BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481765
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28550.3 | Symbols: RAP2.7 | related to AP2.7 | chr2:1222584... 1184 0.0
> AT2G28550.3 | Symbols: RAP2.7 | related to AP2.7 | chr2:12225842-12228543
REVERSE LENGTH=2013
Length=2013
Score = 1184 bits (641), Expect = 0.0
Identities = 825/907 (91%), Gaps = 39/907 (4%)
Strand=Plus/Plus
Query 95 TGATTATGTAATCGTTGTTGTTAGTTGAAGACGATCTCTGA-TACTGATT-C--CATCAT 150
|||||||||||||||||||| | || ||||||||||||| | ||||||| | ||||||
Sbjct 199 TGATTATGTAATCGTTGTTGCT-GTAGAAGACGATCTCTAACAACTGATTCCTTCATCAT 257
Query 151 CACCTTCTCT--A---G--A--TT------TTGAGATGTTGGATCTTAATCTCGACGTTG 195
||||||| || | | | || ||||||||||||||||||| ||| ||| ||
Sbjct 258 CACCTTCGCTAGATTTGTAATTTTCAGAGCTTGAGATGTTGGATCTTAACCTCAACGCTG 317
Query 196 ATTCTCCCGAGTCGACTCAGTACGGTGGTGACTCATACTTAGATCGGCAAACATCAGACG 255
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 318 ATTCTCCCGAGTCGACTCAGTACGGTGGTGACTCATACTTAGATCGGCAGACATCAGACA 377
Query 256 GCTCCGCCGGGAATCGAGTGGAAGAGTCCGGTACATCGACGTCGTCTGTTATCAATGCCG 315
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 378 ACTCCGCCGGGAATCGAGTGGAAGAGTCCGGTACATCGACGTCGTCAGTTATCAATGCCG 437
Query 316 ATGGTGACGAAGACTCTTGCTCCACTCGAGCTTTCACTCTCAGTTTCGATATACTAAAAG 375
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 438 ATGGAGACGAAGACTCTTGCTCTACTCGAGCTTTCACTCTCAGTTTCGATATTTTAAAAG 497
Query 376 TCGGAAGTAGTAGCGGCGGAGATGAAA---CCTCCG--TC-GCCGGAGTTACTAAAGAGT 429
|||||||||||||||||||||| |||| || ||| || || |||||||||||||
Sbjct 498 TCGGAAGTAGTAGCGGCGGAGACGAAAGCCCCGCCGCTTCAGCTTCCGTTACTAAAGAGT 557
Query 430 TTTTTCCGGTGAGTGGAGACTGTGGACATCTACGAGATGTTGAAGG---ATCAAGCTCAA 486
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 558 TTTTTCCGGTGAGTGGAGACTGTGGACATCTACGAGATGTTGAAGGATCATCAAGCTCTA 617
Query 487 GAAGTTGGATAGATCTTTCTTTTGACCGT-TTCGGTGACGGTGAAACGAAATTGGTAACT 545
||| |||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 618 GAAACTGGATAGATCTTTCTTTTGACCGTATT-GGTGACGGAGAAACGAAATTGGTAACT 676
Query 546 CCGGTTCCAGTTCCGACTCCGGCGCCGGTTCCGACTCAGGTGAAAAAGAGTAGGAGAGGA 605
|| | |||||||||||||| ||||||||| ||||||| ||||||||| ||||||||
Sbjct 677 CC-G-----GTTCCGACTCCGGCTCCGGTTCCGGCTCAGGTTAAAAAGAGTCGGAGAGGA 730
Query 606 CCAAGATCAAGAAGTTCACAGTATAGAGGAGTTACCTTTTATAGAAGAACTGGTCGATGG 665
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 731 CCAAGGTCTAGAAGTTCACAGTATAGAGGAGTTACTTTTTATAGAAGAACTGGTCGATGG 790
Query 666 GAATCACATATTTGGGATTGTGGGAAACAAGTTTATTTAGGTGGTTTTGACACTGCTCAT 725
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 791 GAGTCACATATTTGGGATTGTGGGAAACAAGTTTATTTAGGTGGTTTCGACACTGCTCAT 850
Query 726 GCTGCAGCTAGAGCTTATGATCGAGCTGCTATAAAATTTAGAGGTGTTGATGCTGATATC 785
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 851 GCTGCAGCTAGAGCTTATGATCGAGCTGCTATTAAATTTAGAGGTGTTGATGCTGATATC 910
Query 786 AACTTTACTCTTGGCGATTACGAGGAAGATATGAAGCAGGTACAAAACTTGAGTAAGGAA 845
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 911 AACTTTACTCTTGGTGATTATGAGGAAGATATGAAACAGGTACAAAACTTGAGTAAGGAA 970
Query 846 GAGTTTGTGCATATACTTCGTCGACAGAGCAC-GGGTTTCTCGCGGGGGAGTTCGAAGTA 904
||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 971 GAGTTTGTGCATATACTGCGTAGACAGAGCACGGGGTTT-TCGCGGGGGAGTTCGAAGTA 1029
Query 905 TCGAGGGGTTACATTACATAAATGTGGTAGATGGGAAGCTAGGATGGGGCAGTTTCTTGG 964
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TCGAGGGGTTACGTTACACAAATGTGGTAGATGGGAAGCTAGGATGGGGCAGTTTCTTGG 1089
Query 965 TAAAAAG 971
|||||||
Sbjct 1090 TAAAAAG 1096
Score = 878 bits (475), Expect = 0.0
Identities = 669/753 (89%), Gaps = 51/753 (7%)
Strand=Plus/Plus
Query 971 GGCTTATGACAAGGCTGCTATCAACACCAATGGTAGAGAAGCAGTCACCAACTTTGAGAT 1030
|||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1141 GGCTTATGACAAGGCTGCAATCAACACTAATGGTAGAGAAGCAGTCACGAACTTCGAGAT 1200
Query 1031 GAGTTCATACCAAAATGAGATTAACTCTGAGACCAATAACGAAGGTGGTCATGACAAACT 1090
|||||||||||||||||||||||||||||||| ||||||| || || | | |
Sbjct 1201 GAGTTCATACCAAAATGAGATTAACTCTGAGAGCAATAAC--------TC-TG--AGA-T 1248
Query 1091 AGATCTCAACTTGGGAATCTCTTTATCGTCCGGTAATGCGCCAAAGCAAAACGGGAGGCT 1150
|| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1249 TGACCTCAACTTGGGAATCTCTTTATCGACCGGTAATGCGCCAAAGCAAAATGGGAGGCT 1308
Query 1151 CTTTCACTTCCCTTCTAATACTTATGAAACTCAACGTGGAGTGAGCTTGAGGATAGATAA 1210
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1309 CTTTCACTTCCCTTCTAATACTTATGAAACTCAGCGTGGAGTTAGCTTGAGGATAGATAA 1368
Query 1211 TGAATACATGGGAAAGCCGGTGAATACACCTCTTCCTTACGGATCCTCGGATCATCGCGC 1270
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1369 CGAATACATGGGAAAGCCGGTGAATACACCTCTTCCTTATGGATCCTCGGATCATCGC-C 1427
Query 1271 TTT-TTGGAACGGAGCATGCCCGAGTTATAATAATCCCATCGAGGGAAGAGCAACAGATA 1329
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1428 TTTACTGGAACGGAGCATGCCCGAGTTATAATAATCCCGCCGAGGGAAGAGCAACAGAAA 1487
Query 1330 AGAGAAGTGAAGCTGAAGGGATGATGAGTAACTGGGGATGGCAGAGACCGCAGC---CA- 1385
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1488 AGAGAAGTGAAGCTGAAGGGATGATGAGTAACTGGGGATGGCAGAGACCGGGGCAAACAA 1547
Query 1386 -C-C-G-G-GACCGCAGCCACC---ACCA------------TTGTTCTCAGTTGCAGCAG 1425
| | | | ||||||||||||| |||| |||||||||||||||||||
Sbjct 1548 GCGCCGTGAGACCGCAGCCACCGGGACCACAACCACCACCATTGTTCTCAGTTGCAGCAG 1607
Query 1426 CATCATCAGGATTCTCACATTTCCGGCCACAACCTCCCAATGACAATGCGACACGTGGTT 1485
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1608 CATCATCAGGATTCTCACATTTCCGGCCACAACCTCCCAATGACAATGCAACACGTGGTT 1667
Query 1486 ACTTTTATCCACAACCTTAACTTATATGGGGACATATGAGAGTTTTTT-ACCATTtctct 1544
||||||||||||| ||||||||| || ||||||||||||||||||||| ||||| |||||
Sbjct 1668 ACTTTTATCCACACCCTTAACTTGTAAGGGGACATATGAGAGTTTTTTTACCATCTCTCT 1727
Query 1545 ctctctc-----tctAGTCCCCTTTCAAAAATGTCACTTGGGTTT-AGTTTTTT-ACATA 1597
||||||| |||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 1728 CTCTCTCAACACTCTAGTCCCCTTTCAAAAATGTCATTTGGGTTTTAGATTTTTCACATA 1787
Query 1598 CAATGATCAAATTTTTCCAAATTCAGATGAGAAAATGTGGGTATTT--ACATCAAA-TTT 1654
|||||||||| |||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct 1788 CAATGATCAA-TTTTTCCAAATTCAGATGAGAAAATGTGTTTTTTTTTACATCAAAATTT 1846
Query 1655 GGTTCGTTGAGAGAAA-CTTGATCAACTAAATG 1686
|||| ||||||| ||| ||| ||||||||||||
Sbjct 1847 GGTTTGTTGAGAAAAAACTTTATCAACTAAATG 1879
Score = 86.1 bits (46), Expect = 1e-15
Identities = 51/53 (96%), Gaps = 1/53 (2%)
Strand=Plus/Plus
Query 1 AAATGTTCCCTCACACGTCTCCTTCTATCTTCTTCTCCAATT-aaaaaaaaaa 52
||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1 AAATGTTCCCTCACACGTCTCCTTCTATCTTCTTCTCCACTTTAAAAAAAAAA 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5