BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482050
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31230.1 | Symbols: ATERF15, ERF15 | ethylene-responsive ele... 1219 0.0
> AT2G31230.1 | Symbols: ATERF15, ERF15 | ethylene-responsive element
binding factor 15 | chr2:13306593-13307475 REVERSE LENGTH=883
Length=883
Score = 1219 bits (660), Expect = 0.0
Identities = 761/810 (94%), Gaps = 5/810 (1%)
Strand=Plus/Plus
Query 25 aaaagaaaaaaaaaaaaaaCACTCATGGAATATTCCCAATCTTCCATGTATTCTTCTCCG 84
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 45 AAAAAAAAAAAAAAAAAAAAACTTATGGAATATTCCCAATCTTCCATGTATTCATCTCCA 104
Query 85 AGTTCTTGGAGCTCATCACAAGAATCACTCTTATGGAACGAGAGTTGTTTCTTGGATCAA 144
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 105 AGTTCTTGGAGCTCATCACAAGAATCACTCTTATGGAACGAGAGCTGTTTCTTGGATCAA 164
Query 145 TCTTCTGATCCTCAATCGTTCTTTTGCCCTAATTATGCTTACTCCGATGACTTTTTCTCA 204
|| ||||| |||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 165 TCATCTGAACCTCAAGCCTTCTTTTGCCCTAATTATGATTACTCCGATGACTTTTTCTCA 224
Query 205 TTTGAGTCACCGGAGATGATGAGTAAGGAAGAAATCCAAAACGGTGACGTTTCTAACTCC 264
|||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||
Sbjct 225 TTTGAGTCACCGGAGATGATGATTAAGGAAGAAATTCAAAACGGCGACGTTTCTAACTCC 284
Query 265 GAGGAGGAAGAAAAGATTGGAATTGATGAAGAAAGATCATACAGAGGAGTGAGGAAAAGG 324
|| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GAAGAAGAAGAAAAGGTTGGAATTGATGAAGAAAGATCATACAGAGGAGTGAGGAAAAGG 344
Query 325 CCGTGGGGGAAATTTGCAGCGGAGATAAGAGATTCAACGAGGAACGGAATTAGGGTTTGG 384
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 345 CCGTGGGGGAAATTTGCAGCGGAGATAAGAGATTCAACGAGGAATGGAATTAGGGTTTGG 404
Query 385 CTCGGGACATTCGACAAAGCTGAGGAAGCCGCCCTTGCTTATGATCAAGCGGCTTTTGCC 444
||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 405 CTCGGGACATTTGACAAAGCCGAGGAAGCCGCTCTTGCTTATGATCAAGCGGCTTTCGCC 464
Query 445 ACGAAAGGATCTCTAGCAACACTCAATTTCCCCGTGGAAGTGGTTAGAGAGTCGCTAAAG 504
|| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 465 ACAAAAGGATCTCTTGCAACACTTAATTTCCCGGTGGAAGTGGTTAGAGAGTCGCTAAAG 524
Query 505 AAAATGGAGAATGTGAATCTTCATGATGGAGGATCTCCGGTTATGGCCTTGAAGAGAAAA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AAAATGGAGAATGTGAATCTTCATGATGGAGGATCTCCGGTTATGGCCTTGAAGAGAAAA 584
Query 565 CATTCGCTTCGAAACCGGCCTAGAGGGAAAAAGAGAtcttcttcttcttcttcttctaat 624
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 585 CATTCTCTTCGAAACCGGCCTAGAGGGAAAAAGCGATCCTCTTCTTCTTCTTCTTCTTCT 644
Query 625 tcttcttcttcGTCGTCCTCTTATTCGTCATCCT-CGTCTTCAACATCAAG-A--AGTAG 680
||| |||||| || | ||||| ||| || | || | |||||||||||||| | |||||
Sbjct 645 TCTAATTCTTCTTCTTGCTCTTCTTCTTCGT-CTACTTCTTCAACATCAAGAAGTAGTAG 703
Query 681 TAAGCAGAGTGTTGTGAAGCAAGAAAGTGGTACACTTGTGGTTTTTGAAGATTTAGGTGC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TAAGCAGAGTGTTGTGAAGCAAGAAAGTGGTACACTTGTGGTTTTTGAAGATTTAGGTGC 763
Query 741 TGAGTATTTAGAACAACTTCTTATGAGCTCATGTTGATCTGGTAATTAATTTCAGCTAAA 800
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct 764 TGAGTATTTAGAACAACTTCTTATGAGCTCATGTTGATCTTGTAATTGATTTCAGCAAAA 823
Query 801 GCTACTATTAAACTTTAATTTTGTGATAAT 830
|| |||||||||||||||||||||||||||
Sbjct 824 GCCACTATTAAACTTTAATTTTGTGATAAT 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40438488335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5