BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481806 Length=1140 Score E Sequences producing significant alignments: (Bits) Value AT2G28910.1 | Symbols: CXIP4 | CAX interacting protein 4 | chr2... 1652 0.0 > AT2G28910.1 | Symbols: CXIP4 | CAX interacting protein 4 | chr2:12415780-12417385 REVERSE LENGTH=1345 Length=1345 Score = 1652 bits (894), Expect = 0.0 Identities = 1013/1070 (95%), Gaps = 10/1070 (1%) Strand=Plus/Plus Query 48 TCTTCCTAACGATTTCTTCACACGAATCAGGTTTGTGAAAGTTTTTTGTAGGGTGTCGAG 107 |||||||||||||| |||||| ||||||||||||||||| ||||||| |||||| |||| Sbjct 72 TCTTCCTAACGATTCCTTCACTCGAATCAGGTTTGTGAAGGTTTTTTCTAGGGTTTCGAA 131 Query 108 ACGATGCCGGCGACCGCAGGAAGAGTGCGTATGCCCGCAAACAATCGGGTGCATAGTAGT 167 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 AAGATGCCGGCGACAGCAGGAAGAGTGCGTATGCCCGCAAACAATCGGGTGCATAGTAGT 191 Query 168 GCAGCGCTTCAGACTCACGGGATATGGCAGAGTGCGATTGGTTATGATCCTTATGCACCA 227 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 192 GCAGCGCTTCAGACTCATGGAATATGGCAGAGTGCGATTGGTTATGATCCTTATGCACCA 251 Query 228 ACTAGTAAAGAGGAACCGAAGACGACTCAGCAGAAAACAGAAGATCCTGAGAACTCGTAT 287 ||||||||||| || || |||||||| || |||||||| |||||||| ||||||||||| Sbjct 252 ACTAGTAAAGAAGAGCCTAAGACGACACAACAGAAAACCGAAGATCCCGAGAACTCGTAC 311 Query 288 GCGAGTTTTCAAGGTCTTTTGGCTCTTGCTAGAATTACTGGTTCTAATAACGATGAGGCT 347 ||||||||||| || ||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 312 GCGAGTTTTCAGGGACTTTTGGCTCTTGCTAGGATTACGGGTTCGAATAACGATGAGGCT 371 Query 348 CGTGGTTCTTGTAAGAAGTGTGGTCGTGTTGGGCATTTGACGTTTCAGTGTAGGAATTTC 407 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 372 CGTGGTTCTTGTAAGAAGTGTGGCCGTGTTGGGCATTTGACGTTTCAGTGTAGGAATTTC 431 Query 408 TTGAGTACTAAGGAGGATAAGGATAAAGATCCTGCTGCGATTGAGGCTGCGGTTTTGTCG 467 ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| Sbjct 432 TTGAGTACTAAGGAGGATAAGGAGAAAGATCCTGGTGCGATTGAAGCTGCGGTTTTGTCG 491 Query 468 GGGTTggagaagattaggagaggagttggtaaaggtga-gttggaggaggagagtagtga 526 ||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||| Sbjct 492 GGGTTGGAGAAGATTAGGAGAGGTGTTGGTAAAGGTGAGGTT-GAGGAGGTGAGTAGTGA 550 Query 527 agaggaagaggagagtgagagtTCTGATTCGGATGTTGATTCTGAGATGGAGAGGATTAT 586 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 551 AGAGGAAGAGGAGAGTGAGAGTTCTGATTCTGATGTTGATTCTGAGATGGAGAGGATTAT 610 Query 587 TGCTGAGAGGTTTGGgaagaagaaaggtgggggtagtagtgttaagaagacgagttcggt 646 |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 611 TGCTGAGAGGTTTGGGAAGAAGAAAGGT--GGG-AGTAGTGTTAAGAAGACGAGTTCGGT 667 Query 647 gaggaagaagaagaagaagCGTGTTTCTGATGAGTCTGATTCTGATTCGGATTCTGGAGA 706 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 668 TA-G--GAAGAAGAAGAAGCGTGTTTCTGATGAGTCTGATTCTGATTCGGATTCTGGAGA 724 Query 707 TAGGAAGAGAAGGCGGAGGTCGAAGAAGAAGCGGAGTTCGCATAAgaggaggagtacgag 766 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| Sbjct 725 TAGGAAGAGAAGGCGGAGGTCGATGAAGAAGCGGAGTTCGCATAAGAGAAGGAGTTTGAG 784 Query 767 tgagtctgaggatgaggatgagggaaggagtaagcgaagaaaggagaggagaggaagaaa 826 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 785 TGAGTCTGAGGATGAGGAAGAGGGAAGGAGTAAGAGAAGAAAGGAGAGGAGAGGAAGAAA 844 Query 827 gagagatgaagatgattctgatgagtctgaggatgaagatgaCAGACGTGTgaagagaaa 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 GAGAGATGAAGATGATTCTGATGAGTCTGAGGATGAAGATGACAGACGTGTGAAGAGAAA 904 Query 887 gagtagaaaggagaagaggagaaggagaagCCGTCGTAATCATTCTGATGATTCTGATTC 946 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 GAGTAGAAAGGAGAAGAGGAGAAGGAGAAGCCGTCGTAATCATTCTGATGATTCTGATTC 964 Query 947 AGAATCCTCTGAAGATGATAGAAGGCAGAAGCGAAGGAACAAAGTCGCAGCTTCTTCTGA 1006 ||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 965 AGAGTCTTCTGAAGATGATAGAAGACAGAAGCGGAGGAACAAAGTCGCAGCTTCTTCTGA 1024 Query 1007 CTCGGAAGCCAATGTTTCAGGGGATGATGTTTCACGCGTTGGACGTGGTTCTTCTAAACG 1066 ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1025 CTCAGAAGCAAATGTTTCAGGCGATGATGTTTCACGCGTTGGACGTGGTTCTTCTAAGCG 1084 Query 1067 GTAC-GAGAAGAAGAGCAGGAAACGTCATCACAGGAAAGAGTGAAAGTAG 1115 || | |||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1085 GT-CTGAGAAGAAGAGCAGGAAACGTCATCACAGGAAAGAGCGAGAGTAG 1133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55923407130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5