BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481721 Length=1415 Score E Sequences producing significant alignments: (Bits) Value AT2G27820.1 | Symbols: PD1, ADT3 | prephenate dehydratase 1 | c... 1786 0.0 > AT2G27820.1 | Symbols: PD1, ADT3 | prephenate dehydratase 1 | chr2:11856768-11858288 FORWARD LENGTH=1521 Length=1521 Score = 1786 bits (967), Expect = 0.0 Identities = 1161/1249 (93%), Gaps = 35/1249 (3%) Strand=Plus/Plus Query 196 GTCAACAACAACGGCGCCGGAATCTCAGATTTGAATCTAGTTCCATTCAATAACAACAGC 255 ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| | Sbjct 276 GTC-ACAACAACGGCGCCGGAGTCTCAGATTTGAATCTAGTTCCATTCAACAACAAC--C 332 Query 256 AAATCGATTCAATCGAAGAAGCCTCTT-AGTATTTCAGATCTATCTCCAGCTCCGATGCA 314 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 333 -AATCGATTCAATCGAAGAAGCCT-TTAAGTATTTCAGATCTATCTCCAGCTCCGATGCA 390 Query 315 TGGATCTAACCTCCGCGTCGCCTATCAAGGTGTTCCCGGAGCTTACTCCGAAGCCGCCGC 374 ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 391 TGGATCTAACCTCCGTGTAGCTTATCAAGGTGTTCCCGGAGCTTACTCCGAAGCCGCCGC 450 Query 375 TGGTAAAGCTTATCCTAACTGTCAAGCGATTCCTTGCGATCAATTCGAAGTTGCGTTTCA 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 451 TGGTAAAGCTTATCCTAACTGTCAAGCGATTCCTTGCGATCAATTCGAAGTTGCGTTTCA 510 Query 435 AGCGGTTGAGCTTTGGATCGCCGATCGCGCTGTTTTACCTGTCGAAAACTCACTCGGCGG 494 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 511 AGCGGTTGAGCTTTGGATCGCCGATCGCGCTGTTTTACCCGTCGAAAACTCACTCGGCGG 570 Query 495 TTCGATTCATCGGAATTACGATCTTCTTCTCCGTCACCGTCTTCATATCGTCGGTGAAGT 554 |||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 571 TTCGATTCATCGTAATTACGATCTTCTCCTCCGTCACCGTCTTCACATCGTCGGCGAAGT 630 Query 555 TCAACTTCCGGTACATCATTGTCTCATGGCTCTTCCCGGTGTACGGAAAGAGTTTCTCAC 614 ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 631 TCAGCTTCCGGTTCATCATTGTCTCATTGCTCTTCCCGGTGTACGGAAAGAGTTTCTCAC 690 Query 615 TCGCGTTATCTCTCATCCTCAAGGACTAGCTCAATGCGAACACACGTTGACTAAACTCGG 674 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 TCGTGTGATCTCTCATCCTCAAGGACTAGCTCAATGCGAACACACGTTGACTAAACTCGG 750 Query 675 TCTCAACGTCGCTCGTGAAGCGGTTGATGATACCGCCGGAGCAGCGGAGTTTATCGCTGC 734 ||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| Sbjct 751 TCTCAACGTAGCTCGTGAAGCTGTTGATGATACCGCCGGTGCGGCGGAGTTTATCGCTGC 810 Query 735 GAACAATATCCGTGATACCGCCGCGATTGCGAGTGCACGCGCGGCGGAGATCTACGGATT 794 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 GAATAATATCCGTGACACCGCCGCGATTGCGAGTGCACGCGCGGCGGAGATCTACGGATT 870 Query 795 GGAGATTTTGGAAGATGGGATTCAAGATGACGCGAGTAACGTCACGCGCTTTGTGATGTT 854 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 871 GGAGATTTTGGAAGATGGGATACAAGATGACGCGAGTAACGTCACGCGCTTTGTGATGTT 930 Query 855 GGCGCGTGAACCGATTATACCGAGAACTGATCGGCCGTTTAAGACGAGTATAGTGTTTGC 914 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 931 GGCGCGTGAACCGATTATACCGAGAACTGATCGGCCGTTTAAGACGAGTATAGTGTTTGC 990 Query 915 TCACGAGAAAGGCACGTGCGTTTTGTTTAAGGTTCTCTCGGCTTTTGCGTTTAGGAACAT 974 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 991 TCACGAGAAAGGCACGTGCGTTTTGTTTAAGGTTCTCTCTGCTTTTGCGTTTAGGAACAT 1050 Query 975 TAGTTTGACTAAGATTGAGTCTAGGCCCAACCATAATGTTCCCATTAGGCTAGTCGATGA 1034 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1051 TAGTTTGACTAAGATTGAGTCTAGGCCGAACCATAATGTTCCTATTAGGCTAGTCGATGA 1110 Query 1035 GGCCAATGTGGGAACGGCCAAGCATTTCGAGTACATGTTTTATATCGATTTCGAGGCTTC 1094 ||| |||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||| Sbjct 1111 GGCTAATGTGGGCACGGCTAAGCATTTTGAGTATATGTTTTATATCGACTTCGAGGCTTC 1170 Query 1095 GATGGCCGAGGCGCGTGCTCAAAATGCGCTTGCTGAGGTTCAGGAGTTTACGTCGTTTTT 1154 ||||||||| | |||||||| ||||||||| |||||||||| ||||||||||||||||| Sbjct 1171 CATGGCCGAGTCACGTGCTCAGAATGCGCTTTCTGAGGTTCAAGAGTTTACGTCGTTTTT 1230 Query 1155 ACGGGTTTTGGGGAGTTATCCCATGGATATGACTTCTTGGTCTCCATCGTCT-------- 1206 ||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1231 ACGGGTTTTGGGGAGTTATCCGATGGATATGACTTCTTGGTCACCATCGTCTTCGTCCTC 1290 Query 1207 ------A-CA---TTTTCATTGTGACAATACTAAGATCAAAACCAAAGTGAT-AATTCAA 1255 | || ||||||||||||||| |||||||||| |||||| ||| | || |||| Sbjct 1291 TTCGTCATCAACATTTTCATTGTGACAACACTAAGATCATAACCAACGTG-TGAAGTCAA 1349 Query 1256 TTGGGAAAGTAAATTGGAGAAGAAAGTTGTAAACATAATTTTGATGAAAATAAATTATTT 1315 ||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 1350 TTGTGTATGTAAATTGGAGAAGAAAGTTGTAAACATAATTTTGGTGAAAATAAATTACTT 1409 Query 1316 ATTTCTCCAA-GATCAGTCTTTTGTATTTT-CTGTTTACATTAT-A--CTTTG-AGTTTC 1369 |||||||||| ||||| ||||||||||||| ||||||||||||| | ||||| |||||| Sbjct 1410 ATTTCTCCAAAGATCAATCTTTTGTATTTTGCTGTTTACATTATTATACTTTGGAGTTTC 1469 Query 1370 GTTTGATTGTA-TTAT-TT-TGAAATTACAAGTTTTGAGCTGATTTATT 1415 ||||||| ||| || | || ||||||| ||||||||||| ||||||||| Sbjct 1470 GTTTGATCGTAGTTTTATTATGAAATTGCAAGTTTTGAGTTGATTTATT 1518 Score = 255 bits (138), Expect = 6e-67 Identities = 173/190 (91%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 1 ATGAGAACTCTCTTACCTTCCCATACTCCGGCGACGGTAACAACGGCGGCGAGAAGAAGA 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 41 ATGAGAACTCTCTTACCTTCCCATACTCCGGCAACGGTAACAACGGCGGCGAGAAGAAGA 100 Query 61 CACGTCATACATTGCGCCGGTAAGAGATCTGACTCGTTCTCAATTGGTTCCAGTATCTCC 120 ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||| Sbjct 101 CACGTCATACATTGCGCCGGTAAGAGATCTGACTCTTTCTCCATTAATTCCAGTAGCTCC 160 Query 121 GATTGGCAAAGCTCATGCGCTATTCTCTCTAGCAAAGTCGTTTCACAAGAACAATCCGAT 180 |||||||||||||| ||||| |||||||| |||||||| |||||||||||||| || Sbjct 161 GATTGGCAAAGCTCCTGCGCCATTCTCTCAAGCAAAGTTAACTCACAAGAACAATCTGAA 220 Query 181 TCCCTAATCT 190 ||| || ||| Sbjct 221 TCCTTA-TCT 229 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69728557005 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5