BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481828
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29090.1 | Symbols: CYP707A2 | cytochrome P450, family 707, ... 2279 0.0
> AT2G29090.1 | Symbols: CYP707A2 | cytochrome P450, family 707,
subfamily A, polypeptide 2 | chr2:12494851-12499723 REVERSE
LENGTH=1975
Length=1975
Score = 2279 bits (1234), Expect = 0.0
Identities = 1430/1524 (94%), Gaps = 15/1524 (1%)
Strand=Plus/Plus
Query 21 GAATAATGCAAATCtcatcatcatcatcatcatTAATTTCTTTCTCCTCTATTTATGTTG 80
||||||||||||||||||| ||||| || ||| |||||| ||||| ||| |||||| ||
Sbjct 335 GAATAATGCAAATCTCATCTTCATCGTCTTCA--AATTTC-TTCTCTTCTCTTTATGCTG 391
Query 81 ATGAATCGGCACTAATCACAATAACGAGTGTAGTAGTAGTGGTAATAGTAGTGTTACTAA 140
||||| |||||||||||||| |||| | | | || | || ||| ||||||||||||||
Sbjct 392 ATGAACCGGCACTAATCACATTAAC-AAT-T-GT--T-GTAGTAGTAGTAGTGTTACTAT 445
Query 141 TTCAATGGTGGCTGCACCGGAAAGAGCAAAGACGAAGGCTACCGCCTGGCTCCATGGGGT 200
|| |||||||| ||||| ||||||||||||||| | ||||||| ||||||||||||||||
Sbjct 446 TTAAATGGTGGTTGCACTGGAAAGAGCAAAGACTACGGCTACCTCCTGGCTCCATGGGGT 505
Query 201 TGCCTTACATCGGAGAGACACTCCGCCTCTACACAGAGAATCCCAATTCCTTCTTCGCCA 260
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 506 TGCCTTACATCGGAGAGACACTCCGCCTCTACACAGAAAATCCCAATTCCTTCTTCGCCA 565
Query 261 CTCGCCAAAACAAGTATGGGGAGATATTCAAAACGCACATATTAGGATGTCCATGTGTGA 320
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 566 CTCGCCAAAACAAGTACGGGGATATATTCAAGACGCACATATTAGGATGTCCATGTGTGA 625
Query 321 TGATAAGTAGTCCTGAGGCGGCCCGGATGGTGTTAGTGAGCAAAGCTCACTTGTTTAAGC 380
||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 626 TGATAAGTAGTCCAGAGGCGGCTCGAATGGTGTTAGTGAGCAAAGCTCACTTGTTCAAGC 685
Query 381 CTACTTATCCTCCTAGCAAAGAGCGTATGATTGGACCAGAGGCTCTCTTCTTCCACCAAG 440
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 686 CAACTTATCCTCCAAGCAAAGAGCGTATGATTGGACCAGAGGCTCTTTTCTTCCACCAAG 745
Query 441 GTCCGTACCATTCTACCCTCAAGCGGCTCGTTCAGTCTTCCTTCATGCCTTCTGCTCTCA 500
|||| |||||||||||||| |||||||| || |||||||| |||||||||||||||||||
Sbjct 746 GTCCATACCATTCTACCCTTAAGCGGCTGGTCCAGTCTTCTTTCATGCCTTCTGCTCTCA 805
Query 501 GACCAACCGTGTCTCACATCGAGCTCCTTGTCCTCCAAACTCTATCCTCTTGGACATCCC 560
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 806 GACCAACCGTCTCTCACATCGAGCTCCTTGTCCTCCAAACCCTTTCCTCTTGGACGTCCC 865
Query 561 AAAAGTCCATCAACACCCTCGAATACATGAAACGATATGCATTCAATGTGGCGATCATGT 620
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 866 AAAAGTCCATCAACACCCTCGAATACATGAAACGATATGCATTCGATGTGGCGATCATGT 925
Query 621 CAGCGTTCGGGGACAAAGAGGAGCCCACTGCAATTGAAGCAATTAAGCATCTCTATCAAC 680
||||||||||||||||||||||||||||| | ||||| | ||||||| |||||||||||
Sbjct 926 CAGCGTTCGGGGACAAAGAGGAGCCCACTACGATTGATGTTATTAAGCTTCTCTATCAAC 985
Query 681 GTCTCGAAAGAGGTTACAACTCCATGCCTCTCGACCTACCGGGCACACTTTTTCATAAAT 740
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 986 GTCTCGAAAGGGGTTACAACTCCATGCCTCTCGACCTACCGGGCACACTTTTTCATAAGT 1045
Query 741 CCATgaaggcaagaagagaattaagcgaggaactaaggaaagtgatagagaagagaagag 800
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1046 CCATGAAGGCAAGAATAGAATTAAGCGAGGAACTAAGGAAAGTAATAGAGAAGAGAAGAG 1105
Query 801 agaatgggagagaaggaggaggaCTATTGGGAGTACTTCTCGGAGCAAAGGATAAAAAAC 860
||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1106 AGAATGGGAGAGAAGAAGGAGGACTATTGGGAGTACTTCTGGGAGCAAAGGATCAAAAAC 1165
Query 861 GCAATGGCTTAAGCGATTCACAGATCT-CCGACAACATCATTGGTGTTATCTTCGCCGCC 919
|||| |||||||| ||||||||||| | | ||||||||||| |||||||| |||||||||
Sbjct 1166 GCAACGGCTTAAGTGATTCACAGAT-TGCTGACAACATCATCGGTGTTATATTCGCCGCC 1224
Query 920 ACTGACACCACCGCTTCTGTCTTAACTTGGCTTCTCAAGTACTTACACGACCACCCCAAT 979
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 ACCGACACCACCGCTTCTGTCTTAACTTGGCTTCTCAAGTACTTACACGACCACCCCAAT 1284
Query 980 CTACTCCAAGAAGTTTCGAGGGAGCAAGTCGGCATTCGACAAAAAATAATAAAAGAAAAC 1039
|| ||||||||||| || ||||||||| || |||||||||| ||||||| ||||||||||
Sbjct 1285 CTCCTCCAAGAAGTCTCCAGGGAGCAATTCAGCATTCGACAGAAAATAAAAAAAGAAAAC 1344
Query 1040 CGAGGAATCTCATGGGAAGATACAAGAAAAATGCCACTGACCACAAGGGTGATACAAGAG 1099
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1345 CGAAGAATCTCATGGGAAGATACAAGAAAAATGCCACTGACCACTAGGGTGATACAAGAG 1404
Query 1100 ACACTAAGAGCAGCAAGTGTATTGTCCTTTACATTTAGAGAAGCAGTACAAGACGTCGAA 1159
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1405 ACACTAAGAGCAGCAAGTGTACTGTCCTTTACATTTAGAGAAGCAGTACAAGACGTCGAA 1464
Query 1160 T-TCGATGGCTACTTGATCCCAAAGGGTTGGAAGGTTCTTCCTCTTTTCCGGCGAATCCA 1218
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TAT-GATGGCTACTTGATCCCAAAGGGTTGGAAGGTTCTTCCTCTTTTCCGGCGAATCCA 1523
Query 1219 TCACTCCTCCGAATTCTTCCCCAATCCCGAAAAGTTTGATCCTTCTAGATTCGAGGTGGC 1278
|||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||
Sbjct 1524 TCACTCCTCCGAATTCTTCCCCGATCCTGAAAAATTCGATCCTTCTAGATTCGAGGTGGC 1583
Query 1279 ACCAAAACCTTACACGTATATGCCATTTGGAAATGGAGTGCACTCATGTCCAGGAAGTGA 1338
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1584 ACCAAAACCTTACACGTACATGCCATTCGGAAATGGAGTGCACTCATGTCCAGGAAGTGA 1643
Query 1339 GCTGGCTAAACTTGAGATGCTTATCCTCCTTCACCACCTCACTACTTCCTTCAGATGGGA 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 GCTGGCTAAACTTGAGATGCTTATCCTCCTTCACCACCTCACTACTTCCTTCAGATGGGA 1703
Query 1399 AGTGATAGGAGGTGAAGAAGGTATACAGTATGGTCCTTTCCCTGTACCCAAGAAGGGTTT 1458
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 AGTGATTGGAGATGAAGAAGGTATACAGTATGGTCCTTTCCCTGTACCCAAGAAGGGTTT 1763
Query 1459 ACCAATAAGAGTAACCCCGATTTAAGCCTAAGGCATATTTGG-AttttttttttttAGTC 1517
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 1764 ACCAATAAGAGTAACCCCGATTTAAGCCTAAGGCATATTTGGGATTTTTTTTACT-AGTC 1822
Query 1518 GAATAAGTCATCTTTAATTTCTCT 1541
|||||||||||||||||||||||
Sbjct 1823 CAATAAGTCATCTTTAATTTCTCT 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76053825675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5