BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481697
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28120.1 | Symbols: | Major facilitator superfamily protein... 3090 0.0
> AT2G28120.1 | Symbols: | Major facilitator superfamily protein
| chr2:11985687-11987738 FORWARD LENGTH=2052
Length=2052
Score = 3090 bits (1673), Expect = 0.0
Identities = 1914/2029 (94%), Gaps = 21/2029 (1%)
Strand=Plus/Plus
Query 1 TTACATATAAACAAATTCCTCTATTCCTCTGATCTACTTTATAGCCCTGAGActctcttt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 32 TTACATATAAACAAATTCCCCTATTCCTCTGATCTACTTTATAGCCCTGAGACTCTCTTT 91
Query 61 ctgtactctaatcatttatctctctctcttagtttgttctcttattctGGATCAGCCAAG 120
||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 92 CTGTACTCTAATCATTTATCTAGCTCTCTCA-----TTCTCTTATTCTGGATCAGCCAAG 146
Query 121 TTTCTCCATTTCTCAATCAAGAAAATCTTGAAAGAGACTCAAATCTTTTCAAGATTCACT 180
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 147 TTTCTCCATTTCTCAATCAAGAAAATCTTG-AA-ATACTCAAATCTTTTCAAGATTCACT 204
Query 181 TTCAAAGATATCTTGATATTAGCCTCACACTCGGGTTTCCAAGATGGGAAACGACGAGAC 240
|||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||
Sbjct 205 TTCAAAGATATCTTGATAATAGCCTCAAACTCTGGTTTCAAAGATGGGAAACGACGAGAC 264
Query 241 CGTACGATTCTTGATTCACTTCTTTAATGGAAGATGGTTCATGGTGTTTGCTTCGTTCCT 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 265 CGTACGATTCTTGATTCACTTCTTCAATGGAAGATGGTTCATGGTGTTTGCTTCGTTTCT 324
Query 301 CATCATGGCTTGCGCTGGAGCCACTTATCTTTTCGGGACTTACTCTAAAGATATCAAATC 360
|||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||
Sbjct 325 CATCATGGCTTGCGCTGGAGCCACCTACCTTTTTGGTACTTACTCTAAAGATATCAAATC 384
Query 361 TACACTTGGTTACGACCAGACAACGTTGAACCTCTTAGGTTTCTTTAAAGATCTTGGAGC 420
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 385 TACACTTGGTTACGATCAGACCACGTTGAACCTCTTAGGTTTCTTTAAAGATCTTGGAGC 444
Query 421 TAACGTTGGAGTCTTGTCCGGACTCATAGCAGAGGTCACACCGACTTGGTTCGTCCTCAC 480
|||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 445 AAACGTTGGTGTCTTGTCCGGTCTAATAGCTGAGGTCACACCGACTTGGTTCGTCCTCAC 504
Query 481 CATTGGCTCGGCGATGAACTTCGTCGGTTACTTCATGATTTGGCTTACCGTCACAGGCAA 540
||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct 505 CATTGGCTCGGCGATGAACTTCGTCGGTTACTTTATGATCTGGCTTACCGTAACCGGCAA 564
Query 541 AGTTGCGAAGCCAAAGGTTTGGCAAATGTGTCTTTATATTTGCATAGGAGCTAACTCGCA 600
||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 565 AGTCGCTAAGCCAAAGGTTTGGCAAATGTGTCTTTATATTTGTATAGGAGCCAACTCGCA 624
Query 601 GAACTTTGCAAACACCGGAGCTTTGGTTACTTGTGTTAAGAATTTCCCTGAGAGCAGAGG 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GAACTTTGCAAACACAGGAGCTTTGGTTACTTGTGTTAAGAATTTCCCTGAGAGCAGAGG 684
Query 661 AGTTATGCTTGGTTTGCTTAAGGGTTATGTTGGACTAAGTGGCGCAATCTTGACGCAGCT 720
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 685 AGTTATGCTTGGTTTGCTTAAGGGTTATGTTGGACTAAGTGGTGCAATCTTCACGCAGCT 744
Query 721 TTATTTTGCGATCTATGGACACGATTCAAAGTCTTTGATTTTGTTGATAGCATGGTTGCC 780
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 745 TTATTTTGCGATCTATGGACACGATTCCAAGTCTTTGATCTTGTTGATAGCATGGTTGCC 804
Query 781 TGCTGCGGTTTCTCTCGTATTTGTGTATTTGATAAGAGAGAAGAAGGTTGTGAGGCAGAG 840
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TGCTGCGGTTTCTCTTGTGTTTGTGTATTTGATAAGAGAGAAGAAGGTTGTGAGGCAGAG 864
Query 841 GAATGAGCTCAGTGTGTTTTACCAATTCCTTTATATTTCTATATTCTTGGCTTTGTTCCT 900
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GAATGAGCTTAGTGTGTTTTACCAATTCCTTTATATTTCTATATTCTTGGCTTTGTTCCT 924
Query 901 TATGGCAATGAACATTGCTGAGAAGCAAGTTCATTTCTCGAAAGCCGCTTATGCGGCAAG 960
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 925 TATGGCAATGAACATTGCTGAGAAGCAAGTTCATTTCTCAAAAGCCGCTTATGCGGCTAG 984
Query 961 CGCTACGATATGTTGTGTTTTGCTTTTTGTGCCTCTTACGGTTTCGGTTAAACAAGAGAT 1020
||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 985 CGCTACGATATGTTGTGCTTTGCTTTTTGTGCCTCTTACGGTTTCCGTTAAGCAAGAGCT 1044
Query 1021 GGAAGTTTGGAACATGAAGAAGTTACCTATCGAAGAGCCGAGCGAGGTCAAGGTTGAGAA 1080
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1045 TGAAGTTTGGAACATGATGAAGTTACCTATCGAAGAGCCAAGCGAGGTCAAGGTTGAGAA 1104
Query 1081 ACCTAAGAAAGAACTTGATCTTGTTCAGGACAAAACCGCCAAGGTGGATGGAGAAGAGAA 1140
||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 1105 ACCAAAGAAAGAACTTGATCTTGATCAGGACAAAGCCGCCAAGGTGAATGGAGAAGAGAA 1164
Query 1141 GGAGACGAAATCTTGTTTCTTGACGGTGTTTTCTCCACCGCCAAGAGGGGAAGATTACAC 1200
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GGAGACAAAATCTTGTTTCTCGACGGTGTTTTCTCCACCGCCAAGAGGGGAAGATTACAC 1224
Query 1201 AATATTGCAAGCATTGCTCAGTACCGACATGATAATACTATTTGTGGCGACATTCTGTGG 1260
|||||| ||||||||| | || |||||||||||||| |||||||| ||||||||||||||
Sbjct 1225 AATATTACAAGCATTGTTAAGCACCGACATGATAATCCTATTTGTCGCGACATTCTGTGG 1284
Query 1261 TTTAGGATCGAGCTTGACTGCCGTAGACAACCTCGGGCAAATAGGAGAATCTCTCGGCTA 1320
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1285 TTTAGGATCGAGCTTGACTGCCGTAGACAACCTCGGGCAGATAGGAGAATCCCTCGGCTA 1344
Query 1321 CCCGAACCACACGGTTAGCTCCTTTGTGTCTCTAGTCAGCATATGGAATTACTTTGGTCG 1380
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1345 CCCGAACCACACGGTTAGTTCCTTTGTGTCTCTAGTCAGCATATGGAACTACTTCGGTCG 1404
Query 1381 TGTGTTCTCAGG-TGTTGTCTCAGAATACTTGCTTGCCAAGTATAAGTTACCCCGGCCGC 1439
|||||||| || | ||||||| |||||||| ||||| |||||||| |||||||||||||
Sbjct 1405 AGTGTTCTCTGGCT-TTGTCTCGGAATACTTACTTGCAAAGTATAAATTACCCCGGCCGC 1463
Query 1440 TTATGATGACATTAGTCCTCTTATTGAGTTGTGCGGGTCACCTTCTCATCGCCTTCCCGG 1499
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1464 TTATGATGACATTAGTCCTCTTATTGAGTTGTGCTGGCCACCTTCTCATCGCGTTCCCGG 1523
Query 1500 TACCAGGCTCGGTATATATAGCGTCGATTCTAATGGGATTCTCTTTTGGTGCACAACTTC 1559
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1524 TACCAGGCTCGGTATATATAGCGTCAATTCTAATGGGATTCTCTTTCGGTGCACAACTTC 1583
Query 1560 CTCTGCTCTTTGCCATCATCTCAGAACACTTTGGACTCAAGTACTACTCTACATTGTTCA 1619
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1584 CTCTGCTCTTTGCCATCATCTCAGAACTTTTTGGACTCAAGTACTACTCTACATTGTTCA 1643
Query 1620 ATTGTGGACAACTTGCTAGCCCGCTCGGGTCATACATCCTAAACGTCCGCGTCACGGGAA 1679
||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||
Sbjct 1644 ATTGTGGACAACTTGCTAGCCCGCTCGGGTCTTACATCCTGAACGTTCGTGTCACGGGAA 1703
Query 1680 TGCTTTACGATAGAGAGGCCTTGAAGCAACTAACGGCTCGAGGGCTAACTCGAAAAGACG 1739
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1704 TGCTTTACGATAAAGAGGCCTTGAAGCAACTAACGGCTCGAGGGCTAACCCGAAAAGACG 1763
Query 1740 TAAAGGACTTGACTTGCTTAGGAAGTCAATGTTATAAGCTACCGTTTGTGATTTTGGCAG 1799
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1764 TAAAGGACTTGACTTGCTTAGGAAGTCAATGTTATAAGCTGCCGTTTCTGATTTTGGCAG 1823
Query 1800 CAGTAACGTTCTTTGGAGCACTTGTGTCTTTGGGTCTAGCGATAAGGACGAGAGAGTTTT 1859
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1824 CAGTAACGTTTTTTGGAGCACTTGTATCTTTGGGGCTAGCGATAAGGACGAGAGAGTTTT 1883
Query 1860 ACAAAGGTGATATTTACAAGAAGTTTAGGGAGAGTACTGAATCCGAGTCTGA-TT----C 1914
||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |
Sbjct 1884 ACAAAGGTGATATTTACAAGAAGTTTAGGGAGAGTCCTGAGTCCGAGTCTGAATTAGTTC 1943
Query 1915 ---A---A-GAAAAGCTGTTGAATTTGTTGGTAAATAATTATCATACAAATTGTATTTGT 1967
| | ||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1944 CTGATTCAAGAAAAGCTGTTGAATTTGTTGGTAAATAATTATCACACAAATTGTTTTTGT 2003
Query 1968 AACTTGAATTATAGTTGAATAAATTAATAGAAAAGAGCCGTTTAATTTC 2016
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2004 TACTTGAATCATAGTTGAATAAATTAATAGAAAAGAGCCGTTTAATTTC 2052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99899084550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5