BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481753

Length=1754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27600.1 | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase fam...  2844    0.0   
  AT1G08270.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: MIT (Inte...   394    2e-108
  AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   122    8e-27 


> AT2G27600.1 | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family 
protein | chr2:11781038-11783992 FORWARD LENGTH=1758
Length=1758

 Score = 2844 bits (1540),  Expect = 0.0
 Identities = 1697/1769 (96%), Gaps = 26/1769 (1%)
 Strand=Plus/Plus

Query  1     ATCGCTTTGCATAAtccattccttcttctccatccccttcctctc-tctccttcctccga  59
             ||||||||||||||||||||||||||||| | |   ||| ||| | ||||||||||||||
Sbjct  1     ATCGCTTTGCATAATCCATTCCTTCTTCT-C-T---CTT-CTC-CATCTCCTTCCTCCGA  53

Query  60    tcttcttcttcaatttggaatctt-ctcATCACGATTTCAAACCTCCATCGATCCTTGAT  118
             ||||| ||| ||||| |||||||| || ||||| |||||||  |||| |  | |||||||
Sbjct  54    TCTTCGTCTCCAATTCGGAATCTTCCT-ATCACAATTTCAAGGCTCCTTTAACCCTTGAT  112

Query  119   CATCACCGATTCAATCAATTTGGAATCACAATTTCAAATCGAGAGAATTTCAATTTCTCT  178
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  113   CATCACCGATTCAATCAATTCGGAATCACAATTTCAAATCGAGAGAATTTCAATTTCTCT  172

Query  179   GGTAAAACCCTAAAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGC  238
              |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  173   TGTAAAACCCT-AAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGC  231

Query  239   AAGCGGTTCATGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACG  298
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232   AAGCGGTTCATGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACG  291

Query  299   CGCTTGAGTACTTCAAAACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTA  358
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292   CGCTTGAGTACTTCAAAACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTA  351

Query  359   TTACCCAGAAATTCACCGAGTATCTTCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATG  418
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  352   TTACCCAGAAATTCACCGAGTATCTCCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATG  411

Query  419   AAGGTGGATCGGGTCCAGGATCTAACGGTGACGCTGCGGTTGCAACGAGG-CCAAAGACT  477
             ||||||||||||||||||||||||||||||| || || || ||||||||| ||||| |||
Sbjct  412   AAGGTGGATCGGGTCCAGGATCTAACGGTGATGCAGCCGTCGCAACGAGGCCCAAA-ACT  470

Query  478   AAGCCCAAAGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAGCAATCGAAGCTT  537
             ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  471   AAGCCTAAAGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAACAATCAAAGCTT  530

Query  538   CGAGCTGGGTTAAACTCTGCTATTGTTAGGGAGAAACCTAATATCAAGTGGTCTGATGTT  597
             |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct  531   CGAGCTGGGTTAAACTCTGCGATTGTTAGAGAGAAACCTAATATCAAGTGGTCAGATGTT  590

Query  598   GCTGGGCTTGAAAGTGCTAAACAAGCTTTGCAGGAAGCTGTGATTTTGCCTGTTAAGTTT  657
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct  591   GCTGGGCTTGAAAGTGCTAAACAAGCTCTGCAGGAAGCTGTGATTTTGCCTGTCAAGTTT  650

Query  658   CCACAGTTCTTCACAGGAAAGAGACGGCCATGGAGAGCTTTTCTGTTGTATGGGCCTCCT  717
             |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  651   CCACAGTTCTTCACTGGAAAGAGACGGCCTTGGAGAGCTTTTCTGTTGTATGGGCCTCCT  710

Query  718   GGAACAGGAAAATCTTATTTGGCTAAGGCTGTTGCTACTGAAGCAGACTCTACCTTTTTC  777
             |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| 
Sbjct  711   GGAACAGGAAAATCGTATTTGGCTAAGGCTGTTGCCACTGAAGCTGACTCTACCTTTTTT  770

Query  778   AGCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCA  837
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  771   AGCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCA  830

Query  838   AACCTTTTCGAGATGGCCCGTGAAAGTGCTCCATCGATTATTTTTGTTGATGAGATAGAT  897
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  831   AACCTTTTCGAGATGGCCCGTGAAAGTGCTCCCTCGATTATTTTTGTTGATGAGATAGAT  890

Query  898   TCTTTGTGCGGTACACGTGGAGAAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACA  957
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  891   TCTTTGTGTGGTACACGTGGAGAAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACA  950

Query  958   GAGCTTCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCA  1017
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  951   GAGCTTCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCA  1010

Query  1018  GCAACCAATACACCCTATGCTCTTGATCAGGCTATCCGACGACGTTTTGACAAGCGTATC  1077
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1011  GCAACCAATACACCCTATGCTCTTGATCAGGCTATCCGGCGACGTTTTGACAAGCGTATC  1070

Query  1078  TATATTCCTCTCCCAGAGGCCAAGGCTCGTCAGCACATGTTCAAAGTCCATTTGGGAGAT  1137
             ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  1071  TATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAGTCCACTTGGGAGAT  1130

Query  1138  ACACCTCATAATTTAACTGAACCTGATTTTGAATATTTAGGCCAAAAGACAGAAGGGTTT  1197
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1131  ACACCTCATAATTTAACTGAACCTGATTTTGAATATTTAGGCCAAAAGACAGAAGGGTTT  1190

Query  1198  TCTGGTTCAGATGTGTCTGTTTGTGTAAAAGATGTTCTGTTTGAACCTGTTCGTAAAACA  1257
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1191  TCTGGTTCAGATGTGTCTGTTTGTGTAAAAGATGTTCTGTTTGAACCTGTTCGTAAAACA  1250

Query  1258  CAAGATGCAATGTTCTTTTTCAAGTCTCCTGATGGTACATGGATGCCATGTGGGCCTAGG  1317
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1251  CAAGATGCAATGTTCTTTTTCAAGTCTCCTGATGGTACATGGATGCCATGTGGGCCTAGG  1310

Query  1318  CACCCTGGTGCCATCCAGACTACAATGCAAGATCTAGCAGCAAAAGGGCTTGGCGAAAAG  1377
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct  1311  CACCCTGGTGCCATCCAGACTACAATGCAAGATCTAGCAACAAAAGGGCTTGCCGAAAAG  1370

Query  1378  ATTATTCCACCACCAATCACCAGAACCGATTTCGAAAAGGTACTTGCTAGACAAAGGCCA  1437
             |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct  1371  ATTATTCCACCACCAATCACCAGAACAGATTTCGAGAAGGTACTTGCAAGACAAAGGCCA  1430

Query  1438  ACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCACACAGGAGTTTGGAGAAGAA  1497
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1431  ACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCACACAGGAGTTTGGAGAAGAA  1490

Query  1498  GGTTGATAGATTTGACATTCC-ATCAAGCATCTTTCACAATCATATTATTATTAGTCTCT  1556
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1491  GGTTGATAGATTTGACATTCCCATCAAGCATCTTTCACAATCATATTATTATTAGTCTCT  1550

Query  1557  TCACTTTCTCCTTATGTATGTACTGAGAAGCAAAACAAAATCTCAAACCCATGTTTGATT  1616
             ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1551  TCACCATCTCCTTATGTATGTACTGAGAAGCAAAACAAAATCTCAAACCCATGTTTGATT  1610

Query  1617  CCATCCCAAAAACATTGAATTTGCTTTATTTCTCGAAATGTGTaaaaaaa---TGTTCTG  1673
              | |||||||| ||||||||||||||||||||||||| ||||||||||||   |||||||
Sbjct  1611  TCTTCCCAAAA-CATTGAATTTGCTTTATTTCTCGAATTGTGTAAAAAAAAAATGTTCTG  1669

Query  1674  AACAATGTTTTCTA---AT-----CACCAAAAGTCTCCACATGAGCAAACTCCATCACTG  1725
             ||||||||||||||   ||     ||||||||||||||||||||||||||||||||||||
Sbjct  1670  AACAATGTTTTCTATTTATTATGTCACCAAAAGTCTCCACATGAGCAAACTCCATCACTG  1729

Query  1726  CTAAAGTGATGAAACCGATTTGAATCTCT  1754
             |||||||||||||||||||||||||||||
Sbjct  1730  CTAAAGTGATGAAACCGATTTGAATCTCT  1758


> AT1G08270.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); 
BEST Arabidopsis thaliana protein match is: 
AAA-type ATPase family protein (TAIR:AT2G27600.1); Has 35333 
Blast hits to 34131 proteins in 2444 species: Archae - 798; 
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; 
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr1:2606269-2607507 REVERSE LENGTH=1034
Length=1034

 Score =  394 bits (213),  Expect = 2e-108
 Identities = 401/487 (82%), Gaps = 32/487 (7%)
 Strand=Plus/Plus

Query  190  AAAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAG-CAAGCGGTTCA  248
            |||| ||||||||| |||||||| ||||||||||||||||||||  || ||||||| | |
Sbjct  70   AAAAATATGTACAGTAATTTCAAAGAACAAGCGATCGAGTACGT-TAGACAAGCGG-TAA  127

Query  249  TGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACGCGCTTGAGTA  308
             || ||||||||||| || ||||| |||||||| ||| | ||||||||||||||||| ||
Sbjct  128  AGAGGACAATGCTGGTAACTACAACAAAGCTTTTCCTTTGTACATGAACGCGCTTGAATA  187

Query  309  CTTCAAAACTC-ATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTATTACCCAGA  367
            |||||||| || ||||||| |||||||||||||||| ||||||||| || || ||| | |
Sbjct  188  CTTCAAAA-TCTATCTCAAATATGAGAAGAACCCTAGGATCAGAGATGCCATCACCGACA  246

Query  368  AATTC-ACCGAGTATCTTCGTCGTGCTGAGGAGATCCGTGCTGT-TCTCGATGAAGGTGG  425
            | ||| | ||||||||| |||||||||||||| || ||||| || | | | ||||| |||
Sbjct  247  AGTTCTA-CGAGTATCTCCGTCGTGCTGAGGAAATTCGTGCGGTAT-TAGTTGAAGTTGG  304

Query  426  ATCGGGTCCAGGATCTAACGGTGACGCTGCGGTTGCAACGAGGCCAAAGACTAAGCCCAA  485
            ||||||   |||||| || || ||||| |||||||| |||| ||| ||||||||||||||
Sbjct  305  ATCGGGGAAAGGATCGAATGGCGACGCAGCGGTTGCTACGAAGCCTAAGACTAAGCCCAA  364

Query  486  AGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAGCAATCGAAGCTTCGAGCTGG  545
            |||  | | |      ||   |||| | | |||     || |||| ||||||||||||||
Sbjct  365  AGA-CG-G-A------GG---AGAT-G-G-AGA-----AG-AATCAAAGCTTCGAGCTGG  403

Query  546  GTTAAACTCTGCTATTGTTAGGGAGAAA-CCTAATATCAAGTGGTCTGATGTTGCTGGGC  604
            |||||||||||||||| | ||||| ||| |||||  | |||||| | | |||||||||||
Sbjct  404  GTTAAACTCTGCTATTATAAGGGA-AAAGCCTAACGTTAAGTGGACAGTTGTTGCTGGGC  462

Query  605  TTGAAAGTGCTAAACAAGCTTTGCAGGAAGCTGTGATTTTGCCTGTTAAGTTTCCACAGT  664
            |||||||||| |||||||||||  |||||||||||||||||||||| || ||||||||||
Sbjct  463  TTGAAAGTGCCAAACAAGCTTTAAAGGAAGCTGTGATTTTGCCTGTGAATTTTCCACAGT  522

Query  665  TCTTCAC  671
            |||||||
Sbjct  523  TCTTCAC  529


> AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr2:11783927-11786533 REVERSE LENGTH=2607
Length=2607

 Score =  122 bits (66),  Expect = 8e-27
 Identities = 66/66 (100%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  1689  TCACCAAAAGTCTCCACATGAGCAAACTCCATCACTGCTAAAGTGATGAAACCGATTTGA  1748
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2607  TCACCAAAAGTCTCCACATGAGCAAACTCCATCACTGCTAAAGTGATGAAACCGATTTGA  2548

Query  1749  ATCTCT  1754
             ||||||
Sbjct  2547  ATCTCT  2542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 86746541760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5