BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481882 Length=2150 Score E Sequences producing significant alignments: (Bits) Value AT2G29670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1851 0.0 > AT2G29670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12681958-12685087 REVERSE LENGTH=2149 Length=2149 Score = 1851 bits (1002), Expect = 0.0 Identities = 1281/1409 (91%), Gaps = 45/1409 (3%) Strand=Plus/Plus Query 636 AATTCAATCGAGCCACCATGGCATGAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCA 695 |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| Sbjct 587 AATTCAATCGAGCCGCCATGGAACGAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCA 646 Query 696 AACAGTGTTGATCTTCCTCTTTCAATTCGGATCATAAAGAAGAAACGACAATGGGAAGAA 755 |||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||| Sbjct 647 AACAGTGTTGATCTTCCTCTTTCACTTCGTATTATAAAGAAGAAACGTCAATGGGAAGAA 706 Query 756 GGAGTTAAACAAGCCGGTGAATCAGCGTGTTGCTCGATGAATAAAGCTTTTTCGTCAATG 815 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 707 GGAGTTAAACAAGCTGGTGAATCTGCGTGTTGCTCGATGAATAAAGCTTTTTCTTCAATG 766 Query 816 GTGTTTATGATTCGAGAGCTTCAGAGCTTTACTCTGCATATGAGAGAGATTCTGTTTTAC 875 ||||||||||| || |||||||||||||||||| | |||||||||||||||||||| ||| Sbjct 767 GTGTTTATGATACGGGAGCTTCAGAGCTTTACTTTACATATGAGAGAGATTCTGTTCTAC 826 Query 876 GAAGATTTGCAAGGGATTTTGCTAAGAGTTAGAGAAGAGATGCAACAATCTTTCGTTTGG 935 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 GAAGACTTGCAAGAGATTTTGCTAAGAGTTAGAGAAGAGATGCAACAATCTTTCGTTTGG 886 Query 936 TTGTTTCAACGAGTTTTCTCTGCTACTCCTACGTTGATGGTTTATGTTATGATACTCTTA 995 |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 887 TTGTTTCAACAAGTTTTCTCTGCTACTCCTACGTTGATGGTTTATGTTATGATTCTCTTA 946 Query 996 GCCAATTTCACGGTTTATTCGATTGGTAGCAACAACTCCGCTTTAG-C-C----GCTCCT 1049 ||||||||||| |||||||| || |||| ||||| ||||||||||| | | |||||| Sbjct 947 GCCAATTTCACTGTTTATTCTATCGGTAACAACAGCTCCGCTTTAGCCGCTGTTGCTCCT 1006 Query 1050 CTTCCTCCGACGATTACAGAGTTAACGAC---TAGTGAAACTGATGAAACGAACGTGAAG 1106 ||||||||||||||||| |||||||| || ||||||||| || ||||| ||||||||| Sbjct 1007 CTTCCTCCGACGATTACGGAGTTAACAACTGTTAGTGAAACAGAGGAAACAAACGTGAAG 1066 Query 1107 TTTGATTCCTCGATGGTGAAAACGTTCTTTGTATCGTCTTCTAGTGGGAGTACAACTTCA 1166 |||||||||||| |||||||||||||||||||||| ||| |||||||||||| | ||||| Sbjct 1067 TTTGATTCCTCGGTGGTGAAAACGTTCTTTGTATCATCTCCTAGTGGGAGTATAGCTTCA 1126 Query 1167 GTTGGTGGTAACAACAATGGCGGCGGTGGAAACATTC--GTCCGGTTTTAAGTGGAACAG 1224 ||||||||||||||||||||||||||||||||| || | ||||| ||||| ||||| | Sbjct 1127 GTTGGTGGTAACAACAATGGCGGCGGTGGAAAC-GTCAAG-CCGGTGTTAAGCGGAACTG 1184 Query 1225 ATGGTGATGGATTCGATGGATCAGAACAGTTTAGAACAGTAATACCCGAAGGAGTTTCTC 1284 | |||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||| Sbjct 1185 ACGGTGATGGATCCGATGGATCAGAACAGTTCAGAACAATCATACCCGAAGGAGTTTCTC 1244 Query 1285 AATTGTCATCGTCGACTTTCGGGTCAACGACTACAGAGTCAGAGCCGTCAGTATCGGGAC 1344 |||||||||| |||| || | || | ||||||||||||||||||||||| Sbjct 1245 AATTGTCATCATCGA-ATT----T---CG------G-GTCAGAGCCGTCAGTATCGGGAC 1289 Query 1345 AAGATGAACATAGACTGTGGAATTCAATGGTGGAGGAAGCAGAACGAATGCAGTATTCAA 1404 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1290 AAGATGAACATAGATTGTGGAATTCGATGGTGGAGGAAGCAGAACGAATGCAGTATTCAA 1349 Query 1405 ATATTGATGGCTCGTTGGATCAAGAGACTAGGAAGCGGTTTGTGTCTCATGTGGAAGCTC 1464 ||||||| | ||||||||||| ||||| ||||||||||| ||||||||||| || |||| Sbjct 1350 ATATTGACGATTCGTTGGATCAGGAGACGAGGAAGCGGTTCGTGTCTCATGTAGAGGCTC 1409 Query 1465 GAGTAGAAGCAGAGGAAGACACGGGTTACTTCAAAACAGAGCTTATGTACCAAACAGGAC 1524 |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| || Sbjct 1410 GAGTAGAAGCAGAGGAAGACACTGGTTACTTCAAAACAGAGCTAATGTATCAAACAGAAC 1469 Query 1525 TGTCTCAAGAGCCTAATAATCCTCT-CTTGCTCGCTAACTATGCTCAGTTCCTTTACCTC 1583 ||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| Sbjct 1470 TGTCTCAAGAGCCTAATAATCCTCTAC-TACTCGCTAACTATGCTCAGTTCCTTTACCTC 1528 Query 1584 GTCTCTAATGACCATGACAGAGCGGAAGAGTACTTCAAAAGAGCGGTAGGAGTGGAACCA 1643 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1529 GTCTCTAATGACCATGACAGAGCGGAAGAGTATTTCAAGAGAGCGGTAGGAGTGGAACCG 1588 Query 1644 AAAGACGCAGAGGCGCTTAGCAAATATGCGACGTTCTTATGGAGAGCACGGGACGATCTT 1703 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1589 AAAGATGCAGAGGCGTTTAGCAAATATGCGACGTTCTTATGGAGAGCACGGGACGATCTT 1648 Query 1704 TGGGCGGCTGAGGAGACTTTCTTGGAAGCAATCGATGCTGATCCGACCAACTCTTACTAT 1763 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 1649 TGGGCGGCTGAGGAGACTTTCTTAGAAGCAATTGATGCCGATCCGACCAACTCTTACTAC 1708 Query 1764 GCTGCTAATTACGCCAATTTCTTGTGGAATACTGGCGGTGACGACACGTGTTTCCCTCTT 1823 || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1709 GCCGCTAATTACGCCAATTTCTTGTGGAATACCGGCGGTGATGACACGTGTTTCCCTCTT 1768 Query 1824 GACGACGAGTCTCATGAAGACACCATATAGATAAGA-TGGTGCAACATCAAAGTTTCTCT 1882 || ||||||||||||||||||||||| ||||||||| || |||| ||||||||| ||||| Sbjct 1769 GATGACGAGTCTCATGAAGACACCATTTAGATAAGAATG-TGCACCATCAAAGTCTCTCT 1827 Query 1883 ATATAAAATTTTGTATACAACAAATTACAACTAATGAATATACTCATATGTGCATACTGC 1942 ||||||||| |||||||||| || | ||||||||||||||||| ||||||||||||| | Sbjct 1828 ATATAAAATATTGTATACAATAAGT-ACAACTAATGAATATACACATATGTGCATAC--C 1884 Query 1943 ATACCATATTATGTATTATGTA-ATGCATGTTTGTCACCAAGGATCGGTGGGTAAAAGAG 2001 || || |||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1885 AT----TA--ATGTATTATGTATATGCATGTTTGTCACCAAGGCTCGGTGGGTAAAAGAG 1938 Query 2002 TTA-ATTAAATCCTTATAGTTGCGATCAG 2029 ||| || || | ||||| ||||||||||| Sbjct 1939 TTATAT-AA-TACTTATGGTTGCGATCAG 1965 Score = 776 bits (420), Expect = 0.0 Identities = 551/613 (90%), Gaps = 14/613 (2%) Strand=Plus/Plus Query 1 CGCGTTCTACTAAAAT-AAAGTGAAGCGCCTTTCCTCAGGATTTTCCCGAGAAAGTTTCT 59 |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct 1 CGCGTTCTACTAAAATAAAAGTGAAGCGCC-TTCCTCAGGATTTTCCCGAGTGAGTTTCG 59 Query 60 TTTTCCTCCGAGAAAATTGCAGACGTAAATTTTCATGAATTGTGGTTCTTATAGGGAGAA 119 ||||||||||||||||| ||||| ||||||||| ||| ||| ||| |||||| Sbjct 60 CTTTCCTCCGAGAAAATTTCAGACTTAAATTTTCCGGAA-------TCTAATAAGGAGAA 112 Query 120 GCCATTGTTGAAGAAACTAGTCTCTGTGTTTTGAATCTTCAAATTCAGATTCGATCTCTA 179 ||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||| Sbjct 113 GCCATTGTTGAAGAAACTAGTCTCTCTGTTTCGAATCTTCAAATTCAGATTCAATATCTA 172 Query 180 TCAGGAAAATTTCGCATGGGGGTGAAAGTAGCTTCTTCATCTCCGTTCCTTCAATGGACG 239 |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| Sbjct 173 TCAGGAAAATTTCGCATGGGGGTGAAAGTAGCTTCTTCGTCTACTTTCCTTCAATGGACT 232 Query 240 AATCAGCGTCTCGTTCATCAATCTTCTTCACCTTCTCAAACCCTAGCTTCCGGAGCCATA 299 | ||||| | | ||||||| ||||||||||| ||||||||||||||||| ||| ||||| Sbjct 233 ACTCAGCCTATTATTCATCAGTCTTCTTCACCATCTCAAACCCTAGCTTCGGGAACCATA 292 Query 300 ACATCTCCTTCAAAACGACGTAGCACAGTACACGAAGGACGGTTTATATCATGTCGTTTC 359 ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| Sbjct 293 ACATCTCCTTCAAAACGACGTAGCACAGTACACGACGGCCGGTTTCTATCATGTCGTTTC 352 Query 360 GTGCCACAGAGACTGAACCGTTCAGCTCTTTTCGGAACTCCGTCGACGAAGCTTCACCG- 418 ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| || Sbjct 353 GTGACACAGAGACTAAACCGTTCGGCTCTTTTCGGAACTCCGTCGACGAAGCTTCATCGA 412 Query 419 CTCCAAATCCTGTGAGCTATGGGAatcatcatcatcatcatcTAGACCGATCAAAACTAA 478 | |||| || |||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 413 C-CCAAGTCATGTGAGCTATGGAAATCATCATCATCATCATCTAGACCGATCAAAACTCA 471 Query 479 GTCAATTCGAAGAGTTTATAGCGCAAACTTAGATCCATTCTCCGACGAAGAGTTTTCaaa 538 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 472 GTCGTTTCGAAGAGTTTATAGCGCAAACTTAGATCCATTCTCCGACGAAGAGTTCTCGAA 531 Query 539 aaaaaTCCAAGAGCTAACTCTCAGATTCAGTGTCCCAAACCAAGACGACGACGAGAGAAA 598 ||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||| | Sbjct 532 AAAAATCCAAGAGCTAACTCTCAGATTCAATATCCCACACCATGACGACGACGAGA-ATT 590 Query 599 CAATTCAGAGCCG 611 |||| | |||||| Sbjct 591 CAAT-C-GAGCCG 601 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106625957580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5