BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481753 Length=1754 Score E Sequences producing significant alignments: (Bits) Value AT2G27600.1 | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase fam... 2844 0.0 AT1G08270.2 | Symbols: | CONTAINS InterPro DOMAIN/s: MIT (Inte... 394 2e-108 AT2G27610.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 122 8e-27 > AT2G27600.1 | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781038-11783992 FORWARD LENGTH=1758 Length=1758 Score = 2844 bits (1540), Expect = 0.0 Identities = 1697/1769 (96%), Gaps = 26/1769 (1%) Strand=Plus/Plus Query 1 ATCGCTTTGCATAAtccattccttcttctccatccccttcctctc-tctccttcctccga 59 ||||||||||||||||||||||||||||| | | ||| ||| | |||||||||||||| Sbjct 1 ATCGCTTTGCATAATCCATTCCTTCTTCT-C-T---CTT-CTC-CATCTCCTTCCTCCGA 53 Query 60 tcttcttcttcaatttggaatctt-ctcATCACGATTTCAAACCTCCATCGATCCTTGAT 118 ||||| ||| ||||| |||||||| || ||||| ||||||| |||| | | ||||||| Sbjct 54 TCTTCGTCTCCAATTCGGAATCTTCCT-ATCACAATTTCAAGGCTCCTTTAACCCTTGAT 112 Query 119 CATCACCGATTCAATCAATTTGGAATCACAATTTCAAATCGAGAGAATTTCAATTTCTCT 178 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 113 CATCACCGATTCAATCAATTCGGAATCACAATTTCAAATCGAGAGAATTTCAATTTCTCT 172 Query 179 GGTAAAACCCTAAAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGC 238 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 TGTAAAACCCT-AAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGC 231 Query 239 AAGCGGTTCATGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 AAGCGGTTCATGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACG 291 Query 299 CGCTTGAGTACTTCAAAACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTA 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 CGCTTGAGTACTTCAAAACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTA 351 Query 359 TTACCCAGAAATTCACCGAGTATCTTCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATG 418 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 352 TTACCCAGAAATTCACCGAGTATCTCCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATG 411 Query 419 AAGGTGGATCGGGTCCAGGATCTAACGGTGACGCTGCGGTTGCAACGAGG-CCAAAGACT 477 ||||||||||||||||||||||||||||||| || || || ||||||||| ||||| ||| Sbjct 412 AAGGTGGATCGGGTCCAGGATCTAACGGTGATGCAGCCGTCGCAACGAGGCCCAAA-ACT 470 Query 478 AAGCCCAAAGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAGCAATCGAAGCTT 537 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 471 AAGCCTAAAGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAACAATCAAAGCTT 530 Query 538 CGAGCTGGGTTAAACTCTGCTATTGTTAGGGAGAAACCTAATATCAAGTGGTCTGATGTT 597 |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 531 CGAGCTGGGTTAAACTCTGCGATTGTTAGAGAGAAACCTAATATCAAGTGGTCAGATGTT 590 Query 598 GCTGGGCTTGAAAGTGCTAAACAAGCTTTGCAGGAAGCTGTGATTTTGCCTGTTAAGTTT 657 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 591 GCTGGGCTTGAAAGTGCTAAACAAGCTCTGCAGGAAGCTGTGATTTTGCCTGTCAAGTTT 650 Query 658 CCACAGTTCTTCACAGGAAAGAGACGGCCATGGAGAGCTTTTCTGTTGTATGGGCCTCCT 717 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 651 CCACAGTTCTTCACTGGAAAGAGACGGCCTTGGAGAGCTTTTCTGTTGTATGGGCCTCCT 710 Query 718 GGAACAGGAAAATCTTATTTGGCTAAGGCTGTTGCTACTGAAGCAGACTCTACCTTTTTC 777 |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| Sbjct 711 GGAACAGGAAAATCGTATTTGGCTAAGGCTGTTGCCACTGAAGCTGACTCTACCTTTTTT 770 Query 778 AGCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCA 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 771 AGCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCA 830 Query 838 AACCTTTTCGAGATGGCCCGTGAAAGTGCTCCATCGATTATTTTTGTTGATGAGATAGAT 897 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 831 AACCTTTTCGAGATGGCCCGTGAAAGTGCTCCCTCGATTATTTTTGTTGATGAGATAGAT 890 Query 898 TCTTTGTGCGGTACACGTGGAGAAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACA 957 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 891 TCTTTGTGTGGTACACGTGGAGAAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACA 950 Query 958 GAGCTTCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCA 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 951 GAGCTTCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCA 1010 Query 1018 GCAACCAATACACCCTATGCTCTTGATCAGGCTATCCGACGACGTTTTGACAAGCGTATC 1077 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1011 GCAACCAATACACCCTATGCTCTTGATCAGGCTATCCGGCGACGTTTTGACAAGCGTATC 1070 Query 1078 TATATTCCTCTCCCAGAGGCCAAGGCTCGTCAGCACATGTTCAAAGTCCATTTGGGAGAT 1137 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1071 TATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAGTCCACTTGGGAGAT 1130 Query 1138 ACACCTCATAATTTAACTGAACCTGATTTTGAATATTTAGGCCAAAAGACAGAAGGGTTT 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 ACACCTCATAATTTAACTGAACCTGATTTTGAATATTTAGGCCAAAAGACAGAAGGGTTT 1190 Query 1198 TCTGGTTCAGATGTGTCTGTTTGTGTAAAAGATGTTCTGTTTGAACCTGTTCGTAAAACA 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 TCTGGTTCAGATGTGTCTGTTTGTGTAAAAGATGTTCTGTTTGAACCTGTTCGTAAAACA 1250 Query 1258 CAAGATGCAATGTTCTTTTTCAAGTCTCCTGATGGTACATGGATGCCATGTGGGCCTAGG 1317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 CAAGATGCAATGTTCTTTTTCAAGTCTCCTGATGGTACATGGATGCCATGTGGGCCTAGG 1310 Query 1318 CACCCTGGTGCCATCCAGACTACAATGCAAGATCTAGCAGCAAAAGGGCTTGGCGAAAAG 1377 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1311 CACCCTGGTGCCATCCAGACTACAATGCAAGATCTAGCAACAAAAGGGCTTGCCGAAAAG 1370 Query 1378 ATTATTCCACCACCAATCACCAGAACCGATTTCGAAAAGGTACTTGCTAGACAAAGGCCA 1437 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 1371 ATTATTCCACCACCAATCACCAGAACAGATTTCGAGAAGGTACTTGCAAGACAAAGGCCA 1430 Query 1438 ACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCACACAGGAGTTTGGAGAAGAA 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1431 ACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCACACAGGAGTTTGGAGAAGAA 1490 Query 1498 GGTTGATAGATTTGACATTCC-ATCAAGCATCTTTCACAATCATATTATTATTAGTCTCT 1556 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1491 GGTTGATAGATTTGACATTCCCATCAAGCATCTTTCACAATCATATTATTATTAGTCTCT 1550 Query 1557 TCACTTTCTCCTTATGTATGTACTGAGAAGCAAAACAAAATCTCAAACCCATGTTTGATT 1616 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1551 TCACCATCTCCTTATGTATGTACTGAGAAGCAAAACAAAATCTCAAACCCATGTTTGATT 1610 Query 1617 CCATCCCAAAAACATTGAATTTGCTTTATTTCTCGAAATGTGTaaaaaaa---TGTTCTG 1673 | |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1611 TCTTCCCAAAA-CATTGAATTTGCTTTATTTCTCGAATTGTGTAAAAAAAAAATGTTCTG 1669 Query 1674 AACAATGTTTTCTA---AT-----CACCAAAAGTCTCCACATGAGCAAACTCCATCACTG 1725 |||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1670 AACAATGTTTTCTATTTATTATGTCACCAAAAGTCTCCACATGAGCAAACTCCATCACTG 1729 Query 1726 CTAAAGTGATGAAACCGATTTGAATCTCT 1754 ||||||||||||||||||||||||||||| Sbjct 1730 CTAAAGTGATGAAACCGATTTGAATCTCT 1758 > AT1G08270.2 | Symbols: | CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:2606269-2607507 REVERSE LENGTH=1034 Length=1034 Score = 394 bits (213), Expect = 2e-108 Identities = 401/487 (82%), Gaps = 32/487 (7%) Strand=Plus/Plus Query 190 AAAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAG-CAAGCGGTTCA 248 |||| ||||||||| |||||||| |||||||||||||||||||| || ||||||| | | Sbjct 70 AAAAATATGTACAGTAATTTCAAAGAACAAGCGATCGAGTACGT-TAGACAAGCGG-TAA 127 Query 249 TGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACGCGCTTGAGTA 308 || ||||||||||| || ||||| |||||||| ||| | ||||||||||||||||| || Sbjct 128 AGAGGACAATGCTGGTAACTACAACAAAGCTTTTCCTTTGTACATGAACGCGCTTGAATA 187 Query 309 CTTCAAAACTC-ATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTATTACCCAGA 367 |||||||| || ||||||| |||||||||||||||| ||||||||| || || ||| | | Sbjct 188 CTTCAAAA-TCTATCTCAAATATGAGAAGAACCCTAGGATCAGAGATGCCATCACCGACA 246 Query 368 AATTC-ACCGAGTATCTTCGTCGTGCTGAGGAGATCCGTGCTGT-TCTCGATGAAGGTGG 425 | ||| | ||||||||| |||||||||||||| || ||||| || | | | ||||| ||| Sbjct 247 AGTTCTA-CGAGTATCTCCGTCGTGCTGAGGAAATTCGTGCGGTAT-TAGTTGAAGTTGG 304 Query 426 ATCGGGTCCAGGATCTAACGGTGACGCTGCGGTTGCAACGAGGCCAAAGACTAAGCCCAA 485 |||||| |||||| || || ||||| |||||||| |||| ||| |||||||||||||| Sbjct 305 ATCGGGGAAAGGATCGAATGGCGACGCAGCGGTTGCTACGAAGCCTAAGACTAAGCCCAA 364 Query 486 AGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAGCAATCGAAGCTTCGAGCTGG 545 ||| | | | || |||| | | ||| || |||| |||||||||||||| Sbjct 365 AGA-CG-G-A------GG---AGAT-G-G-AGA-----AG-AATCAAAGCTTCGAGCTGG 403 Query 546 GTTAAACTCTGCTATTGTTAGGGAGAAA-CCTAATATCAAGTGGTCTGATGTTGCTGGGC 604 |||||||||||||||| | ||||| ||| ||||| | |||||| | | ||||||||||| Sbjct 404 GTTAAACTCTGCTATTATAAGGGA-AAAGCCTAACGTTAAGTGGACAGTTGTTGCTGGGC 462 Query 605 TTGAAAGTGCTAAACAAGCTTTGCAGGAAGCTGTGATTTTGCCTGTTAAGTTTCCACAGT 664 |||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||| Sbjct 463 TTGAAAGTGCCAAACAAGCTTTAAAGGAAGCTGTGATTTTGCCTGTGAATTTTCCACAGT 522 Query 665 TCTTCAC 671 ||||||| Sbjct 523 TCTTCAC 529 > AT2G27610.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:11783927-11786533 REVERSE LENGTH=2607 Length=2607 Score = 122 bits (66), Expect = 8e-27 Identities = 66/66 (100%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 1689 TCACCAAAAGTCTCCACATGAGCAAACTCCATCACTGCTAAAGTGATGAAACCGATTTGA 1748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2607 TCACCAAAAGTCTCCACATGAGCAAACTCCATCACTGCTAAAGTGATGAAACCGATTTGA 2548 Query 1749 ATCTCT 1754 |||||| Sbjct 2547 ATCTCT 2542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86746541760 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5