BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481856
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29390.1 | Symbols: SMO2-2, ATSMO2 | sterol 4-alpha-methyl-o... 1051 0.0
AT1G07420.1 | Symbols: ATSMO2, SMO2-1 | sterol 4-alpha-methyl-o... 909 0.0
> AT2G29390.1 | Symbols: SMO2-2, ATSMO2 | sterol 4-alpha-methyl-oxidase
2-2 | chr2:12610543-12612894 REVERSE LENGTH=1129
Length=1129
Score = 1051 bits (569), Expect = 0.0
Identities = 625/653 (96%), Gaps = 0/653 (0%)
Strand=Plus/Plus
Query 1 GTAACCATGGATTCTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACACATTTCAGCGAC 60
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 90 GTATCCATGGATTCTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACGCATTTCAGTGAC 149
Query 61 TTTCAACTGGCGTGCATTGGGAGTTTTATCCTTCATGAAAGCGTGTTTTTCTTGTCTGGA 120
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 150 TTTCAACTGGCGTGTATTGGGAGTTTTATACTTCATGAAAGCGTGTTTTTCTTGTCTGGA 209
Query 121 CTCCCTTACATTTTCCTAGAAAGGACCGGTTTTCTCAGCAGTTACAAAATTCAGACAAAA 180
|||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||
Sbjct 210 CTCCCTTACATTTTCCTAGAAAGGACTGGTTTTCTGAGCAACTACAAAATTCAGACCAAA 269
Query 181 AATAATACTCCTGAAGCCCAAGGAAAATGCATTGCTCGACTATTGCTTTACCATTTCTGC 240
| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 270 AGTAATACTCCTGAAGCCCAGGGAAAATGCATTGCTCGACTATTACTTTACCATTGCTGC 329
Query 241 GTAAACTTGCCCCTCATGATGGCGTCTTATCCTGTCTTCAGATTCATGGGCATGCAGAGC 300
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||
Sbjct 330 GTAAACTTGCCCCTCATGATGGCGTCGTATCCTGTATTCAGATTCATGGGCATGGAAAGC 389
Query 301 AGTTTTCCTTTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCATT 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AGTTTTCCTCTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCATT 449
Query 361 GAGGATTTTGTATTCTATTGGGGTCACAGGATCTTGCATACTAAATGGCTGTACAAGAAC 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 450 GAGGATTTTGTATTCTATTGGGGTCACAGGATCTTGCATACTAAATGGCTCTACAAGAAC 509
Query 421 GTTCACAGTGTGCATCATGAGTACGCAACACCGTTTGGTTTGACATCAGAATATGCTCAC 480
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 510 GTGCACAGTGTGCATCATGAGTACGCGACACCGTTTGGTTTGACATCAGAATATGCTCAT 569
Query 481 CCCGCTGAGATTCTGTTCCTGGGTTTTGCTACCATTGTTGGTCCGGCTCTCACAGGGCCT 540
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 570 CCCGCTGAAATTCTGTTCCTTGGTTTTGCTACCATTGTTGGTCCGGCTCTCACCGGGCCT 629
Query 541 CACCTGATCACCCTCTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCACAT 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 CACCTGATCACCCTTTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCACAT 689
Query 601 TGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCTGTACGGCGG 653
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 690 TGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCTATACGGCGG 742
Score = 209 bits (113), Expect = 3e-53
Identities = 129/137 (94%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 653 GTGCTGACTTCCATGACTATCATCATCGATTACTCTACACAAAGTCTGGGAACTACTCAT 712
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 GTGCTGACTTCCATGACTACCATCATCGATTACTCTACACAAAGTCTGGCAACTACTCAT 837
Query 713 CAACTTTTGTCTACATGGACTGGATCTTTGGTACCGACAAAGGTTACAGAAAACTGAAGG 772
|||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 838 CAACGTTTGTTTACATGGACTGGATCTTTGGCACCGATAAAGGTTACAGAAAACTTAAGG 897
Query 773 CACTAAAAGAAACCTGA 789
| |||||||||||||||
Sbjct 898 CCCTAAAAGAAACCTGA 914
> AT1G07420.1 | Symbols: ATSMO2, SMO2-1 | sterol 4-alpha-methyl-oxidase
2-1 | chr1:2277807-2280297 FORWARD LENGTH=1168
Length=1168
Score = 909 bits (492), Expect = 0.0
Identities = 689/785 (88%), Gaps = 10/785 (1%)
Strand=Plus/Plus
Query 5 CCATGGATT-CTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACACATTTCAGCGACTTT 63
|||||| || || |||| ||||| |||||| |||||||||| |||||||| |||||||||
Sbjct 102 CCATGGCTTCCT-TCGTGGAATCTGGTTGGCAGTACCTTGTGACACATTTTAGCGACTTT 160
Query 64 CAACTGGCGTGCATTGGGAGTTTTATCCTTCATGAAAGCGTGTTTTTCTTGTCTGGACTC 123
|||||||| || |||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 161 CAACTGGCATGTATTGGGAGTTTTCTCCTCCATGAAAGCGTGTTTTTCTTATCTGGACTC 220
Query 124 CCTTACATTTTCCTAGAAAGGAC-CGGTTTTCTCAGC-AGTTACAAAATTCAGACAAAAA 181
|||| |||||| || |||||| | || ||||||||| || |||||||||||||||||||
Sbjct 221 CCTTTCATTTTTCTTGAAAGG-CAAGGCTTTCTCAGCAAG-TACAAAATTCAGACAAAAA 278
Query 182 ATAATACTCCTGAAGCCCAAGGAAAATGCATTGCTCGACTATTGCTTTACCATTTCTGCG 241
|||| || |||| ||||||||||||||| ||| |||| || |||||||| ||||||| ||
Sbjct 279 ATAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTTGCTTTATCATTTCTCCG 338
Query 242 TAAACTTGCCCCTCATGATGGCGTCTTATCCTGTCTTCAGATTCATGGGCATGCAG-AGC 300
||||||||||||| ||| |||| || || ||||||||| || |||||| |||| | |||
Sbjct 339 TAAACTTGCCCCTGATGTTGGCCTCCTACCCTGTCTTCCGAGCCATGGGAATGC-GAAGC 397
Query 301 AGTTTTCCTTTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCATT 360
||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 398 AGTTTTCCTCTGCCGTCCTGGAAAGAAGTGTCTGCCCAGATATTATTCTACTTTATCATT 457
Query 361 GAGGATTTTGTATTCTATTGGGGTCA-CAGGATCTTGCATACTAAATGGCTGTACAAGAA 419
||||||||||| |||||||||||||| | ||||||||||| | |||||||||||||||||
Sbjct 458 GAGGATTTTGTCTTCTATTGGGGTCATC-GGATCTTGCATTCAAAATGGCTGTACAAGAA 516
Query 420 CGTTCACAGTGTGCATCATGAGTACGCAACACCGTTTGGTTTGACATCAGAATATGCTCA 479
||| || |||||||||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 517 CGTGCATAGTGTGCATCATGAATATGCCACACCATTTGGTTTGACATCAGAATATGCTCA 576
Query 480 CCCCGCTGAGATTCTGTTCCTGGGTTTTGCTACCATTGTTGGTCCGGCTCTCACAGGGCC 539
||||||||||||||| || ||||||||||||||||| || ||||| ||||| || || ||
Sbjct 577 CCCCGCTGAGATTCTATTTCTGGGTTTTGCTACCATAGTCGGTCCAGCTCTTACTGGCCC 636
Query 540 TCACCTGATCACCCTCTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCACA 599
|||||| || || ||||||||||||||| || | ||||| | |||||||||||||||||
Sbjct 637 TCACCTAATTACTCTCTGGTTATGGATGGTGTTGAGAGTGCTGGAGACAGTTGAGGCACA 696
Query 600 TTGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCTGTACGGCGGTGCTGA 659
|||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||
Sbjct 697 TTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCTGTATGGAGGTGCTGA 756
Query 660 CTTCCATGACTATCATCATCGATTACTCTACACAAAGTCTGGGAACTACTCATCAACTTT 719
|||||||||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||
Sbjct 757 CTTCCATGACTACCATCACCGACTGCTATACACAAAGTCCGGAAACTACTCTTCAACTTT 816
Query 720 TGTCTACATGGACTGGATCTTTGGTACCGACAAAGGTTACAGAAAACTGAAGGCACTAAA 779
||| || |||||||||||||||||||| ||||| || ||||||| ||||||| | || ||
Sbjct 817 TGTGTATATGGACTGGATCTTTGGTACTGACAAGGGGTACAGAAGACTGAAGACCCTTAA 876
Query 780 AGAAA 784
|||||
Sbjct 877 AGAAA 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5