BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481961 Length=1780 Score E Sequences producing significant alignments: (Bits) Value AT2G30490.1 | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-... 2615 0.0 > AT2G30490.1 | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase | chr2:12993663-12995770 REVERSE LENGTH=1803 Length=1803 Score = 2615 bits (1416), Expect = 0.0 Identities = 1680/1805 (93%), Gaps = 28/1805 (2%) Strand=Plus/Plus Query 1 TCAGCAGCTTCTTCTGCTTTCAA-T-CACTCGCCGACGATTTTCTCACCGG--AAAAATT 56 ||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||| Sbjct 2 TCAGCAGCTTCTTCTGCTTTCAATTACTCTCGCCGACGATTTTCTCACCGGAAAAAAACA 61 Query 57 A-ATCATTGCGGATACACAAACTATAATGGACCTTCTCTTGTTGGAGAAGTCTTTAATCG 115 | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 62 ATATCATTGCGGATACACAAACTATAATGGACCTCCTCTTGCTGGAGAAGTCTTTAATCG 121 Query 116 CCGTCTTCGTGGCGGTGGTTCTCGCCACGGTGATTTCAAAGCTCCGCGGCAAGAAATTGA 175 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 122 CCGTCTTCGTGGCGGTGATTCTCGCCACGGTGATTTCAAAGCTCCGCGGCAAGAAATTGA 181 Query 176 AGCTACCTCCAGGTCCTATGCCGATTCCGATCTTCGGAAACTGGCTTCAAGTCGGAGATG 235 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 182 AGCTACCTCCAGGTCCTATACCAATTCCGATCTTCGGAAACTGGCTTCAAGTCGGAGATG 241 Query 236 ATCTTAACCACCGTAATCTCATCGATTACGCTAAAAAATTTGGCGATCTCTTCCTCCTCA 295 |||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct 242 ATCTCAACCACCGTAATCTCGTCGATTACGCTAAGAAATTCGGCGATCTCTTCCTCCTCC 301 Query 296 GGATGGGTCAGCGAAACCTAGTCGTCGTCTCTTCACCGGATCTGACTAAA-GAAGTACTC 354 | ||||||||||||||||||||||||||||| ||||||||||| || ||| ||||| ||| Sbjct 302 GTATGGGTCAGCGAAACCTAGTCGTCGTCTCCTCACCGGATCTAAC-AAAGGAAGTGCTC 360 Query 355 CACACACAAGGTGTTGAGTTTGGATCTAGAACGAGAAACATCGTGTTCGACATTTTCACC 414 | ||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 361 CTCACTCAAGGCGTTGAGTTTGGATCCAGAACGAGAAACGTCGTGTTCGACATTTTCACC 420 Query 415 GGGAAAGGTCAAGATATGGTGTTCACTGTTTACGGAGAGCATTGGAGGAAGATGAGAAGG 474 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 421 GGGAAAGGTCAAGATATGGTGTTCACTGTTTACGGCGAGCATTGGAGGAAGATGAGAAGA 480 Query 475 ATCATGACGGTTCCGTTCTTCACCAACAAAGTTGTTCAACAGAATCGTGAAGGTTGGGAA 534 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATCATGACGGTTCCTTTCTTCACCAACAAAGTTGTTCAACAGAATCGTGAAGGTTGGGAG 540 Query 535 TTCGAAGCAGCGAGTGTTGTTGAAGATGTGAAGAAGAATCCAGATTCTGCTACTAAAGGA 594 || |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 541 TTTGAAGCAGCTAGTGTTGTTGAAGATGTTAAGAAGAATCCAGATTCTGCTACGAAAGGA 600 Query 595 ATTGTGTTGAGGAAACGTTTGCAATTGATGATGTATAACAATATGTTCCGTATCATGTTC 654 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ATCGTGTTGAGGAAACGTTTGCAATTGATGATGTATAACAATATGTTCCGTATCATGTTC 660 Query 655 GATAGAAGATTTGAGAGTGAAGATGATCCTCTTTTTCTTAGGCTTAAGGCTTTGAATGGT 714 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 661 GATAGAAGATTTGAGAGTGAGGATGATCCTCTTTTCCTTAGGCTTAAGGCTTTGAATGGT 720 Query 715 GAGAGAAGTCGATTAGCTCAGAGCTTTGAGTACAACTATGGAGATTTCATCCCTATCCTT 774 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 721 GAGAGAAGTCGATTAGCTCAGAGCTTTGAGTATAACTATGGAGATTTCATTCCTATCCTT 780 Query 775 AGACCATTCCTTAGAGGTTATTTGAAGATTTGCCAAGATGTGAAGGATCGAAGAATTGCT 834 ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 781 AGACCATTCCTCAGAGGCTATTTGAAGATTTGTCAAGATGTGAAAGATCGAAGAATCGCT 840 Query 835 CTATTCAAGAAGTACTTTGTTGATGAGAGGAAGCAAATTGCGAGTTCTAAGCCTACAGGT 894 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CTTTTCAAGAAGTACTTTGTTGATGAGAGGAAGCAAATTGCGAGTTCTAAGCCTACAGGT 900 Query 895 AGTGAAGGATTGAAATGTGCCATTGATCATATCCTTGAAGCTGAACAGAAGGGAGAAATC 954 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 901 AGTGAAGGATTGAAATGTGCCATTGATCACATCCTTGAAGCTGAGCAGAAGGGAGAAATC 960 Query 955 AATGAGGACAACGTTCTTTACATCGTCGAGAACATCAACGTTGCTGCGATTGAGACAACA 1014 || |||||||| |||||||||||||||||||||||||| || || ||||||||||||||| Sbjct 961 AACGAGGACAATGTTCTTTACATCGTCGAGAACATCAATGTCGCCGCGATTGAGACAACA 1020 Query 1015 TTGTGGTCAATCGAATGGGGAATTGCGGAGCTGGTGAACCATCCTGAAATCCAGAGTAAG 1074 |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1021 TTGTGGTCTATCGAGTGGGGAATTGCAGAGCTAGTGAACCATCCTGAAATCCAGAGTAAG 1080 Query 1075 CTAAGGAATGAAATCGACACGGTTCTTGGACCGGGTGTGCAAGTGACTGAGCCTGAGCTT 1134 |||||||| ||| ||||||| ||||||||||||||||||||||| || |||||||| ||| Sbjct 1081 CTAAGGAACGAACTCGACACAGTTCTTGGACCGGGTGTGCAAGTCACCGAGCCTGATCTT 1140 Query 1135 CACAAGCTTCCATACCTTCAAGCAGTGATCAAGGAGACACTTCGTCTAAGAATGGCGATT 1194 ||||| ||||||||||||||||| ||| | |||||||| |||||||| |||||||||||| Sbjct 1141 CACAAACTTCCATACCTTCAAGCTGTGGTTAAGGAGACTCTTCGTCTGAGAATGGCGATT 1200 Query 1195 CCTCTCCTCGTGCCTCACATGAACCTCCACGACGCCAAGCTCGCTGGCTACGATATCCCA 1254 ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 1201 CCTCTCCTCGTGCCTCACATGAACCTCCATGATGCGAAGCTCGCTGGCTACGATATCCCA 1260 Query 1255 GCAGAAAGCAAAATCCTTGTCAATGCTTGGTGGCTAGCAAACAACCCCAACAGCTGGAAG 1314 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1261 GCAGAAAGCAAAATCCTTGTTAATGCTTGGTGGCTAGCAAACAACCCCAACAGCTGGAAG 1320 Query 1315 AAACCTGAAGAGTTTAGACCAGAGAGGTTCTTGGAAGAAGAAGCGCACGTGGAAGCGAAT 1374 || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 1321 AAGCCTGAAGAGTTTAGACCAGAGAGGTTCTTTGAAGAAGAATCGCACGTGGAAGCTAAC 1380 Query 1375 GGTAATGACTTCAGGTTTGTGCCGTTTGGTGTTGGACGTAGAAGCTGTCCCGGGATTATA 1434 |||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1381 GGTAATGACTTCAGGTATGTGCCATTTGGTGTTGGACGTCGAAGCTGTCCCGGGATTATA 1440 Query 1435 TTGGCATTGCCCATTTTGGGAATCACCATTGGAAGGATGGTCCAAAACTTCGAGCTGCTT 1494 ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||| Sbjct 1441 TTGGCATTGCCTATTTTGGGGATCACCATTGGTAGGATGGTCCAGAACTTCGAGCTTCTT 1500 Query 1495 CCTCCTCCAGGACAGTCTAAAGTGGATACTAGTGAGAAAGGTGGACAATTCAGCTTGCAC 1554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 CCTCCTCCAGGACAGTCTAAAGTGGATACTAGTGAGAAAGGTGGACAATTCAGCTTGCAC 1560 Query 1555 ATCCTTAACCACTCCACAATCGTTATGAAACCAAGGAACTTTTAAATTTTCTGCA-AAAA 1613 |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 1561 ATCCTTAACCACTCCATAATCGTTATGAAACCAAGGAACTGTTAAACTTTCTGCACAAAA 1620 Query 1614 A------TGACTTT-A-TATAATGA-TGTTTGTGAAATCTGTTGAA-TATTCCCATGTTT 1663 | ||| | | | || | | |||||||||||||||||||| ||||||| ||||| Sbjct 1621 AAAAGGATGAAGATGACTTTA-TAAATGTTTGTGAAATCTGTTGAAATATTCCCTTGTTT 1679 Query 1664 TGCTTTTGTGAGATGTTTT-GTGTAAAATGTCTTTAAATGGCTCGTTCTATCGATTGCAA 1722 ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| Sbjct 1680 TGCTTTTGTGAGATGTTTTTGTGTAAAATGTCTTTAAATGGTTCGTTCTA-CGATTGCAA 1738 Query 1723 TAAT--T-AGTGGTGCCCATTGTTTTGAATGGA-CATTG--ATG-TTCTATCATTTCAAA 1775 |||| | |||||||| |||||||||| ||||| || || || || |||||||| ||| Sbjct 1739 TAATAATTAGTGGTGCTCATTGTTTTGGATGGATCAATGTTATACTTATATCATTTGAAA 1798 Query 1776 ATCTC 1780 ||||| Sbjct 1799 ATCTC 1803 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88051755930 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5