BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481867
Length=3007
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29510.1 | Symbols: | Protein of unknown function (DUF3527)... 2889 0.0
> AT2G29510.1 | Symbols: | Protein of unknown function (DUF3527)
| chr2:12634514-12638018 FORWARD LENGTH=3008
Length=3008
Score = 2889 bits (1564), Expect = 0.0
Identities = 1950/2124 (92%), Gaps = 75/2124 (4%)
Strand=Plus/Plus
Query 902 TAGAAGAGATGGACAGTTTCATGAAACCCCTCGTGCAACTGCATTCCAACAGAATGAGAA 961
|||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 908 TAGAAGAGATGGGCAGTTTCATCAGACCCCTCGTGCAACTGCGGTCCAACAGAATGAGAA 967
Query 962 GAAAGATACTGATGTTAAGA-TGCTTCCAAAAACCAGAAGTTTCTTTAGTCCATCGAAGC 1020
|||||||||||||||||||| || ||||||| || |||| | ||||||||||||||||||
Sbjct 968 GAAAGATACTGATGTTAAGATTG-TTCCAAAGACAAGAACTCTCTTTAGTCCATCGAAGC 1026
Query 1021 CAGATAGTCCTTCTTGCACACGGATAATATCAAAGAATCTAGCTGAGGATTTTAAGAAAA 1080
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 1027 CAGATAGTCCTTCTTGCACAAGGATAATATCAAAGAATCTAGCCGAGGATTTTAAGAAGA 1086
Query 1081 AAGGAGAGAAGTTGGAAGAGAGAATCCGAAATCCTCGTGTTCATGATCTTTTTGGAAAAG 1140
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1087 AAGGAGAGAAGTTGGAAGAGAGAATCCGAAATCCTCGTGTTCATGATCTCTTTGGAAAAG 1146
Query 1141 TAAAGCCTGCTGCTGTATTTGTACCAGGGATTGTTTCTCAGAAACAGTTTATTGGTTTGT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 AAAAGCCTGCTGCTGTATTTGTACCAGGGATTGTTTCTCAGAAACAGTTTATTGGTTTGT 1206
Query 1201 CCAAGTTCTATGATTCAAAAGTGTTACTAGCTGAGCGAATGGCGGAAACAAACCGAAAGG 1260
|||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1207 CCAAGTTCTATGATTCGAAAGTGTTACTAGCTGAGCGATTGGCGGAAAGTAACCGAAAGG 1266
Query 1261 GATTCCCAGAGAGGTTATTATATGGGAAAAGTACAGTTCTGGACTCTGATGTAGGTCATT 1320
| ||| ||||||||||| ||||||||| | ||||||| |||||||||||||||| ||
Sbjct 1267 GGTTCACAGAGAGGTTAGCGCATGGGAAAACTGCAGTTCTTGACTCTGATGTAGGTCCTT 1326
Query 1321 TCCGACGCGAAGCTGAT---GGAAGTAAGCCATTCTTAAAACGTATTAGCTTCTTATCAG 1377
||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1327 TCCGACGTGAAGCTGATGGAGGAAGTAAGCCATTCTTAAAACGTATCAGCTTCTTATCAG 1386
Query 1378 AAAGATCATGTTCAGCTCCACGATCAAGAAAGGCGGAATCTAGTCCCTCCAGGAGCAGGA 1437
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1387 AAAGATCATGTTCAGCTCCACGATCAAGAAAGGCTGAATCTAGTCCCTCTAGAAGCAGGA 1446
Query 1438 CTCTAGATAGAAGGTCAACAGAAACATTACCCAAACAGTCAGATCAGAAACTAGCTAAAG 1497
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1447 CTCTAGATAGAAGGTCAACAGAAACATTACCTAAACAGTCAGATCAGAAACCAGCTAAAG 1506
Query 1498 T-TGTATCAGAAAGAGCAAGGAGCATTTCACCATTTCGCCGACTCAGCTTCAGCATTGGA 1556
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 TCT-TATCAGAAAGAGCTAGGAGCATTTCACCATTTCGCCGACTCAGCTTCAGCATTGGA 1565
Query 1557 AAGTCCAGCAAAAACTCCAGCGCCGAAGATGCTAAGAATCCTCCACACTTAAGCACAGCA 1616
|||||||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 1566 AAGTCCAGTAAAAACTCCAACACCGAAGATGCTAAGACTCCTCCACACTTAAGCACAGCA 1625
Query 1617 CTTATTTCATCACGAGCTGGTTTAGAGAATCCATCTGCCTCTTCTTTCAGTGACAGCTCT 1676
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1626 CTTATTTCATCACGAGCTGGTTTAGACAATCCATCTGCCTCTTCTTTCAGTGACAGCTCT 1685
Query 1677 TCTTTTGATAAAACCAGTGCAGCAAACAGAGGCAGGTCTAGTCCGTTGAGAAGGTTACTC 1736
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1686 TCTTTTGATAAAACCAGTGCAGCAAACAGAGGCAGGTCTAGTCCATTGAGAAGGTTACTC 1745
Query 1737 GATCCTTTAATGAAACCAAAATCAACCCACTCATGTAGATCTCCTGAGCCATCACATAA- 1795
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1746 GATCCTTTAATAAAACCAAAATCAAGCCACTCATGTAGATCTCCTGAGCCATCAC-TAAA 1804
Query 1796 GGAAGCACCTTCAAGGCAACAATAGCATATTCTTTCTGAGAGTCAACCATCTTCGTCGTC 1855
||||||||||||||| |||| ||| ||| | | ||| || | | |
Sbjct 1805 GGAAGCACCTTCAAGTCAAC-----CAT---CTT-C-G----TCA----TC--C-T--T- 1840
Query 1856 CCTTCTGTCGAGAAATGGAAGATCTTCAACTGTTCAGGCTCTATTTCGAGTGACATCTAA 1915
| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1841 --T-CTGTCGAGAAATGGAAAATCTTCAACTGTTCAGGCTCTATTTCGTGTGACATCTAA 1897
Query 1916 GAATGATCAACCACTTTTCACTTTTGCGGTTGAAAAGGAACAAAGTATTACAGCAGCCAC 1975
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1898 GAATGATCAACCACTCTTCACTTTTGCGGTTGAAAAGGAACAAAGTATTACAGCAGCTAC 1957
Query 1976 AATAAGAAAACAGACTCCCCCAGAGAAGGAAGACTCTGGACTCAAGTATACTTTTTTCAC 2035
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1958 AATAAGAAAACAGACTCTCCCAGAGAAGGAAGACTATGGACACAAGTATACTTTTTTCAC 2017
Query 2036 TGTTCAAGAAGTACAGAAGAAAAATGCAAAATGGATGAACCACAACAGGAAGGTCCAAAG 2095
|||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 2018 TGTTCAAGAAGTACAGAAGAAAAATGCAAAATGGATGAACAACAGCAGGAAAGTCCAAAG 2077
Query 2096 CCAAGAGTACACATCCAACATTGTCGCTCAGATGAGAGTCTCAGATCCTAAGCCTCTGAT 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2078 CCAAGAGTACACATCCAACATTGTCGCTCAGATGAGAGTCTCAGATCCTAAGCCTCT-AT 2136
Query 2156 T-CTCGCTGGAGAAAGACCTGTCG-ATAACCTCTTAACTAGAGAATTTGTACTCGTCGCA 2213
| ||||||||||||||| ||| || | ||||||||||||||||| |||||||| || |||
Sbjct 2137 TTCTCGCTGGAGAAAGATCTG-CGGAAAACCTCTTAACTAGAGAGTTTGTACTTGTTGCA 2195
Query 2214 TCTGAATCACAGCGGACTAACGAGCTAGCTGCCATGGTGATCAAGATACCAAAACTTACA 2273
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 TCTGAATCGCAGCGGACTAACGAGCTAGCTGCCATGGTGATCAAGATACCAAAACTTACA 2255
Query 2274 GACACAAGCTCAACCAAAGATCAGAAACAGAATGAAACCACTCTTGGAGATTACTTTGCA 2333
||||||| | || | ||| | | | |||||||||||||||||||||
Sbjct 2256 GACACAA-C--AAGC-----TCA-A--C---------C-ACTCTTGGAGATTACTTTGCA 2294
Query 2334 GACGTTAACGCAACAGTGGTACTTCCAAGTGGAATTCACAGTCTCCCGCACAAAGGAGGG 2393
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2295 GAGGTTAACGCAACAGTGGTACTTCCAAGTGGAGTTCACAGTCTCCCGCACAAAGGAGGG 2354
Query 2394 CCGTCATCGCTGATCCAACGATGGAAATCAGGTGGATCATGTGACTGTGGAGGCTGGGAC 2453
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2355 CCGTCATCACTGATCCAACGATGGAAATCAGATGGATCATGTGACTGTGGAGGCTGGGAC 2414
Query 2454 ATGGGCTGCAACCTTAGAATCCTCACAAATCAGCATAATAAACCCAGAAACCCTTCTCCT 2513
| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2415 ACGGGATGTAACCTTAGAATCCTCACAAATCAGCATAATAAACCCATAAACCCTTCTCCA 2474
Query 2514 TCCACTTCAGATGCCTTCAAGCTTTTCTTTCAGGGAGGATTACAGGATAACAACAACCAA 2573
|||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 2475 ACCACTTCAGATGCCTTCAAGCTTTTCTTTCAGGGAGGAGTACAGGAGAATAACAACCAA 2534
Query 2574 CCATACTTGAGTTTCACTACATACAGAGAAGGAGTTTACGCGGTTGAGTACAATACATCG 2633
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2535 CCATACTTGAGTTTCACTACATACAGAGAAGGTGTTTACGCGGTTGAGTACAATACATCG 2594
Query 2634 CTCTCACTCTTGCAAGCATTCTCCATTTGTATAGCTGTTAACGAGGGACGGAATCCGTTA 2693
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2595 CTCTCACTCTTGCAAGCATTCTCCATTTGTATAGCGGTTAACGAGGGACGAAATCCGTTA 2654
Query 2694 A-A--GACCGCCATGGAACCGAACAGTTCACGTGTAGAGAACAAAGCTTGTGGAGGAGAG 2750
| | |||| || ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct 2655 ATAAAGACCACCGTGGAACCCAACACTTCACGTGTAGAGAAGAAAGCTTATGGAGGAGAG 2714
Query 2751 ATGTCATCGATTCAAAACGAGAGGTTGAAGTCATTTTCAGGTCCTATTGAAGCCGAGGCT 2810
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2715 ATGTCATCGATTCAAAACGAGAATTTGAAGTCATTTTCAGGTCCTATTGAAGCTGAGGCT 2774
Query 2811 CCGGCGAGGTATCTCTCACATCACCCACCTTTGTCTCCTGTTGGGAGGGTTTAGTTTCTT 2870
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2775 CCGGCTAGGTATCTCTCACACCACCCACCTTTGTCTCCTGTTGGGAGGGTTTAGTTGCTT 2834
Query 2871 CTTCAAATAAATCT-GCCtatatatgttttttatatata-tatt-t-ttCTAATGGGGTT 2926
|||||||||| ||| | ||||||| |||||| | | | | || | |||| ||||||||
Sbjct 2835 CTTCAAATAA-TCTTGT-TATATATATTTTTT-TCTTTTCTTTTCTCTTCTGATGGGGTT 2891
Query 2927 CGTATTTTCTATGTAATTACGGTGTGGAAGTAGATTACGTTAAATAGA-AA-TTTGTGAA 2984
|||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 2892 CGTATTTTCTGTGTAATTACGGCGTGGAAGTAGATTACGTTAAATAGAGAAATTTGTGAA 2951
Query 2985 ACTTGT-GTTAATCGAATATCCAC 3007
|||||| || ||||||||||||||
Sbjct 2952 ACTTGTTGT-AATCGAATATCCAC 2974
Score = 1175 bits (636), Expect = 0.0
Identities = 791/864 (92%), Gaps = 18/864 (2%)
Strand=Plus/Plus
Query 19 CTCTCTACTTCTGTAGCTGATAGGGTCAGCTTCGTCGGCGCTATTTCTGCCGGATTTCAC 78
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CTCTCTACCTCTGTAGCTGATAGGGTCAGCTTCGTCGGCGCTATTTCTGCCGGATTTCAC 117
Query 79 GGACGATTTGAGATCTGTTCTTCCTTCTTATTATT-CCTCCTCCTGATCTGATTTCA-CA 136
||||||||||||||||||||||||||||| || || |||| ||||||||||||| || |
Sbjct 118 GGACGATTTGAGATCTGTTCTTCCTTCTTCTTTTTTCCTC-TCCTGATCTGATT-CAACT 175
Query 137 CTAATCTGCTTCACTCTCTGTGTTTACTTACTGATTCCAT-CGAGT-aaaaaaaaTGTGG 194
||||||||||||| |||||||||| || ||||||||| | | ||| ||||||||||| |
Sbjct 176 CTAATCTGCTTCAGTCTCTGTGTT-ACGAACTGATTCCGTTC-AGTGAAAAAAAATGTTG 233
Query 195 AGCATTTCAAGCTTTTGCAGTATAATGGGA-AGCTAAGGAGTCATCTGAGTGAAACGTTT 253
||| |||||||||| |||||| |||||||| | || ||||||||| ||||||||||||||
Sbjct 234 AGCGTTTCAAGCTTCTGCAGTTTAATGGGAGA-CTGAGGAGTCATTTGAGTGAAACGTTT 292
Query 254 GAAACTT-GTATAACAGATGGAGTGTCGTTTGGAGTTGAAGAAGGGTTCTTGTGATAGAC 312
| ||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 293 GGAACTTTGGA-AACAGATGGAGTGTCGTTTGGAGTTGAAGAAAGGTTCTTGTGATAGAC 351
Query 313 CACCTTTTGTGGCTGCTGAGAAGAAAGTATTGACTAAGGAAAGCTCAAAGTCATTTACAC 372
|||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 352 CACCATTTGTAGCTGCTGAGAAGAAGGTATTAACTAAGGAAAGCTCAAAGGCATTTACAC 411
Query 373 CGGATAAGTTTAGAGATGATAAACGCGGGTTGTCTTACTCCGATTTCCACCGCGAGATCA 432
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 412 CGGATAAGTTTAGAGACGATAAACGCGGGTTATCTTACTCCGATTTCCACCGCGAGATCA 471
Query 433 CGAAGAAAGTTGAAGATGTATGTCCCAAACGGTTGGAGAATCGTTTGAAGTCACGGATAG 492
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 472 CGAAAAAAGTTGAAGATGTATGTCCTAAACGCTTGGAGAATCGTTTGAAGTCAAGGATAG 531
Query 493 GTAGAACTGCGTCTGGAGAAAGAGATCTTGTGAAGTACAAGTCTTATGTTCCGAGTTATA 552
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 532 GTAGAACTGCTTCAGGAGAAAGAGATCTTGTGAAGTACAAGTCTTATGTGCCGAGTTATA 591
Query 553 TAAAGAAATGTGATAAAGTTGAAGAGAAGAGTGTTAAAGCTGGTGGCATTGTTGGTTCAC 612
||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 592 TAAAGAAATGTGATAAAGTTGAAGACAAGAGTGTTAAAGCTGGTGGTGTTATTGGTTCAC 651
Query 613 AGGAGCTAAGGAATAATAGGCAAGCGAGTGATAAACTGATGGATAAGCATACGAGGTCTT 672
||||||||||||||| | | |||| || ||||||||||||||||||||||||||||||||
Sbjct 652 AGGAGCTAAGGAATA-T-G-CAAGGGATTGATAAACTGATGGATAAGCATACGAGGTCTT 708
Query 673 CGTTGTCTAACACAAGCACATCGTCTTCACTTTGGACTGATGAATCGTCTACTGATTCTA 732
| |||||||| ||||| ||||||||||| || ||||||||||| || || |||||||| |
Sbjct 709 CCTTGTCTAATACAAGTACATCGTCTTCTCTCTGGACTGATGAGTCATCGACTGATTCCA 768
Query 733 GTAGAGGTCTTTGTGCTTCTCCATTTCGTAAAAAGATCAATCATCCTCCATTGCAGTATT 792
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 769 GTAGAGGTCTTTGTGCTTCTCCTTTTCGTAAAAAGATCAATCACCCTCCTTTGCAGTATT 828
Query 793 ATCTGATGTCATCTAAGCCTGGAGATAATTTTCAAGATTTGGAGCCGCCTCGAGATAACG 852
|||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 829 ATCTCATGTCTTCTAAGCCTGGAGATAATTTTCAAGATTTGGAGCCACCTCAAGATAACG 888
Query 853 GTGATAGTACTTCCCAAAGTCATA 876
|||||| |||| || |||||||
Sbjct 889 GTGATA---CTTCTCACAGTCATA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149497490140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5