BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481708 Length=2019 Score E Sequences producing significant alignments: (Bits) Value AT2G28000.1 | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60al... 3267 0.0 > AT2G28000.1 | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60alpha | chr2:11926449-11929389 FORWARD LENGTH=2120 Length=2120 Score = 3267 bits (1769), Expect = 0.0 Identities = 1951/2036 (96%), Gaps = 24/2036 (1%) Strand=Plus/Plus Query 1 AAAGAATCTTCTGGATCC--TTTCT-TCAGCTA----CTCCATTTATC---TAAACCCTA 50 |||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||| Sbjct 1 AAAGAATCTTCTGGATCCTTTTTCTCTCAGCTACTCTCTCCATTTATCTAATAAACCCTA 60 Query 51 A-CCCT-CT----CACTATTCGTTTTCACTAACCACTTCCTTATCCACACCAATCGAGAA 104 | |||| || |||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 61 ACCCCTCCTCCCACACTATTCGTTTACACTAACCACTTCCTTATCCACACCAATCCAGAA 120 Query 105 CATTCCTCAAAAAGCTCGCTGCTTTTCTCTCAAAATGGCGTCCGCAAACGCTCTCTCTTC 164 | ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| Sbjct 121 CGTTCCTCAAAAAGCTCCCTCCTTTTCTCTCAAAATGGCGTCTGCAAACGCTCTCTCTTC 180 Query 165 CGCCTCCGTCCTCTGCTCTTCCCGTCAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGG 224 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGCCTCCGTCCTCTGTTCTTCCCGTCAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGG 240 Query 225 TCAGAGAGTTAGCTACAACAAGAGGACAAACAGACGTTTTAGCGTTAGAGCAAATGTAAA 284 ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| Sbjct 241 TCAGAGAGTTAGCTACAACAAGAGGACAATCAGACGTTTTAGTGTTAGAGCTAATGTAAA 300 Query 285 GGAAATAGCTTTTGACCAGCACTCTAGAGCTGCTCTTCAAGCTGGTATTGATAAGCTTGC 344 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 GGAAATAGCTTTTGACCAGCACTCTAGAGCTGCTCTACAAGCTGGTATTGATAAGCTTGC 360 Query 345 TGATTGTGTTGGTCTCACTCTTGGTCCTAGAGGGAGGAATGTTGTGTTGGATGAATTTGG 404 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 361 TGATTGTGTTGGTCTCACTCTTGGCCCTAGAGGGAGGAATGTTGTGTTGGATGAATTTGG 420 Query 405 AAGTCCTAAGGTGGTGAATGATGGTGTCACCATTGCTAGGGCTATTGAGTTACCTAATGC 464 |||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 421 AAGTCCTAAGGTTGTGAATGATGGAGTCACCATTGCTAGAGCTATTGAGTTACCTAATGC 480 Query 465 CATGGAAAATGCTGGTGCTGCGCTTATTCGTGAGGTTGCGAGTAAGACTAATGACTCGGC 524 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 481 CATGGAAAATGCTGGTGCAGCGCTTATTCGTGAGGTTGCGAGTAAGACTAATGACTCTGC 540 Query 525 TGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATCAAACATGGATTGTT 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATCAAACATGGATTGTT 600 Query 585 GAGTGTCACTTCTGGTGCAAATCCCGTTTCTCTCAAGAGGGGAATTGATAAGACCGTGCA 644 ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| || || Sbjct 601 GAGCGTCACTTCTGGTGCGAATCCCGTTTCACTCAAGAGGGGAATTGATAAGACTGTTCA 660 Query 645 AGGTCTGATTGAAGAGCTTCAGAAGAAAGCTAGGCCTGTGAAAGGTCGTGATGACATCAG 704 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 661 AGGTCTGATCGAAGAGCTTCAGAAGAAAGCTAGGCCCGTGAAAGGTCGTGATGACATCAG 720 Query 705 AGCTGTGGCTTCTATCTCTGCTGGAAATGATGACCTTATAGGGTCAATGATTGCTGATGC 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGCTGTGGCTTCTATCTCTGCTGGAAATGATGACCTTATAGGGTCAATGATTGCTGATGC 780 Query 765 CATTGACAAAGTTGGACCTGATGGTGTTTTGTCCATTGAATCTTCGTCCTCTTTTGAGAC 824 ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 781 CATCGACAAAGTTGGACCTGATGGTGTTTTGTCCATTGAATCTTCATCTTCTTTTGAGAC 840 Query 825 CACGGTCGAAGTTGAAGAAGGGATGGAGATTGACAGAGGTTACATCTCGCCTCAGTTTGT 884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CACGGTCGAAGTTGAAGAAGGGATGGAGATTGACAGAGGTTACATCTCGCCTCAGTTTGT 900 Query 885 TACAAACCCTGAGAAACTACTAGCTGAGTTTGAGAATGCTAGGGTTTTGATCACTGATCA 944 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 901 TACAAACCCTGAGAAACTACTAGCTGAGTTTGAGAATGCTAGGGTATTGATCACTGATCA 960 Query 945 GAAGATCACTGCAATCAAAGACATCATTCCTATTTTGGAGAAGACCACTCAGCTTCGTGC 1004 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 961 GAAGATCACTGCGATCAAAGACATCATCCCTATTTTGGAGAAGACCACTCAGCTTCGTGC 1020 Query 1005 TCCGTTGTTGATTATTGCAGAGGATGTTACTGGTGAAGCCTTAGCTACCCTTGTCGTGAA 1064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TCCGTTGTTGATTATTGCAGAGGATGTTACTGGTGAAGCCTTAGCTACCCTTGTCGTGAA 1080 Query 1065 CAAGCTCCGTGGTGTCCTCAATGTCGTTGCAGTTAAAGCTCCAGGATTTGGAGAAAGAAG 1124 |||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 1081 CAAGCTTCGTGGTGTCCTCAATGTTGTTGCCGTTAAAGCGCCAGGATTTGGAGAAAGAAG 1140 Query 1125 AAAAGCCATGCTTCAAGATATTGCAATCTTGACAGGAGCTGAGTACCTAGCCATGGACAT 1184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 AAAAGCCATGCTTCAAGATATTGCAATCTTGACAGGAGCTGAGTACCTAGCCATGGACAT 1200 Query 1185 GAGCTTGCTGGTTGAAAACGCAACCATAGATCAATTGGGTATTGCCCGAAAAGTCACGAT 1244 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 GAGCTTACTGGTTGAAAACGCAACCATAGATCAATTGGGTATTGCCCGAAAAGTCACGAT 1260 Query 1245 TAGCAAAGATTCGACTACCCTTATTGCAGATGCAGCTTCCAAGGACGAATTACAAGCTCG 1304 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1261 TAGCAAAGATTCGACTACCCTCATTGCAGATGCAGCTTCCAAGGACGAATTACAAGCTCG 1320 Query 1305 GATTGCTCAGCTAAAGAAAGAACTATTCGAGACTGATTCTGTGTATGACTCTGAGAAGCT 1364 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1321 GATTGCTCAGCTGAAGAAAGAACTATTCGAGACTGATTCTGTGTATGACTCAGAGAAGCT 1380 Query 1365 TGCTGAGAGAATCGCTAAGCTATCTGGAGGTGTTGCTGTCATTAAAGTCGGAGCAGCAAC 1424 ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 CGCTGAGAGAATTGCGAAGCTATCTGGAGGTGTTGCTGTCATTAAAGTCGGAGCAGCAAC 1440 Query 1425 TGAAACGGAGCTTGAGGACCGTAAGCTCCGTATCGAGGATGCAAAGAATGCAACATTTGC 1484 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1441 TGAAACTGAGCTTGAGGACCGTAAGCTTCGTATCGAGGATGCAAAGAACGCAACATTTGC 1500 Query 1485 TGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGGTGCATCTCTCCACTGT 1544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 TGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGGTGCATCTCTCCACTGT 1560 Query 1545 TATTCCCGCCATCAAGGAGACGTTCGAGGATGCTGATGAACGTTTGGGAGCTGATATAGT 1604 |||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 1561 TATTCCCGCCATTAAGGAGACTTTTGAGGATGCTGATGAACGTTTGGGAGCTGACATAGT 1620 Query 1605 ACAAAAGGCATTGCTGTCACCAGCTGCACTTATTGCCCAGAACGCTGGAGTTGAAGGAGA 1664 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1621 ACAAAAGGCATTGCTGTCACCAGCTGCTCTTATTGCTCAGAACGCTGGAGTTGAAGGAGA 1680 Query 1665 AGTTGTTGTGGAAAAGATTATGTTCAGCGAATGGGAGCAA-GGGTACAACGCGATGACTG 1723 |||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||| Sbjct 1681 AGTTGTTGTGGAAAAGATTATGTTCAGCGATTGGGAG-AATGGGTACAACGCAATGACTG 1739 Query 1724 ATACGTATGAGAATCTGTTTGAAGCTGGAGTGATTGATCCCGCAAAAGTGACGAGATGTG 1783 |||| |||||||||||||| |||||||||||||||||||| || |||||||| ||||||| Sbjct 1740 ATACATATGAGAATCTGTTCGAAGCTGGAGTGATTGATCCGGCTAAAGTGACAAGATGTG 1799 Query 1784 CGCTACAGAACGCTGCTTCCGTTGCAGGAATGGTACTGACCACTCAGGCCATTGTTGTCG 1843 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1800 CGCTACAGAACGCTGCTTCCGTAGCAGGAATGGTACTGACCACTCAGGCCATTGTTGTTG 1859 Query 1844 ACAAACCGAAACCCAAGGCTCctgctgctgctgctgctCCTGAGGGTCTCATGGTGTAAT 1903 ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 1860 ACAAACCGAAACCCAAGGCTCCTGCTGCTGCTGCT-C-C-TGAGGGTCTCATGGTGTAAT 1916 Query 1904 CAAAACACAACATCTTATCATCACAATGGCATAttttgtctttttgcacatttgttatcc 1963 |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| Sbjct 1917 CAAAACACAACATCTTATCATCACAATGGCATCTTT-GTCTTTTTGCACATTTGTCATCC 1975 Query 1964 cccattttatctgcaatgtttttcttttttgGGGGAATATGAGTAGTTTGTTAACA 2019 || |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1976 CC-ATTT-ATCTGCAATGTTTTTCTTTTTTGGGGGAATATGAGTAGTTTGTTAACA 2029 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100049686185 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5