BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481907
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29980.1 | Symbols: FAD3 | fatty acid desaturase 3 | chr2:12... 2215 0.0
> AT2G29980.1 | Symbols: FAD3 | fatty acid desaturase 3 | chr2:12781591-12785053
REVERSE LENGTH=1464
Length=1464
Score = 2215 bits (1199), Expect = 0.0
Identities = 1339/1403 (95%), Gaps = 24/1403 (2%)
Strand=Plus/Plus
Query 26 tctctctcttctctctttctatctctctttctcCGGCGATGGTTGTTGCTATGGACCAAC 85
|||||||||||||||||||| || | || |||||||||||||||||||||||||||||||
Sbjct 70 TCTCTCTCTTCTCTCTTTCTCTCCCCCTCTCTCCGGCGATGGTTGTTGCTATGGACCAAC 129
Query 86 GCACGAATGTGAACGGAGATTCCGGCGCCGGAGACCGGAAGAAAGAAGAAAGGTTTGATC 145
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 130 GCACCAATGTGAACGGAGATCCCGGCGCCGGAGACCGGAAGAAAGAAGAAAGGTTTGATC 189
Query 146 CGAGTGCACAACCACCGTTTAAGATCGGAGATATAAGGGCGGCGATTCCTAAGCACTGTT 205
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CGAGTGCACAACCACCGTTCAAGATCGGAGATATAAGGGCGGCGATTCCTAAGCACTGTT 249
Query 206 GGGTAAAGAGTCCTTTGAGATCAATGAGTTACGTCGTCAGAGACATTATCGCCGTCGCGG 265
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GGGTTAAGAGTCCTTTGAGATCAATGAGTTACGTCGTCAGAGACATTATCGCCGTCGCGG 309
Query 266 CTTTGGCCATCGCCGCCGTGTATTTTGATAGCTGGATCCTTTGGCCTCTTTATTGGGCCG 325
||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 310 CTTTGGCCATCGCTGCCGTGTATGTTGATAGCTGGTTCCTTTGGCCTCTTTATTGGGCCG 369
Query 326 CACAAGGAACACTTTTCTGGGCCATCTTCGTTCTCGGCCACGACTGTGGACATGGGAGTT 385
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 370 CCCAAGGAACACTTTTCTGGGCCATCTTTGTTCTCGGCCACGACTGTGGACATGGGAGTT 429
Query 386 TCTCAGACATTCCTCTGCTGAATAGTGTGGTTGGTCACATTCTTCATTCTTTCATCCTCG 445
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCTCAGACATTCCTCTACTGAATAGTGTGGTTGGTCACATTCTTCATTCTTTCATCCTCG 489
Query 446 TTCCTTACCATGGTTGGAGAATAAGCCACCGGACACACCACCAGAACCATGGCCATGTTG 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TTCCTTACCATGGTTGGAGAATAAGCCACCGGACACACCACCAGAACCATGGCCATGTTG 549
Query 506 AAAACGACGAGTCATGGGTTCCGTTGCCAGAAAGGGTGTACAAGAAATTGCCCCACAGTA 565
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 550 AAAACGACGAGTCATGGGTTCCGTTACCAGAAAGGGTGTACAAGAAATTGCCCCACAGTA 609
Query 566 CTCGGATGCTAAGATACACTGTCCCTCTCCCCATGCTTGCTTATCCTCTCTATTTGTGCT 625
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 610 CTCGGATGCTCAGATACACTGTCCCTCTCCCCATGCTCGCATATCCTCTCTATTTGTGCT 669
Query 626 ACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGTTTATTTGCTCCAA 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGTTTATTTGCTCCAA 729
Query 686 GCGAGAGAAAGCTTATTGCAACTTCAACTACTTGTTGGTCCATAATGTTTGTCACTCTTA 745
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 730 GCGAGAGAAAGCTTATTGCAACTTCAACTACTTGTTGGTCCATAATGTTCGTCAGTCTTA 789
Query 746 TCGCTCTATCATTCATCTTCGGTCCACTCGCGGTTCTCAAAGTATACGGTGTACCGTACA 805
|||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 790 TCGCTCTATCTTTCGTCTTCGGTCCACTCGCGGTTCTTAAAGTCTACGGTGTACCGTACA 849
Query 806 TCATCTTTGTGATGTGGTTGGACGCTGTCACGTATTTACATCACCATGGTCACGATGAGA 865
| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 850 TTATCTTTGTGATGTGGTTGGATGCTGTCACGTATTTGCATCATCATGGTCACGATGAGA 909
Query 866 AGTTGCCTTGGTATAGAGGCAAGGAATGGAGTTATCTACGTGGAGGATTAACAACAATTG 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 AGTTGCCTTGGTATAGAGGCAAGGAATGGAGTTATCTACGTGGAGGATTAACAACAATTG 969
Query 926 ATAGAGATTACGGAATCTTCAACAACATTCATCACGACATTGGAACTCACGTGATCCATC 985
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATAGAGATTACGGAATCTTTAACAACATTCATCACGACATTGGAACTCACGTGATCCATC 1029
Query 986 ATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGATGCCACGAAAGCAGCTAAACATG 1045
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1030 ATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGACGCCACGAAAGCAGCTAAACATG 1089
Query 1046 TGTTGGGAAGATACTACAGAGAACCAAAGACGTCAGGAGCAATACCAATCCACTTGGTGG 1105
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1090 TGTTGGGAAGATACTACAGAGAACCAAAGACGTCAGGAGCAATACCGATCCACTTGGTGG 1149
Query 1106 AGAGTTTGGTCGCAAGTATTAAGAAAGATCATTACGTCAGTGACACTGGTGATATTGTCT 1165
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1150 AGAGTTTGGTCGCAAGTATTAAGAAAGATCATTACGTCAGCGACACTGGTGATATTGTCT 1209
Query 1166 TCTACGAGACAGATCCAGATCTCTACGTTTACGCTTCTGACAAATCTAAAATCAATTAAT 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TCTACGAGACAGATCCAGATCTCTACGTTTACGCTTCTGACAAATCTAAAATCAATTAAT 1269
Query 1226 CTCTTCCTTTTTCATTTGTTTAGCTCTATTAGGAATAAACTAGCCCTCtttt----tttt 1281
||| | ||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1270 CTC--C-------ATTTGTTTAGCTCTATTAGGAATAAACCAGCCCACTTTTAAAATTTT 1320
Query 1282 t-ttGTCTTGTTGTTTTTAAGTTAAAAGTGTTCTCGTGAAACTCTCTCtttttt-ttttt 1339
| || |||||||||||||||||||||||||| ||||||||||||| | |||||| |||||
Sbjct 1321 TATT-TCTTGTTGTTTTTAAGTTAAAAGTGTACTCGTGAAACTCTTTTTTTTTTCTTTTT 1379
Query 1340 -----AT-AATGTATTTACATTACAAGACGTAAAGttttgttccttt-tcttttcttttt 1392
|| ||||||||||||||||||| |||||||||||||| ||| ||||||||| ||
Sbjct 1380 TTTTTATTAATGTATTTACATTACAAGGCGTAAAGTTTTGTTA-TTTCTCTTTTCTTCTT 1438
Query 1393 ttAGTTACCATCAAAAAGATTTC 1415
|||||||||||||||||||||||
Sbjct 1439 TTAGTTACCATCAAAAAGATTTC 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5