BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481911
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30020.1 | Symbols: | Protein phosphatase 2C family protein... 2052 0.0
AT2G05050.1 | Symbols: | Protein phosphatase 2C family protein... 592 4e-168
AT4G08260.1 | Symbols: | Protein phosphatase 2C family protein... 553 2e-156
AT1G07160.1 | Symbols: | Protein phosphatase 2C family protein... 516 3e-145
AT3G27140.1 | Symbols: | Protein phosphatase 2C family protein... 483 3e-135
AT5G28176.1 | Symbols: | transposable element gene | chr5:1016... 366 3e-100
AT1G32720.1 | Symbols: | Cytochrome C oxidase polypeptide VIB ... 178 1e-43
AT1G29620.1 | Symbols: | Cytochrome C oxidase polypeptide VIB ... 135 8e-31
AT2G14270.1 | Symbols: | Cytochrome C oxidase polypeptide VIB ... 124 2e-27
> AT2G30020.1 | Symbols: | Protein phosphatase 2C family protein
| chr2:12814410-12816088 FORWARD LENGTH=1402
Length=1402
Score = 2052 bits (1111), Expect = 0.0
Identities = 1314/1411 (93%), Gaps = 17/1411 (1%)
Strand=Plus/Plus
Query 1 AAATCGAAATCGGAATCTAGAAACGATGTCTTGTTCCGTCGCCGTTTGTAATTCTCCGGT 60
||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 3 AAATCGAAATCAAAATATAGAAACGATGTCTTGCTCCGTCGCCGTATGTAATTCTCCGGT 62
Query 61 GTTTTCACCGTCGTCGTCTCTATTCTGCAACAAAGCTTCGATTCTCTCTTCACCGCAAGA 120
||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 63 GTTTTCACCGTCGTCTTCTCTATTCTGCAACAAATCTTCGATTCTCTCGTCACCGCAAGA 122
Query 121 Atctctttctctaactctttctcatcgcaaacctcaaacctcttctccttcctctccttc 180
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 123 ATCTCTTTCTCTAACGCTTTCTCATCGCAAACCTCAGACCTCTTCTCCTTCCTCTCCATC 182
Query 181 cACCACCGTTTCTTCTCCTAAATCGCCGTTTCGTCTCCGTTTCCAGAAACCTCCGTCCGG 240
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 183 CACCACCGTTTCTTCTCCTAAATCTCCATTTCGTCTCCGTTTCCAGAAACCTCCGTCCGG 242
Query 241 ATTCGCTCCTGCTCCGTTATCGTTTGGATCTGAGTCTGTTTCTGCATCGTCTCCTCCGGG 300
||||||||||| ||| ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 243 ATTCGCTCCTGGTCCATTATCTTTTGGATCTGAATCTGTTTCTGCATCCTCTCCTCCGGG 302
Query 301 AGGTGTTTTGAAGAGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATT 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGGTGTTTTAAAGAGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATT 362
Query 361 TGTAGCTCCGATTTCGTCGGCGGCGGCGGCTGTGGCTGCAACGCCgagggaggagagtag 420
||||||||||||||| || |||| | ||||||||||| |||||||| |||||| ||||
Sbjct 363 TGTAGCTCCGATTTCTTCATCGGC--C-GCTGTGGCTGCGACGCCGAGAGAGGAGTGTAG 419
Query 421 agaggttgagagagaAGGTGATGGTTACTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGC 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 AGAGGTTGAGAGAGAAGGTGATGGTTATTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGC 479
Query 481 TATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGATATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGAT-TT 538
Query 541 T-GGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCGGCTAAGAACTTAG 599
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 TCGGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCAGCTAAGAACTTAG 598
Query 600 ATAAGAACATTGTAGAAGAAATAGTTGGTTTA-AGAGACGAGTCTGAGGTAGCTGACGCG 658
|||||||||||||||||||| |||||||| | ||||||||||||||| ||||||| |||
Sbjct 599 ATAAGAACATTGTAGAAGAAGTAGTTGGTA-AGAGAGACGAGTCTGAGATAGCTGAAGCG 657
Query 659 GTGAAACGCGGTTACTTGACAACAGACGCAG-CGTTTCTTAAGGAGAAAGATGTCAAGGG 717
||||||| ||||||||| |||||||||| | |||||||||||||| |||| || |||||
Sbjct 658 GTGAAACATGGTTACTTGGCAACAGACGC-GTCGTTTCTTAAGGAGGAAGACGTTAAGGG 716
Query 718 TGGTTCGTGCTGTGTCACGGCTTTGGTTAGCGAAGGGAACCTTGTTGTGTCTAATGCCGG 777
|||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct 717 TGGTTCATGCTGTGTCACGGCTCTGGTTAACGAAGGGAACCTTGTTGTGTCTAACGCCGG 776
Query 778 TGACTGTCGCGCTGTTATGAGTGTAGGAGGTGTGGCTAAGGCTCTATCTTCTGATCACCG 837
||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 777 TGACTGTCGTGCTGTTATGAGTGTAGGAGGTGTAGCTAAGGCTTTATCTTCTGATCACCG 836
Query 838 TCCGTCTAGAGACGACGAAAGGAAAAGAATTGAAACCACGGGTGGATATGTTGATACGTT 897
|||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 837 CCCGTCTAGAGACGATGAACGGAAAAGAATTGAAACCACGGGAGGATATGTTGATACGTT 896
Query 898 TCACGGTGTTTGGAGAATCCAGGGATCTTTAGCTGTGTCGAGAGGGATCGGAGATGCTCA 957
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 897 TCACGGTGTTTGGAGAATCCAGGGATCTTTAGCTGTGTCAAGAGGAATTGGAGATGCTCA 956
Query 958 ACTTAAGAAATGGGTTATAGCTGAACCAGAGACAAAGATCTCGAGAATTGAGCAGGACCA 1017
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 957 ACTTAAGAAATGGGTTATAGCTGAACCAGAGACAAAGATTTCGAGAATCGAGCATGACCA 1016
Query 1018 TGAGTTCTTGATCTTGGCGTCAGATGGTTTATGGGATAAGGTGAGTAACCAAGAAGCAGT 1077
|||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1017 TGAGTTTTTGATCTTGGCATCTGATGGTTTATGGGATAAAGTGAGTAACCAAGAAGCAGT 1076
Query 1078 AGACATTGCTCGTCC-CTTATGCTTAGGAACCGAGAAGCCATTGTTGTTAGCAGCCTGTA 1136
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1077 AGACATTGCTCGTCCTCTC-TGCTTAGGAACCGAGAAGCCATTGTTGTTAGCTGCCTGTA 1135
Query 1137 AGAAGCTTGTCGATCTCTCGGCTTCACGAGGCTCGTCGGATGATATCAGTGTGATGTTGA 1196
|||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1136 AGAAGCTTGTCGATTTATCTGCTTCACGAGGCTCGTCTGATGATATCAGTGTGATGTTGA 1195
Query 1197 TCCCTTTGCGCCAGTTCGTATAGAAGATGAGTGGCATCTTAGAAGATTTTAGATATATGA 1256
||||||| ||||||||| ||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 1196 TCCCTTTACGCCAGTTCATATAGAAAA-GAGAGGCATCTTAGAAGATTTTAGATATATGA 1254
Query 1257 TAA-CGTTAGAACTTTGGAGGTTTTCTGTGATTTAGTTCtttt-tttAACTTTGATTCAT 1314
||| |||||||| |||||||||||| | ||||||||||||||| |||||||| ||| |||
Sbjct 1255 TAAACGTTAGAAATTTGGAGGTTTTATATGATTTAGTTCTTTTGTTTAACTT-GATCCAT 1313
Query 1315 TCATTTATTTATTCTTTCTAACTTAGTGaaaaaaaGCTAAATTTAAATGTAGCCTATGAT 1374
|||||||||||||||||||||||||||||| ||| |||||| | | ||| || ||||||
Sbjct 1314 TCATTTATTTATTCTTTCTAACTTAGTGAACAAA-GCTAAACTCAT-TGTGGCTTATGAT 1371
Query 1375 TACTTGTATGATTCGAGCATTTGTCGAAATT 1405
||||||||||||||||||||| | |||||||
Sbjct 1372 TACTTGTATGATTCGAGCATTGGCCGAAATT 1402
> AT2G05050.1 | Symbols: | Protein phosphatase 2C family protein
| chr2:1794035-1795084 FORWARD LENGTH=597
Length=597
Score = 592 bits (320), Expect = 4e-168
Identities = 390/424 (92%), Gaps = 3/424 (1%)
Strand=Plus/Plus
Query 812 GCTAAGGCTCTATCTTCTGATCACCGTCCGTCTAGAGACGACGAAAGGAAAAGAATTGAA 871
||||| | | ||| ||||||||| ||||||||||||| || ||| ||||||||||||||
Sbjct 177 GCTAAAGTTTTATTTTCTGATCATTGTCCGTCTAGAGATGATGAACGGAAAAGAATTGAA 236
Query 872 ACCACGGGTGGATATGTTGATACGTTTCACGGTGTTTGGAGAATCCAGGGATCTTTAGCT 931
|||||||| ||||||||||||||||||||| || | ||||||||||||||||| |||| |
Sbjct 237 ACCACGGGAGGATATGTTGATACGTTTCAC-GT-TGTGGAGAATCCAGGGATCCTTAGTT 294
Query 932 GTGTCGAGAGGGATCGGAGATGCTCAACTTAAGAAATGGGTTATAGCTGAACCAGAGACA 991
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTGCCAAGAGGAATCGGAGATGCTCAACTTAAGAAATGGGTTATAGCTGAACCAGAGACA 354
Query 992 AAGATCTCGAGAATTGAGCAGGACCATGAGTTCTTGATCTTGGCGTCAGATGGTTTATGG 1051
|||||||||||| ||||||| |||||||||||||| |||||||| ||| |||||||||||
Sbjct 355 AAGATCTCGAGAGTTGAGCATGACCATGAGTTCTTAATCTTGGCATCACATGGTTTATGG 414
Query 1052 GATAAGGTGAGTAACCAAGAAGCAGTAGACATTGCTCGTCCCTTATGCTTAGGAACCGAG 1111
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 415 GATAAGGTGAGTAACCAAGAAGCAGTAGACATTGCTCGTCCCTTCTGCTTACGAACCGAG 474
Query 1112 AAGCCATTGTTGTTAGCAGCCTGTAAGAAGCTTGTCGATCTCTCGGCTTCACGAGGCTCG 1171
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 475 AAGCCATTGTTGTTAGCAGCTTGTAAGAAGCTTGTTGATCTCTCGGCTTCACGAGGCTCG 534
Query 1172 TCGGATGATATCAGTGTGATGTTGATCCCTTTGCGCCAGTTCGTATAGAAGATGAGTGGC 1231
| |||||||||||||||||||||||||| |||||||||||| ||||||| | ||| |||
Sbjct 535 TTTGATGATATCAGTGTGATGTTGATCCCATTGCGCCAGTTCATATAGAAAA-GAGAGGC 593
Query 1232 ATCT 1235
||||
Sbjct 594 ATCT 597
Score = 250 bits (135), Expect = 3e-65
Identities = 164/178 (92%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 482 ATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGATATTT 541
||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGGATCGGTTCTCCACTATCACCAATCTTCATGGAGATCGTAAACAGGCAATATTT 60
Query 542 GGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCGGCTAAGAACTTAGAT 601
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGAGTCTATGTTGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCAGCTAAGAACTTAGAT 120
Query 602 AAGAACATTGTAGAAGAAATAGTTGGTTTAAGAGACGAGTCTG-AGGTAGCTGACGCG 658
|||||||||||||||||| |||||||| |||| |||||| || || ||||||| |||
Sbjct 121 AAGAACATTGTAGAAGAAGTAGTTGGTAAAAGACACGAGT-TGGAGATAGCTGAAGCG 177
> AT4G08260.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:5200847-5201865 FORWARD LENGTH=639
Length=639
Score = 553 bits (299), Expect = 2e-156
Identities = 350/375 (93%), Gaps = 2/375 (1%)
Strand=Plus/Plus
Query 845 AGAGACGACGAAAGGAAAAGAATTGAAACCACGGGTGGATATGTTGATACGTTTCACGGT 904
||||| || ||| |||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 267 AGAGATGATGAACGGAAAAGAATTGAAACCACGGGAGGATATGTTGATACGTTTCAC-GT 325
Query 905 GTTTGGAGAATCCAGGGATCTTTAGCTGTGTCGAGAGGGATCGGAGATGCTCAACTTAAG 964
| ||||||||||||||||| |||| |||| | ||||| |||||||||||||||||||||
Sbjct 326 -TGTGGAGAATCCAGGGATCCTTAGTTGTGCCAAGAGGAATCGGAGATGCTCAACTTAAG 384
Query 965 AAATGGGTTATAGCTGAACCAGAGACAAAGATCTCGAGAATTGAGCAGGACCATGAGTTC 1024
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 385 AAATGGGTTATAGCTGAACCAGAGACAAAGATCTCGAGAGTTGAGCATGACCATGAGTTC 444
Query 1025 TTGATCTTGGCGTCAGATGGTTTATGGGATAAGGTGAGTAACCAAGAAGCAGTAGACATT 1084
|| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 445 TTAATCTTGGCATCACATGGTTTATGGGATAAGGTAAGTAACCAAGAAGCAGTAGACATT 504
Query 1085 GCTCGTCCCTTATGCTTAGGAACCGAGAAGCCATTGTTGTTAGCAGCCTGTAAGAAGCTT 1144
||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 505 GCTCGTCCCTTCTGCTTACGAACCGAGAAGCCATTGTTGTTAGCAGCTTGTAAGAAGCTT 564
Query 1145 GTCGATCTCTCGGCTTCACGAGGCTCGTCGGATGATATCAGTGTGATGTTGATCCCTTTG 1204
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 565 GTTGATCTCTCGGCTTCACGAGGCTCGTTTGATGATATCAGTGTGATGTTGATCCCATTG 624
Query 1205 CGCCAGTTCGTATAG 1219
|||||||||||||||
Sbjct 625 CGCCAGTTCGTATAG 639
Score = 230 bits (124), Expect = 4e-59
Identities = 138/145 (95%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 482 ATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGATATTT 541
||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1 ATGGAGGATCGGTTCTCCGCTATCACCAATCTTCATGGAGATCATAAACAGGCAATATTT 60
Query 542 GGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCGGCTAAGAACTTAGAT 601
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGAGTCTATGTTGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCAGCTAAGAACTTAGAT 120
Query 602 AAGAACATTGTAGAAGAAATAGTTG 626
|||||||||||||||||| ||||||
Sbjct 121 AAGAACATTGTAGAAGAAGTAGTTG 145
Score = 169 bits (91), Expect = 8e-41
Identities = 113/124 (91%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 683 GACGCAGCGTTTCTTAAGGAGAAAGATGTCAAGGGTGGTTCGTGCTGTGTCACGGCTTTG 742
|||||| |||||||||||||| ||| | | ||||||||||| | ||||||||||||||||
Sbjct 145 GACGCAACGTTTCTTAAGGAGGAAGGTTTTAAGGGTGGTTCATCCTGTGTCACGGCTTTG 204
Query 743 GTTAGCGAAGGGAACCTTGTTGTGTCTAATGCCGGTGACTGTCGCGCTGTTATGAGTGTA 802
||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 205 GTTAGCGAAGGGAGCCTTGTTGTGTCAAACGCCGGTGACTGTCGTGCTGTTATGAGTGTA 264
Query 803 GGAG 806
||||
Sbjct 265 GGAG 268
> AT1G07160.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:2197908-2199748 REVERSE LENGTH=1460
Length=1460
Score = 516 bits (279), Expect = 3e-145
Identities = 643/816 (79%), Gaps = 35/816 (4%)
Strand=Plus/Plus
Query 401 ACGCCgagggaggagagtagag-aggttgagagagaAGGTGATGGTTACTCTGTTTATTG 459
|||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||
Sbjct 392 ACGCCGAGGGAGGAGAGTAGAGCA-GTGGAGAGGGAAGGTGATGGTTACTCTGTTTATTG 450
Query 460 TAAGAGAGG-AAGAAGAGAAGCTATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATG 518
|||||||| || |||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 451 CAAGAGAGGTAA-AAGAGAAGCTATGGAGGATCGTTTCTCTGCCATCACTAATCTTCAAG 509
Query 519 GAGATCGTAAACAGGCGATATTTGGAGTCTATGATGGTCATGGAGGAGTTAA-AGCGGCT 577
|||||| |||||||| ||||| ||||||||||||||||| |||||| || |||||||
Sbjct 510 GAGATCCCAAACAGGCAATATTCGGAGTCTATGATGGTCACGGAGGACC-AACAGCGGCT 568
Query 578 GAGTTTGCGGCTAAGAACTTA-GATAAG-AACATTGTAGAAGAAATAGTTGGTTTAAGAG 635
|||||||||||||||||||| | || | |||||| | | || ||||||||| || |
Sbjct 569 GAGTTTGCGGCTAAGAACTTGTG-TA-GTAACATTCTTGGCGAGATAGTTGGTGGGAG-G 625
Query 636 A-CGAGTCTGAGGTAGCTGACGCGGTGAAACGCGGTTA-CTTGACAACAGACGCAGCGTT 693
| |||||| || | | || || || ||||| ||||| || | | || || | | |||
Sbjct 626 AACGAGTCAAAGATTGAAGAAGCTGTAAAACGTGGTTATCTAG-CGACTGATTCTGAGTT 684
Query 694 TCTTAAGGAGAAAGATGTCAAGGGTGGTTCGTGCTGTGTCACGGCTTTGGTTAGCGAAGG 753
||| ||||| ||| | || ||||| || |||||||||||||||||| || | ||||| ||
Sbjct 685 TCTCAAGGAAAAAAACGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGACGG 744
Query 754 GAACCTTGTTGTGTCTAATGCCGGTGACTGTCGCGCTGTTATGAGTGTAGGAGG-TGTGG 812
|| ||||| ||| | ||||| |||||||| || |||||| |||| || ||||| | | |
Sbjct 745 AAATCTTGTGGTGGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGAT-TCG 803
Query 813 CTAAGGCTCT--ATCTTCTGATCACCGTCCGTCTAGAGACGACGAAAGGAAA-AGAATTG 869
| |||| || | ||||||| ||||| || || ||||| || ||| | ||| |||||||
Sbjct 804 CGGAGGC-CTTGA-CTTCTGACCACCGCCCTTCCAGAGATGATGAACG-AAACAGAATTG 860
Query 870 AAACCACGGGTGGATATGTTGATACGTTTCACG-GTGTTTGGAGAATCCAGGGATCTTTA 928
| | | |||| || ||||| ||||| || || ||||||||||||| || ||||| |||
Sbjct 861 AGAGCTCGGGCGGTTATGTGGATACATT-CAATAGTGTTTGGAGAATTCAAGGATCATTA 919
Query 929 GCTGTGTCGAGAGGGATCGGAGATGCTCAACTTAAGA-AATGGGTTATAGCTGAACCAGA 987
|| || || ||||| || ||||||||||| || || | ||||| | ||| ||||||||||
Sbjct 920 GCGGTATCTAGAGGAATAGGAGATGCTCATCTCAA-ACAATGGATAATATCTGAACCAGA 978
Query 988 GACAAAGAT-CTCGAGAATTGAGCAGGACCATGAGTTCTTGATCTTGGCGTCAGATGGTT 1046
|| ||| || ||| |||| | | | || |||||||||||||| || |||||||||
Sbjct 979 GATAAATATTCTCC-GAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGATGGTC 1037
Query 1047 TATGGGATAAGGTGAGTAACCAAGAAGCAGTAGACATTGCTCGTCCCTTATGCTTAGGAA 1106
||||||| ||||| ||||| || || ||||||||||| ||||| || || ||| ||| |
Sbjct 1038 TATGGGACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCAAAGGGA 1097
Query 1107 CCGAGAAGCCATTGTTG---TTAGCAGCCT-GTAAGAAGCTTGTCGATCTCTCGGCT-TC 1161
|||| || | | | || || | || | |||||||| || || ||||| | | ||
Sbjct 1098 CCGATCAGAAACGGAAGCCATT-GCTGGCTTGCAAGAAGCTCGTTGACCTCTCTG-TATC 1155
Query 1162 ACGAGGCTCGTCGGATGATATCAGTGTGATGTTGAT 1197
||||||||| | ||| ||||| ||||||||||||||
Sbjct 1156 ACGAGGCTCCTTGGACGATATTAGTGTGATGTTGAT 1191
> AT3G27140.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:10006891-10008174 REVERSE LENGTH=738
Length=738
Score = 483 bits (261), Expect = 3e-135
Identities = 307/329 (93%), Gaps = 3/329 (1%)
Strand=Plus/Plus
Query 920 GGATCTTTAGCTGTGTCGAGAGGGATCGGAGATGCTCAACTTAAGAAATGGGTTATAGCT 979
||||| |||| |||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 280 GGATCCTTAGTTGTGCCAAGAGGAATCGGAGATGCTCAACTTAAGAAATGGGTTATAGCT 339
Query 980 GAACCAGAGACAAAGATCTCGAGAATTGAGCAGGACCATGAGTTCTTGATCTTGGCGTCA 1039
|||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||
Sbjct 340 GAACCAGAGACAAAGATCTCGAGAGTTGAGCATGACCATGAGTTCTTAATCTTGGCATCA 399
Query 1040 GATGGTTTATGGGATAAGGTGAGTAACCAAGAAGCAGTAGACATTGCTCGTCCCTTATGC 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 400 CATGGTTTATGGGATAAGGTGAGTAACCAAGAAGCAGTAGACATTGCTCGTCCCTTCTGC 459
Query 1100 TTAGGAACCGAGAAGCCATTGTTGTTAGCAGCCTGTAAGAAGCTTGTCGATCTCTCGGCT 1159
||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 460 TTACGAACCGAGAAGCCATTGTTGTTAGCAGCTTGTAAGAAGCTTGTTGATCTCTCGGCT 519
Query 1160 TCACGAGGCTCGTCGGATGATATCAGTGTGATGTTGATCCCTTTGCG-CCAGTTCGTATA 1218
||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 520 TCACGAGGCTCGTTTGATGATATCAGTGTGATGTTGATCCCATTGCGGCCAGTTCGTATA 579
Query 1219 GAAGATGAGTGGCATCTTAGAAGAT-TTT 1246
||| | ||| ||||||||||||||| |||
Sbjct 580 GAAAA-GAGAGGCATCTTAGAAGATGTTT 607
Score = 241 bits (130), Expect = 2e-62
Identities = 163/179 (91%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 482 ATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGATATTT 541
||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGGATCGGTTCTCCACTATCACCAATCTTCATGGAGATCGTAAACAGGCAATATTT 60
Query 542 GGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCGGCTAAGAACTTAGAT 601
|||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 61 GGAGTCTATGTTGGTCATGGAGGAGTTAAAGCGGCTGAGTGTCCAGCTAAGAACTTAGAT 120
Query 602 AAGAACATTGTAGAAGAAATAGTTGGTTTAAGAGACGAGTCTG-AGGTAGCTGACGCGG 659
|||||||||||||||||| |||||||| |||| |||||| || || ||||||| ||||
Sbjct 121 AAGAACATTGTAGAAGAAGTAGTTGGTAAAAGACACGAGT-TGGAGATAGCTGAAGCGG 178
Score = 150 bits (81), Expect = 3e-35
Identities = 95/102 (93%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 715 GGGTGGTTCGTGCTGTGTCACGGCTTTGGTTAGCGAAGGGAACCTTGTTGTGTCTAATGC 774
||||||||| | ||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 177 GGGTGGTTCATCCTGTGTCACGGCTTTGGTTAGCGAAGGGAGCCTTGTTGTGTCAAACGC 236
Query 775 CGGTGACTGTCGCGCTGTTATGAGTGTAGGAGGTGTGGCTAA 816
|||||||||||| ||||||||||||||||||||||| |||||
Sbjct 237 CGGTGACTGTCGTGCTGTTATGAGTGTAGGAGGTGTAGCTAA 278
> AT5G28176.1 | Symbols: | transposable element gene | chr5:10160233-10160736
REVERSE LENGTH=504
Length=504
Score = 366 bits (198), Expect = 3e-100
Identities = 301/349 (86%), Gaps = 13/349 (4%)
Strand=Plus/Plus
Query 135 ctctttctcatcgcaaacctcaaacctcttctccttcctctccttccACCACCGTTTCTT 194
||||||||||| ||||||||| ||| ||||||||||||||||| || |||||||||||||
Sbjct 114 CTCTTTCTCATTGCAAACCTCCAACATCTTCTCCTTCCTCTCCATCAACCACCGTTTCTT 173
Query 195 CTCCTAAATCGCCGTTTCGTCTCCGTTTCCAGAAACCTCCGTCCGGATTCGCTCCTGCTC 254
|||| ||||||||||||||||| ||||| |||||||||| || |||||| |
Sbjct 174 CTCCGAAATCGCCGTTTCGTCTTTGTTTCGAGAAACCTCCATCTAGATTCG-----G--- 225
Query 255 CGTTATCGTTTGGATCTGAGTCTGTTTCTGCATCGTCTCCTCCGGGAGGTGTTTT-GAAG 313
|||||||||||||||||| ||||||||||||||||||| ||||| || ||||| ||
Sbjct 226 -GTTATCGTTTGGATCTGACTCTGTTTCTGCATCGTCTCTTCCGGAAGAAGTTTTAAAAA 284
Query 314 AGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATTTGTAGCTCCGATT 373
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 285 AGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGATGGATTTGTAGCTCCGATT 344
Query 374 TCGTCGGCGGCGGCGGCTGTGGCTGCAACGCCgagggaggagagtagagaggttgagaga 433
|| || ||| | ||| |||| ||| ||||||||||| ||| ||||||||| |||
Sbjct 345 TCTTCATCGGTTGA---TGTAGCTGTGACGTCGAGGGAGGAGTGTAAAGAGGTTGAAAGA 401
Query 434 gaAGGTGATGGTTACTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGCTA 482
|||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 402 GAAGGTGATGATTATTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGCTA 450
> AT1G32720.1 | Symbols: | Cytochrome C oxidase polypeptide VIB
family protein | chr1:11834902-11836631 FORWARD LENGTH=552
Length=552
Score = 178 bits (96), Expect = 1e-43
Identities = 145/168 (86%), Gaps = 5/168 (3%)
Strand=Plus/Plus
Query 316 GAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATTTGTAGCTCCGATTTC 375
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 96 GAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGATGGATTTGTAACTCCGATTT- 154
Query 376 GTCGGCGGCGGCGGCTGTGGCTGCAACGCCgagggaggaga-gtagagaggttgagagag 434
| | |||| | ||| ||| ||| |||||||||| | ||||||||||||| ||||
Sbjct 155 -T-TTCATCGGCTGATGTAACTGTGACGTCGAGGGAGGA-ATGTAGAGAGGTTGAAAGAG 211
Query 435 aAGGTGATGGTTACTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGCTA 482
||| | ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 212 AAGATAATGATTATTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGCTA 259
> AT1G29620.1 | Symbols: | Cytochrome C oxidase polypeptide VIB
family protein | chr1:10347363-10349017 FORWARD LENGTH=441
Length=441
Score = 135 bits (73), Expect = 8e-31
Identities = 108/124 (87%), Gaps = 5/124 (4%)
Strand=Plus/Plus
Query 316 GAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATTTGTAGCTCCGATTTC 375
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 GAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGATGGATTTGTAGCTCCGATTTC 179
Query 376 GTCGGCGGCGGCGGCTGTGGCTGCAACGCCgagggaggaga-gtagagaggttgagagag 434
|| |||| || ||| ||| ||| |||||||||| | ||||||||||||| ||||
Sbjct 180 TTCATCGGC--CGA-TGTAACTGTGACGTCGAGGGAGGA-ATGTAGAGAGGTTGAAAGAG 235
Query 435 aAGG 438
||||
Sbjct 236 AAGG 239
> AT2G14270.1 | Symbols: | Cytochrome C oxidase polypeptide VIB
family protein | chr2:6045579-6046045 FORWARD LENGTH=345
Length=345
Score = 124 bits (67), Expect = 2e-27
Identities = 101/117 (86%), Gaps = 3/117 (3%)
Strand=Plus/Plus
Query 366 CTCCGATTTCGTCGGCGGCGGCGGCTGTGGCTGCAACGCCgagggaggagagtagagagg 425
|||||||||| || |||| | | ||| ||| ||| ||||||||||| |||||||||
Sbjct 170 CTCCGATTTCTTCATCGGC--C-GATGTAGCTATGACGTCGAGGGAGGAGTGTAGAGAGG 226
Query 426 ttgagagagaAGGTGATGGTTACTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGCTA 482
|||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 227 TTGAAAGAGAAGGTGATGGTTATTTTGTTTATTGTAAGAGAGGAAGAAGAGAAGCTA 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5