BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481690
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28200.1 | Symbols: | C2H2-type zinc finger family protein ... 1650 0.0
> AT2G28200.1 | Symbols: | C2H2-type zinc finger family protein
| chr2:12024149-12025306 FORWARD LENGTH=1158
Length=1158
Score = 1650 bits (893), Expect = 0.0
Identities = 1069/1149 (93%), Gaps = 31/1149 (3%)
Strand=Plus/Plus
Query 1 ACTGCctctcttctctctgctc-tc--tctctttctTGTTAGTTCACTCCACATAATATA 57
|||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||| |
Sbjct 1 ACTGCCTCTCTTCTCTCTTCTCTTCTGTCTCTCTCTTGTTAGTTCACTCCACATAATAAA 60
Query 58 CACCAACGATTTCATTCTTTTCTCCACAGTTTCGAAGTTTCTTCAATTGGGTTTGTTTCT 117
|||||| ||||||||||| ||||||| | |||||||||||||| ||||||||||||||||
Sbjct 61 CACCAAAGATTTCATTCTCTTCTCCATAATTTCGAAGTTTCTTGAATTGGGTTTGTTTCT 120
Query 118 TGATTGGTTTCTTGAATTGGGTTTTAGTCTTCtttttttACTATTTTTGGATATGATGAT 177
||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 121 TGATTTGTTTCTTGAATTGGGTTTTGGTCTTCTTTTCTTACTATATTTGGATATGATGAT 180
Query 178 GGGTCAAGATGAGGTTGGCAGTGATCAGACGCAAATCATAAAAGGGAAGCGTACGAAGCG 237
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 GGGTCAAGATGAGGTTGGGAGTGATCAGACGCAAATCATAAAAGGGAAACGTACGAAGCG 240
Query 238 ACAGAGATCGTCTTCGACGTTTGTGGTGACGGCGGCGACAACAGTGACCTCAACAAGTTC 297
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 ACAAAGATCGTCTTCGACGTTTGTGGTGACGGCGGCGACAACAGTGACTTCAACAAGTTC 300
Query 298 ATCAGCCGGTGGAAGCGGTGGAGGAAGAGCGGTTTCTGATGAATACAACTCGGCGGTTTC 357
||| ||||||||||| || |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 301 ATCGGCCGGTGGAAGTGGAGGAGAAAGAGCTGTTTCAGATGAATACAACTCGGCGGTTTC 360
Query 358 GTCTCCGGTGACTACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCTCCGGTGACTACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCAT 420
Query 418 GTTGGCTCGTGGAACGGTTCTTCCATCACCGGATCTCAAGAACTCGAGAAAAACTCATCA 477
||| |||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 421 GTTAGCTCGTGGGACAGTTCTTCCATCGCCGGATCTCAAGAACTCGAGAAAAATTCATCA 480
Query 478 GAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTATGAGTGTAAAACATGTAACCGGAC 537
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 481 GAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTACGAGTGTAAAACGTGTAACCGGAC 540
Query 538 GTTTTCGTCGTTCCAAGCACTTGGTGGACACAGAGCAAGCCACAAGAAGCCGAGGACGTC 597
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 GTTTTCGTCGTTCCAAGCACTTGGTGGACACAGAGCGAGCCACAAGAAGCCGAGGACGTC 600
Query 598 GACAGAGGAAAAGACTAGATTACCCCTGATGCAACCCAAGTCTAGTTTGTCAGAAGAAGG 657
||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 601 GACTGAGGAAAAGACTAGACTACCCCTGACGCAACCCAAGTCTAGTGCATCAGAAGAAGG 660
Query 658 GCAAAACAGTCATTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCAAAACAGTCATTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCAT 720
Query 718 CAACAAGGCCAATAAAGTACACGAGTGTTCCATCTGTGGTTCTGAGTTCACTTCCGGTCA 777
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 721 CAACAAGGCAAACAAAGTACACGAGTGTTCCATCTGCGGTTCTGAGTTCACTTCCGGGCA 780
Query 778 AGCGCTTGGTGGTCACATGAGGCGGCACAGGACAGCC--A-CCAC------C---G---C 822
||| || |||||||||||||||||||||||||||||| | |||| | | |
Sbjct 781 AGCTCTCGGTGGTCACATGAGGCGGCACAGGACAGCCGTAACCACGATTAGCCCCGTTGC 840
Query 823 -G-----G-A-A-GTTAGCAGAAACAGTACAGAGGAAGAGATTGAGATAAATATAGGCCG 873
| | | | || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 AGCCACCGCAGAAGTAAGCAGAAACAGTACAGAGGAAGAGATTGAGATCAATATAGGCCG 900
Query 874 TTCGATGGAACAGCAGAGGAAATATCTACCCTTGGATCTTAATCTACCAGCACCAGAAGA 933
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 TTCGATGGAACAGCAGAGGAAATATCTACCGTTGGATCTTAATCTACCAGCACCAGAAGA 960
Query 934 TGATCTAAGAGAGTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGA 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGATCTAAGAGAGTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGA 1020
Query 994 CTGTCATTACTAGTTGttttttttttACTACATAATATGATGAA-TATTTGTGAATTCTT 1052
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1021 TTGTCATTACTAGTTGTTTTTTTT--ACTACATAATATGATGAAATATTTGTGAATTCTT 1078
Query 1053 CTTACTTACTACTATATTGTTGATCATTGGAATTATTTTTTAAA-AAATTGAATCAAATA 1111
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 CTTACTTACTACTATATTGTTGATCATTGGAATTATTTTTTTTTTAAATTGAATCAAATA 1138
Query 1112 TTATCATTT 1120
|||||||||
Sbjct 1139 TTATCATTT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5