BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481948
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30360.1 | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-inte... 2176 0.0
AT2G30362.1 | Symbols: | other RNA | chr2:12937351-12939638 FO... 1886 0.0
AT5G45820.1 | Symbols: CIPK20, SnRK3.6, PKS18 | CBL-interacting... 122 8e-27
> AT2G30360.1 | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting
protein 4 | chr2:12936979-12938834 REVERSE LENGTH=1856
Length=1856
Score = 2176 bits (1178), Expect = 0.0
Identities = 1462/1594 (92%), Gaps = 39/1594 (2%)
Strand=Plus/Plus
Query 1 ATTATTCTATTGAACTTATCTTTTTTaaaaaaaGCTTCCGCGTTACACCTTAAATTCTCC 60
|||||||||| ||||||||| ||||| ||||||||||||||||| || | | ||||||
Sbjct 9 ATTATTCTATCGAACTTATC-TTTTT---AAAAGCTTCCGCGTTACGCCATCACTTCTCC 64
Query 61 ACCATTTAAATACCT-AACCAC-TTC--T-AAAATTCTTATTCCATAAAAAGCAAACACA 115
||||||||||||||| |||||| ||| | ||| |||||||||||||||||| ||| ||
Sbjct 65 ACCATTTAAATACCTAAACCACTTTCTTTCAAATTTCTTATTCCATAAAAAGTAAATTCA 124
Query 116 CCCAACaaaa--aaaaaaaaaGACAA-AGAAGAAGAATTCGCTTACGTGTTCTTCACATC 172
|||||||| ||||||||| | || |||||||||||| |||||||||||| |||||||
Sbjct 125 --CAACAAAACCAAAAAAAAA-AAAAGAGAAGAAGAATTAGCTTACGTGTTCATCACATC 181
Query 173 TGAATTACGCGCAAACGAAATCAGATTCAAATTCTCCGGCGAAGTCTTCCAATTCATCAA 232
|| ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 182 TGCATTACGCGCAAACGAAA-CAGATTCAAATTCTCCGGCGAAGTTTTCTTATTCATCAA 240
Query 233 TCAATCTCTGGCCTT-AACAATCATGCCAGAGATCGAGATTATCC-CCTGCGGCGGCGAC 290
||||||||||| || | ||||||||||||||||||||||| || || || ||||||||
Sbjct 241 TCAATCTCTGG-ATTCATCAATCATGCCAGAGATCGAGATT-GCCGCCGGCAGCGGCGAC 298
Query 291 AACAACGCCGCCTTATTCGGCAAATACGAGCTCGGAAAGCTTCTCGGGTGCGGCGCATTC 350
||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 299 AACAACGACGCCTTATTCGGTAAATATGAGCTCGGAAAGCTTCTCGGATGCGGCGCATTC 358
Query 351 GCTAAAGTCTTCCACGCACGTGATCGTCGTAACGGTCAAAGCGTCGCCGTGAAAATCCTC 410
|| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 359 GCCAAAGTCTTCCACGCACGTGATCGTCGTACCGGCCAAAGCGTCGCCGTGAAAATCCTC 418
Query 411 AACAAGAAGAAACTCCTAACAAATCCAGCTCTCGCCAACAACATCAAACGCGAGATCTCA 470
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 AACAAGAAAAAACTCCTCACAAATCCAGCTCTAGCCAACAACATCAAACGCGAGATCTCA 478
Query 471 ATCATGAGACGATTATCACATCCAAACATCGT-TAGACTCCACGAAGTAATGGCGACAAA 529
||||||||| ||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 479 ATCATGAGAAGATTATCTCATCCAAACATCGTCAAG-CTCCACGAAGTAATGGCGACAAA 537
Query 530 GGCGAAGATCTTCTTCGCGATGGAGTTTGTTAAAGGAGGTGAGTTATTCAACAAAATCTC 589
| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 538 ATCAAAGATCTTCTTCGCAATGGAGTTTGTTAAAGGAGGAGAACTATTCAACAAAATCTC 597
Query 590 AAAACATGGACGTCTTAGCGAAGAACTCAGCCGTAGATACTTCCAACAATTAATCTCCGC 649
|||||||||||||||||||||||| | ||||| ||||| ||||| ||| | ||||||||
Sbjct 598 AAAACATGGACGTCTTAGCGAAGATTTAAGCCGGAGATATTTCCAGCAACTGATCTCCGC 657
Query 650 TGTTGGTTATTGTCACGCTCGCGGTGTTTACCACCGCGATCTCAAACCGGAGAATCTGTT 709
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 658 CGTTGGTTATTGCCACGCTCGCGGTGTTTACCACCGCGATCTCAAACCAGAGAATCTATT 717
Query 710 AATAGACGAAAACGGAAACTTAAAAGTTTCCGATTTCGGTCTTAGCGCGTTAACGGATCA 769
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 718 AATAGACGAAAACGGAAACTTAAAAGTTTCCGATTTCGGTCTAAGCGCGTTAACGGATCA 777
Query 770 GATCCGACCCGACGGGTTATTACATACCTTGTGTGGTACTCCGGCGTACGTTGCGCCGGA 829
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GATCCGACCCGATGGGTTGTTACATACCTTGTGTGGTACTCCGGCGTACGTTGCGCCGGA 837
Query 830 GATTCTATCTAAAAAGGGATATGAAGGTGCTAAAGTTGATGTATGGTCTTGCGGAATCGT 889
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 838 GATTCTATCTAAAAAAGGATATGAAGGTGCTAAAGTTGATGTATGGTCTTGTGGAATCGT 897
Query 890 CTTGTTCGTTCTCGCCGCCGGTTATTTACCGTTTAACGATCCGAATCTGATGAATATGTA 949
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 898 CTTGTTCGTTCTCGTCGCCGGTTATTTACCGTTTAACGATCCGAATGTGATGAATATGTA 957
Query 950 TAAGAAGATTTATAAAGGAGAGTATCGTTTTCCTCGTTGGATGTCTCAAGATCTGAAACG 1009
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 TAAGAAGATTTATAAAGGAGAGTATCGTTTTCCTCGTTGGATGTCTCCAGATCTGAAACG 1017
Query 1010 TTTCATTTCTCGTCTTCTAGATATTAATCCTGAGACTAGAATCACCATTGATGAGATTTT 1069
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATTCGTTTCTCGTCTTTTAGATATTAATCCTGAGACTAGAATCACCATTGATGAGATTTT 1077
Query 1070 GAAAGATCCTTGGTTTGTTAAAGGAGGTCTTAAGCAAATCAAGTTCCA---TGACGAGAT 1126
|||||||||||||||||||| ||||||| |||| || ||||||||||| |||||||||
Sbjct 1078 GAAAGATCCTTGGTTTGTTAGAGGAGGTTTTAAACAGATCAAGTTCCACGATGACGAGAT 1137
Query 1127 TGATGATTGTGAGAAAGATCAGAAA-GTGGA--AGAATCTGTGAAGAGTTTAAACGCGTT 1183
|| ||| |||||| | ||| || | |||| ||||||||||||||||||||||
Sbjct 1138 CGAAGATC---AGAAAG-TG-GAATCGTC-ACTAGAAGCTGTGAAGAGTTTAAACGCGTT 1191
Query 1184 TGATTTGATTTCTTACTCGTCGGGATTAGATTTGTCGGGATTGTTTGATGGCTGTAGTAA 1243
||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1192 TGATTTGATTTCTTACTCGTCGGGATTGGATTTGTCGGGATTGTTTGCTGGTTGTAGTAA 1251
Query 1244 TTCG-GTTGGGGAGTCAGAGAGGTTTTTATCGGAGAAGTCGCCGGAGAAATTGGCggagg 1302
|||| || || || || ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1252 TTCGAGT-GGTGAATCGGAGAGGTTTTTATCGGAAAAGTCGCCGGAGATGTTGGCGGAGG 1310
Query 1303 aagtggagaggtttgcgagagaggagaatttgaggatgaagaagaagaaggaagaagagT 1362
|||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1311 AAGTGGAGGGGTTTGCGAGAGAGGAGAATCTGAGGATGAAGAAGAAGAAGGAGGAAGAGT 1370
Query 1363 ATGGGTTTGAAATGGAAGGGCAAAATGGGAAATTTGTTATCGGGATTTGTATTTCGCGGT 1422
|||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1371 ATGGGTTTGAGATGGAGGGGCAAAATGGGAAATTTGGTATCGGGATTTGTATTTCGCGGT 1430
Query 1423 TGAATGATTTGCTTGTGGTGGTGGAGGCACGGCGGAGAGGTGGTGATGGTGATTGTTATA 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 TGAATGATTTGCTTGTGGTGGTGGAGGCACGGCGGAGAGGTGGTGATGGTGATTGTTATA 1490
Query 1483 AGGAGATGTGGAATGATAAACTCAGGGTTCAACTTATTCGCGTTTGCGATCAGACGTCGT 1542
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AGGAGATGTGGAATGGTAAACTCAGGGTTCAACTTATTCGCGTTTGCGATCAGACGTCGT 1550
Query 1543 CAA-A--CGCAGTTATTTAAAAGAACGCTATGAA 1573
||| | ||| | |||||||||||||||||||||
Sbjct 1551 CAACAAACGCGGCTATTTAAAAGAACGCTATGAA 1584
Score = 226 bits (122), Expect = 6e-58
Identities = 146/157 (93%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 1605 AATATATGTATTTAAATACAGTACCAAATTGTAGGCATCTATTTTGTGCTTTTTGATAAA 1664
||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct 1695 AATGTATGTATTTAAATACTGTACCAAATTGTAGGTATCTATTTTGTGCTTTTTGAT-CA 1753
Query 1665 ATGTATAACTATGTAC-AC-ACAAGTATAAAATTGCATTTGTAGATACTT-ACTCTTTTG 1721
|||| | ||||||||| || |||||| ||||||||||||||||||||||| |||||||||
Sbjct 1754 ATGTGTTACTATGTACAACAACAAGTCTAAAATTGCATTTGTAGATACTTCACTCTTTTG 1813
Query 1722 TATAATGTAGAAAATGTTCTTCTATTTATAGTTTGGA 1758
|||||||||||||||||||||||||||||||||||||
Sbjct 1814 TATAATGTAGAAAATGTTCTTCTATTTATAGTTTGGA 1850
> AT2G30362.1 | Symbols: | other RNA | chr2:12937351-12939638
FORWARD LENGTH=1512
Length=1512
Score = 1886 bits (1021), Expect = 0.0
Identities = 1232/1332 (92%), Gaps = 21/1332 (2%)
Strand=Plus/Minus
Query 155 TTACGTGTTCTTCACATCTGAATTACGCGCAAACGAAATCAGATTCAAATTCTCCGGCGA 214
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 TTACGTGTTCATCACATCTGCATTACGCGCAAACGAAA-CAGATTCAAATTCTCCGGCGA 1263
Query 215 AGTCTTCCAATTCATCAATCAATCTCTGGCCTT-AACAATCATGCCAGAGATCGAGATTA 273
||| ||| |||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1262 AGTTTTCTTATTCATCAATCAATCTCTGG-ATTCATCAATCATGCCAGAGATCGAGATT- 1205
Query 274 TCC-CCTGCGGCGGCGACAACAACGCCGCCTTATTCGGCAAATACGAGCTCGGAAAGCTT 332
|| || || ||||||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 1204 GCCGCCGGCAGCGGCGACAACAACGACGCCTTATTCGGTAAATATGAGCTCGGAAAGCTT 1145
Query 333 CTCGGGTGCGGCGCATTCGCTAAAGTCTTCCACGCACGTGATCGTCGTAACGGTCAAAGC 392
||||| |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 1144 CTCGGATGCGGCGCATTCGCCAAAGTCTTCCACGCACGTGATCGTCGTACCGGCCAAAGC 1085
Query 393 GTCGCCGTGAAAATCCTCAACAAGAAGAAACTCCTAACAAATCCAGCTCTCGCCAACAAC 452
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1084 GTCGCCGTGAAAATCCTCAACAAGAAAAAACTCCTCACAAATCCAGCTCTAGCCAACAAC 1025
Query 453 ATCAAACGCGAGATCTCAATCATGAGACGATTATCACATCCAAACATCGT-TAGACTCCA 511
||||||||||||||||||||||||||| ||||||| |||||||||||||| || |||||
Sbjct 1024 ATCAAACGCGAGATCTCAATCATGAGAAGATTATCTCATCCAAACATCGTCAAG-CTCCA 966
Query 512 CGAAGTAATGGCGACAAAGGCGAAGATCTTCTTCGCGATGGAGTTTGTTAAAGGAGGTGA 571
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||
Sbjct 965 CGAAGTAATGGCGACAAAATCAAAGATCTTCTTCGCAATGGAGTTTGTTAAAGGAGGAGA 906
Query 572 GTTATTCAACAAAATCTCAAAACATGGACGTCTTAGCGAAGAACTCAGCCGTAGATACTT 631
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||
Sbjct 905 ACTATTCAACAAAATCTCAAAACATGGACGTCTTAGCGAAGATTTAAGCCGGAGATATTT 846
Query 632 CCAACAATTAATCTCCGCTGTTGGTTATTGTCACGCTCGCGGTGTTTACCACCGCGATCT 691
||| ||| | |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 845 CCAGCAACTGATCTCCGCCGTTGGTTATTGCCACGCTCGCGGTGTTTACCACCGCGATCT 786
Query 692 CAAACCGGAGAATCTGTTAATAGACGAAAACGGAAACTTAAAAGTTTCCGATTTCGGTCT 751
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CAAACCAGAGAATCTATTAATAGACGAAAACGGAAACTTAAAAGTTTCCGATTTCGGTCT 726
Query 752 TAGCGCGTTAACGGATCAGATCCGACCCGACGGGTTATTACATACCTTGTGTGGTACTCC 811
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 725 AAGCGCGTTAACGGATCAGATCCGACCCGATGGGTTGTTACATACCTTGTGTGGTACTCC 666
Query 812 GGCGTACGTTGCGCCGGAGATTCTATCTAAAAAGGGATATGAAGGTGCTAAAGTTGATGT 871
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 665 GGCGTACGTTGCGCCGGAGATTCTATCTAAAAAAGGATATGAAGGTGCTAAAGTTGATGT 606
Query 872 ATGGTCTTGCGGAATCGTCTTGTTCGTTCTCGCCGCCGGTTATTTACCGTTTAACGATCC 931
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 605 ATGGTCTTGTGGAATCGTCTTGTTCGTTCTCGTCGCCGGTTATTTACCGTTTAACGATCC 546
Query 932 GAATCTGATGAATATGTATAAGAAGATTTATAAAGGAGAGTATCGTTTTCCTCGTTGGAT 991
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GAATGTGATGAATATGTATAAGAAGATTTATAAAGGAGAGTATCGTTTTCCTCGTTGGAT 486
Query 992 GTCTCAAGATCTGAAACGTTTCATTTCTCGTCTTCTAGATATTAATCCTGAGACTAGAAT 1051
||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 485 GTCTCCAGATCTGAAACGATTCGTTTCTCGTCTTTTAGATATTAATCCTGAGACTAGAAT 426
Query 1052 CACCATTGATGAGATTTTGAAAGATCCTTGGTTTGTTAAAGGAGGTCTTAAGCAAATCAA 1111
|||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||
Sbjct 425 CACCATTGATGAGATTTTGAAAGATCCTTGGTTTGTTAGAGGAGGTTTTAAACAGATCAA 366
Query 1112 GTTCCA---TGACGAGATTGATGATTGTGAGAAAGATCAGAAA-GTGGA--AGAATCTGT 1165
|||||| ||||||||| || ||| |||||| | ||| || | |||| ||||
Sbjct 365 GTTCCACGATGACGAGATCGAAGATC---AGAAAG-TG-GAATCGTC-ACTAGAAGCTGT 312
Query 1166 GAAGAGTTTAAACGCGTTTGATTTGATTTCTTACTCGTCGGGATTAGATTTGTCGGGATT 1225
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 311 GAAGAGTTTAAACGCGTTTGATTTGATTTCTTACTCGTCGGGATTGGATTTGTCGGGATT 252
Query 1226 GTTTGATGGCTGTAGTAATTCG-GTTGGGGAGTCAGAGAGGTTTTTATCGGAGAAGTCGC 1284
||||| ||| |||||||||||| || || || || ||||||||||||||||| |||||||
Sbjct 251 GTTTGCTGGTTGTAGTAATTCGAGT-GGTGAATCGGAGAGGTTTTTATCGGAAAAGTCGC 193
Query 1285 CGGAGAAATTGGCggaggaagtggagaggtttgcgagagaggagaatttgaggatgaaga 1344
|||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 192 CGGAGATGTTGGCGGAGGAAGTGGAGGGGTTTGCGAGAGAGGAGAATCTGAGGATGAAGA 133
Query 1345 agaagaaggaagaagagTATGGGTTTGAAATGGAAGGGCAAAATGGGAAATTTGTTATCG 1404
|||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 132 AGAAGAAGGAGGAAGAGTATGGGTTTGAGATGGAGGGGCAAAATGGGAAATTTGGTATCG 73
Query 1405 GGATTTGTATTTCGCGGTTGAATGATTTGCTTGTGGTGGTGGAGGCACGGCGGAGAGGTG 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGATTTGTATTTCGCGGTTGAATGATTTGCTTGTGGTGGTGGAGGCACGGCGGAGAGGTG 13
Query 1465 GTGATGGTGATT 1476
||||||||||||
Sbjct 12 GTGATGGTGATT 1
> AT5G45820.1 | Symbols: CIPK20, SnRK3.6, PKS18 | CBL-interacting
protein kinase 20 | chr5:18586980-18588543 REVERSE LENGTH=1564
Length=1564
Score = 122 bits (66), Expect = 8e-27
Identities = 201/263 (76%), Gaps = 21/263 (8%)
Strand=Plus/Plus
Query 507 CTCCACGAAGTAATGGCGA-CAAAGGCGAAGATCT-TCTTCGCGATGGAGTTTGTTAAAG 564
||||| ||||||||||||| | ||| | ||||||| | ||||| ||||| | |||||||
Sbjct 366 CTCCATGAAGTAATGGCGAGC-AAGACAAAGATCTAT-TTCGCTATGGAATACGTTAAAG 423
Query 565 GAGGTGAG-TTATTCAACAAAATCTCAAAACATGG-ACGTCTTAGCGAAGAAC-TCAGC- 620
| |||||| || || | ||| |||| || | || | | |||| ||| ||| | ||
Sbjct 424 GCGGTGAGCTT-TTTGATAAAGTCTC-TAA-A-GGAAAG-CTTAAAGAA-AACAT-TGCT 476
Query 621 CGTAGATACTTCCAACAATTAATCTCCGCTGTTGGTTATTGTCA-CGCTCGCGGTGTTTA 679
|| | ||| ||||| ||||| ||| || | | |||||| || || ||||| |||||
Sbjct 477 CGAAAATATTTCCAGCAATTGATCGGAGCAATCGATTATTGCCATAGC-CGCGGAGTTTA 535
Query 680 CCACCGCGATCTCAAACCGGAGAATCTG-TTAATAGACGAAAACGGAAACTT-AAAAGTT 737
||||||||||||||||||||||||||| || ||||||||||||| | || |||| |
Sbjct 536 CCACCGCGATCTCAAACCGGAGAATCTTCTTC-TAGACGAAAACGGCGATTTGAAAA-TA 593
Query 738 TCCGATTTCGGTCTTAGCGCGTT 760
|| ||||| || |||||||||||
Sbjct 594 TCGGATTTTGGCCTTAGCGCGTT 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5