BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481873
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29590.1 | Symbols: | Thioesterase superfamily protein | ch... 813 0.0
AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 171 1e-41
> AT2G29590.1 | Symbols: | Thioesterase superfamily protein |
chr2:12654456-12655457 REVERSE LENGTH=648
Length=648
Score = 813 bits (440), Expect = 0.0
Identities = 521/560 (93%), Gaps = 5/560 (1%)
Strand=Plus/Plus
Query 43 TGAGGCACCGCGAGTGGAAGAGTTCTTAGG-GAAAGGAAAAAGCTTCTATGAGGACTTTA 101
||||||||||||||| ||||| || ||||| | |||| ||||||||||| ||| | ||||
Sbjct 82 TGAGGCACCGCGAGTTGAAGAATTTTTAGGTG-AAGGGAAAAGCTTCTACGAGAATTTTA 140
Query 102 GCCTCAGAGGAATCCGAGTCAACCGAGTCGAACCTGATTTCATTTCTTGCTATTTCAAGG 161
| |||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||
Sbjct 141 GTCTCAGAGGAATCCGAGTCAACCGAGTCGAACCGGGTTTCATTTCCTGCTCTTTCAAGG 200
Query 162 TCCCTCTTCGTTTGACGGACAGAGATGGGAATCTAGCAAATGGTGCGATTGCAAATCTTG 221
| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 201 TTCCTCTTCGTTTGACGGACAGAGACAAGAATTTAGCAAATGGTGCGATTGCAAATCTTG 260
Query 222 TGGATGAAGTTGGTGGAGCACTTGTACATGTTGAAGGTTTACCTATGAGTGTTTCAGTGG 281
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 261 TGGATGAAGTTGGTGGAGCACTTGTACATGGCGAAGGCTTACCTATGAGTGTTTCAGTGG 320
Query 282 ACATGTCTATTGCATTCCTTTCAAAAGCTAAGCTTGGTGAGGAGTTGGAGATAACGTCGA 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ACATGTCTATTGCATTCCTTTCAAAAGCTAAGCTTGGTGAGGAGTTGGAGATAACGTCGA 380
Query 342 GATTGTTAGGAGAGAGAGGAGGTTATAAAGGAACAATCGTTGTTGTGAGAAACAAGATGA 401
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 381 GATTGTTAGGAGAGAGAGGAGGTTATAAAGGAACAATCGTTGTAGTCAGAAACAAGATGA 440
Query 402 CCGGAGAGATTATAGCGGAAGGTCGACATTCTATGTTTGGTAGACAAGCTAGTAAGCTCT 461
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CCGGGGAGATTATAGCGGAAGGTCGACATTCTATGTTTGGTAGACAAGCTAGTAAGCTCT 500
Query 462 GAGCCCAACTTTTAAGTGTT-TCATCACTGTTATGTTTGTTTTCAGTAATAGGATTATGG 520
||| ||||||||||||| || | |||||||| |||| |||||||| ||||| ||||||||
Sbjct 501 GAGTCCAACTTTTAAGTCTTGT-ATCACTGTAATGTCTGTTTTCAATAATAAGATTATGG 559
Query 521 T-AGGTAAATTTGGTTAGTTAGTTTGTTCTTTCAGGTTGTGAATCTAAAACCTTTGTACA 579
| |||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||
Sbjct 560 TTAGGTAAATTTGGTTAGGTCCTTTGTTCTTTCTGGTTGTGAATCTAAAACCTTGGTACA 619
Query 580 TAGCTTATAAAGATCAAACC 599
||||||||||||||||||||
Sbjct 620 TAGCTTATAAAGATCAAACC 639
> AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12655151-12657296 FORWARD LENGTH=2057
Length=2057
Score = 171 bits (92), Expect = 1e-41
Identities = 123/138 (89%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 43 TGAGGCACCGCGAGTGGAAGAGTTCTTAGG-GAAAGGAAAAAGCTTCTATGAGGACTTTA 101
||||||||||||||| ||||| || ||||| | |||| ||||||||||| ||| | ||||
Sbjct 226 TGAGGCACCGCGAGTTGAAGAATTTTTAGGTG-AAGGGAAAAGCTTCTACGAGAATTTTA 168
Query 102 GCCTCAGAGGAATCCGAGTCAACCGAGTCGAACCTGATTTCATTTCTTGCTATTTCAAGG 161
| |||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||
Sbjct 167 GTCTCAGAGGAATCCGAGTCAACCGAGTCGAACCGGGTTTCATTTCCTGCTCTTTCAAGG 108
Query 162 TCCCTCTTCGTTTGACGG 179
| ||||||||||||||||
Sbjct 107 TTCCTCTTCGTTTGACGG 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28834400378
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5