BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481771
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28605.1 | Symbols: | Photosystem II reaction center PsbP f... 1127 0.0
> AT2G28605.1 | Symbols: | Photosystem II reaction center PsbP
family protein | chr2:12254888-12255837 FORWARD LENGTH=870
Length=870
Score = 1127 bits (610), Expect = 0.0
Identities = 756/822 (92%), Gaps = 28/822 (3%)
Strand=Plus/Plus
Query 59 ctcccaaattgtctctcttctcaccatcatcatcttcttcttcttGT-TTTCATCAGAAG 117
|||||||||| | |||||||| |||| || ||||| || ||| | | |||||| |||
Sbjct 52 CTCCCAAATTATGTCTCTTCT---CATCTTC-TCTTC--CTCCTT-TCTCTCATCACAAG 104
Query 118 ATCCATAAACGTATCCTCTGCTTTACCCAAAATCCATCATCCAAAACTG--AG-ATCAAT 174
||||||||| | || |||||||| ||||||||||||||||| |||| || ||||||
Sbjct 105 ATCCATAAA--T-TCTTCTGCTTTGCCCAAAATCCATCATCC---ACTGTTAGCATCAAT 158
Query 175 CTCAGCAAAAGACACTTAAATCTCTCAATTCTCACACTCTTCTTCAATGGGTTTTTCTTA 234
|||||||||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 159 CTCAGCAAAAGACATTTGAATCTCTCAATTCTCACACTCTTCTTCAATGGG---TTCTTG 215
Query 235 TTGG---ATAAAGCCAAATCCATCGAAGAACTTCAAAGATACACTGATTCCAACAATGGC 291
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 216 TTGGATAATAAAGCCAAATCCATGGAAGAACTTCAAAGATACACTGATTCCAACAATGGC 275
Query 292 TTCACTCTTCTCATACCCTCTTCTTATACCAAGGTAGAGAAAGCTGGAGCCAATGCTCTG 351
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 276 TTCACTCTTCTCATACCCTCTTCTTATACAAAGGTAGAGAAAGCAGGAGCTAATGCTCTG 335
Query 352 TTTGAAGAACCAAACAATGGAAGCAACAATATTGGTGTTGTGGTTAGTCCTGTCCGTATA 411
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 336 TTTGAAGAACTAAACAATGGAAGCAACAATATTGGTGTTGTTGTTAGTCCTGTCCGTATA 395
Query 412 AAAAGTCTTGACCAATTTGGTACTCCTCAATTTGTTGCTGATAAGCTCATCAACGCAGAG 471
|| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 396 AAGAGCCTTGACCAATTTGGTTCTCCTCAATTTGTTGCTGATAAGCTTATCAACGCAGAG 455
Query 472 AAACGAAAGGAAAGTACAAAGGAAGCAGAAGTTGTGTCAGTGGGAGAGAGACCAGGATTA 531
|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 456 AAACGAAAGGAAAGCACAAAGGAAGCAGAAGTTGTATCAGTGGGAGAGAGAGCAGGATTA 515
Query 532 GGACAACAAGTGTATGAGTTTGAATACAAAATTGATAGTACGAGAGGAGGAATTAAGAGG 591
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 516 GGACAACAAGTGTATGAGTTTGAATACAAAATTGATAGTACAAGAGGAGGAATCAAGAGG 575
Query 592 GTTTTCTCAGCTGCGTTTGTGAGTTCTAATAAGCTTTATCTATTGAACGTTGTTCATTCA 651
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 576 GTTTTCTCAGCTGCGTTTGTGAGTTCTAACAAGCTTTATCTATTGAATGTTGTTCATTCA 635
Query 652 GATAAACCAGAGAATCCGTTAGATTCAAGTACGAGAATGTTGTTGGAACAAGTTCTTCAC 711
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 636 GATAAACCAGAGAATCCATTGGATTCAAGTACGAGAATGTCGTTGGAACAAGTTCTTCAC 695
Query 712 TCTTTTGATGCTCTGCCTCTTACATGACCA--A--CCCAATAAACTGTTTTCTTGTTGAG 767
|| ||||||||||||||||||||||||||| | |||||||| |||||| |||||||||
Sbjct 696 TCCTTTGATGCTCTGCCTCTTACATGACCACCAAACCCAATAATCTGTTTCCTTGTTGAG 755
Query 768 CTTGTTTGATGGGCTTATTCTTGAGTTAATGGGCTTT-GTAGTAAATTGTTGAGCCCAAT 826
||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||
Sbjct 756 CTTGTTTGATGGGCTTATTCTTGAGTTAATGGGCTTTTGTAGTCATTTATTGAGCCCAAT 815
Query 827 AAATCTGAGATTTCTTTTGTTACAAATAATGTTGCCTAGTTA 868
|||||||||||||||||||||||||||| |||||||||||||
Sbjct 816 AAATCTGAGATTTCTTTTGTTACAAATACTGTTGCCTAGTTA 857
Score = 67.6 bits (36), Expect = 2e-10
Identities = 40/42 (95%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 GGAGAAGGAAGCAAAATGTGGTCGCAAAGCTTCTTAGcttct 42
|||||| |||||||||||||||||||||||||||||| ||||
Sbjct 9 GGAGAAAGAAGCAAAATGTGGTCGCAAAGCTTCTTAGGTTCT 50
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5