACCGGAAATTGGC 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 TGGACGCACACTCGATCTCTCGGTTATTGGCTCGTACCAAGAATTGTACCGGAAATTGGC 1835
Query 1851 TGAGATGTTTCATATAGAAGAGAGGTCGGATTTGTTGACTCATGTTGTGTACCGGGACGC 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1836 TGAGATGTTTCATATAGAAGAGAGGTCGGATTTGTTGACTCATGTTGTGTACCGGGATGC 1895
Query 1911 AAATGGTGCTATCAAACGCATTGGAGACGAACCTTTCAGTGATTTCATGAAATCAAC-AA 1969
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1896 AAATGGTGTTATCAAACGTATTGGAGACGAACCTTTCAGTGATTTCATGAAAGCAACTAA 1955
Query 1970 AGCGGCTAACAATCAAGATGGATATTGGTGGCGACAACGTGAGGAAGACGTGGATAACCG 2029
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1956 A-CGGCTAACAATCAAGATGGATATTGGTGGCGACAACGTGAGAAAGACGTGGATAACCG 2014
Query 2030 GAATCAGGACTGGTGAAAATGGTATAGACGCTAC-A--AAGACCGGTCCGCTCAGCATCT 2086
|||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||
Sbjct 2015 GAATCAGGACTGGTGAAAATGGTATAGACGCTTCTACGAAGACTGGTCCGCTCAGCATCT 2074
Query 2087 TCGCTTGAA 2095
|||||||||
Sbjct 2075 TCGCTTGAA 2083
Score = 99.0 bits (53), Expect = 2e-19
Identities = 95/113 (84%), Gaps = 11/113 (10%)
Strand=Plus/Plus
Query 2096 AGTGGCCTTTGTTTTGAACCTAATTTTATTTC---CTGT----Ct-ttttttCC-TATTT 2146
|||||||||||||||||||||||||||||||| || | || |||||||| |||||
Sbjct 2108 AGTGGCCTTTGTTTTGAACCTAATTTTATTTCTGTCTTTAATTCTCTTTTTTCCCTATTT 2167
Query 2147 TAAATCCGTTTTGT--TGGTCTTTTGTGTGTAACAGACTATTTCCAAGTTTTA 2197
||||||| |||| | ||||||||||||||||||| || ||| |||||| |||
Sbjct 2168 TAAATCCTTTTTTTGCTGGTCTTTTGTGTGTAACAAACCATTCCCAAGTGTTA 2220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110139995730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5