BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481677 Length=1051 Score E Sequences producing significant alignments: (Bits) Value AT2G28305.1 | Symbols: LOG1, ATLOG1 | Putative lysine decarboxy... 1602 0.0 AT2G37210.2 | Symbols: | lysine decarboxylase family protein |... 257 1e-67 > AT2G28305.1 | Symbols: LOG1, ATLOG1 | Putative lysine decarboxylase family protein | chr2:12081113-12084664 FORWARD LENGTH=1072 Length=1072 Score = 1602 bits (867), Expect = 0.0 Identities = 964/1007 (96%), Gaps = 21/1007 (2%) Strand=Plus/Plus Query 1 CACAACGAGAAAAATAGATTCATCTTTCAATCttttttt-tCCTAAAAACAAAACTTTGT 59 |||||||||||| |||||||||||||||||||||||||| | || ||||||||||||||| Sbjct 3 CACAACGAGAAAGATAGATTCATCTTTCAATCTTTTTTTAT-CTTAAAACAAAACTTTGT 61 Query 60 GTGAAGAGAGAGATGGAGATAGAACCAAAATTCAAGAGAATATGTGTGTTTTGTGGAAGT 119 ||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 62 GTGAAGAGAAAGATGGAGATAGAATCAAAGTTCAAGAGAATATGTGTGTTTTGTGGAAGT 121 Query 120 AGTGCTGGTAATAAA-TCCAGTTACAAAGATGCTGCTATCGAGCTCGGAACTGAACTGGT 178 ||||||||||||||| | |||||||||||||||||||||||| |||||||| |||||||| Sbjct 122 AGTGCTGGTAATAAAGT-CAGTTACAAAGATGCTGCTATCGAACTCGGAACCGAACTGGT 180 Query 179 ATCGAGAAATATCGATCTTGTCTATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTC 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATCGAGAAATATCGATCTTGTCTATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTC 240 Query 239 TCAAGCTGTTTTCAATGGAGGTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCAAGCTGTTTTCAATGGAGGTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCC 300 Query 299 AAGAGAGATAACAGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGACATGCACCAAAG 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AAGAGAGATAACAGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGACATGCACCAAAG 360 Query 359 GAAAGCTGAGATGGCTAAGCACTCTGATGCTTTTATCGCTTTACCTGGTGGGTATGGGAC 418 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAAAGCTGAAATGGCTAAGCACTCTGATGCTTTTATCGCTTTACCTGGTGGGTATGGGAC 420 Query 419 ACTTGAAGAGCTTCTTGAAGTTATCACTTGGGCACAGCTAGGCATCCATGATAAACCAGT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ACTTGAAGAGCTTCTTGAAGTTATCACTTGGGCACAGCTAGGCATCCATGATAAACCAGT 480 Query 479 GGGATTGTTGAATGTGGAAGGATACTACAATTCATTGTTATCATTCATAGACAAAGCAGT 538 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GGGACTGTTGAATGTGGAAGGATACTACAATTCATTGTTATCATTCATAGACAAAGCAGT 540 Query 539 GGAAGAAGGTTTCATATCACCAACTGCTCGTCATATCATTGTCTCTGCTCCTTCTGCTAA 598 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 541 GGAAGAAGGTTTCATTTCACCAACTGCTCGTCATATCATTGTATCTGCTCCTTCTGCTAA 600 Query 599 AGAACTTGTCAAGAAACTTGAGGATTATGTACCAAGGCATGAGAAGGTAGCCTCAAAGAA 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AGAACTTGTCAAGAAACTTGAGGATTATGTACCAAGGCATGAGAAGGTAGCCTCAAAGAA 660 Query 659 AAGCTGGGAGATGGAGCAAATAGGGCTAAGTCCCACTTGTGAAATTTCAAGATGAAAAAG 718 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 661 AAGCTGGGAGATGGAGCAAATAGGGCTAAGTCCCACTTGTGAAATCTCAAGATGAAAAAG 720 Query 719 GACTAATTAAATTTCTTTAATTAGGACAACCCAATTGAATGTTTCTCTCCAAAATTGGGA 778 |||||||||| |||| ||||||||||||||||||||||||| | ||||||||| |||||| Sbjct 721 GACTAATTAA-TTTCCTTAATTAGGACAACCCAATTGAATGAT-CTCTCCAAA-TTGGGA 777 Query 779 TCCTCTTTATTGATTGTAAAACGTAGTCCAAGCAAACCGG--AAAA--CAGATTGACTTT 834 ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| Sbjct 778 CCCTCTTTATTGATTGTAAAACTTAGTCCAAGCAAACCGGGGAAAAAACAGATTGACTTT 837 Query 835 CTTCTTTTTGTGTAGTTGATTCTGTTGTTTAATGTAttttttttAGATTTTTAT-CTGGG 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 838 CTTCTTTTTGTGTAGTTGATTCTGTTGTTTAATGTATTTTTTTTAGATTTTTATTC-GGG 896 Query 894 AAAAA----GAAAAGACAGAAAATATGTTGGTTTTGTTTAGTTTGTATTTTTGTAATATG 949 ||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||| Sbjct 897 AAAAAAAAAGAAAAGACAGAAAATATGTTGGTTTT-TTTAGTTTGGATTTT-GTAATATG 954 Query 950 TCCCCTAACGAACAACTCAATCTTAGGGGGtttttctttctttcttt 996 ||||| ||| ||||||||||| ||| | ||||||||||||||||| Sbjct 955 TCCCCCAACAAACAACTCAATTTTATAG--TTTTTCTTTCTTTCTTT 999 > AT2G37210.2 | Symbols: | lysine decarboxylase family protein | chr2:15623991-15626938 REVERSE LENGTH=1086 Length=1086 Score = 257 bits (139), Expect = 1e-67 Identities = 266/326 (82%), Gaps = 14/326 (4%) Strand=Plus/Plus Query 85 CAAAATTCAAG-AGAATATGTGTGTTTTGTGGAAGTAGTGC-TGGTAATAA-ATCCAGTT 141 |||| ||| || ||||| ||||| || |||||||| || | || || || | ||||| Sbjct 136 CAAAGTTC-AGAAGAATCTGTGTCTTCTGTGGAAGCAG-CCAAGGCAAGAAGA-GCAGTT 192 Query 142 ACAAAGATGCTGCTATCGAGCTCGG-AACTGAACTGGTATCGAGAAATATCGATCTTGTC 200 || ||||||||||| | || ||||| ||| |||||||| || || ||||| ||||| ||| Sbjct 193 ACCAAGATGCTGCTGTTGACCTCGGCAAC-GAACTGGTTTCAAGGAATATTGATCTAGTC 251 Query 201 TATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTCTCAAGCTGTTTTCA--ATGGAG 258 ||||| || |||||||| || || ||||||||| |||| ||||||| |||| |||| | Sbjct 252 TATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTG--TTCATGATGGTG 309 Query 259 GTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCCAAGAGAGATAACAGGAGAGA 318 |||| ||||| ||||| | || |||||||| || ||||| |||||| | || || || | Sbjct 310 GTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAA 369 Query 319 CAGTGGGAGAAGTGAAG-GCAGTAGCAGACATGCACCAAAGGAAAGCTGAGATGGCTAAG 377 |||| |||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 370 CAGTAGGAGAAGT-AAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAG 428 Query 378 CACTCTGATGCTTTTATCGCTTTACC 403 ||||||||||||||||| || ||||| Sbjct 429 CACTCTGATGCTTTTATTGCCTTACC 454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51540234822 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5