BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482070 Length=1064 Score E Sequences producing significant alignments: (Bits) Value AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:13... 1439 0.0 AT2G31390.1 | Symbols: | pfkB-like carbohydrate kinase family ... 67.6 2e-10 > AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:13381910-13383470 FORWARD LENGTH=1125 Length=1125 Score = 1439 bits (779), Expect = 0.0 Identities = 1003/1103 (91%), Gaps = 47/1103 (4%) Strand=Plus/Plus Query 1 CCTTCTTATCTTCTTCTCTTCT-C-CAA--TCACT-CACAGAAACAAAACTGCTTTTGTC 55 |||||||||||||||||||||| | ||| | | | |||||||||||||||||||||||| Sbjct 29 CCTTCTTATCTTCTTCTCTTCTCCTCAACTTGAATACACAGAAACAAAACTGCTTTTGTC 88 Query 56 TCTCAAGTCCTTTGTCTTTTAAAAAGGTTTTGTTCTTGAACAAGAG-AAGAAAACAAGAG 114 ||||||||| |||||||| |||||||||| |||||||||||||| | ||| |||||| || Sbjct 89 TCTCAAGTCATTTGTCTTATAAAAAGGTTCTGTTCTTGAACAAGGGAAAG-AAACAAAAG 147 Query 115 GCTGAT-TTTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCCCACTTCTCA-G----- 167 |||||| |||||||||||||||||||||||||||||||||| |||||||| | Sbjct 148 GCTGATAACTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCTTACTTCTCAGGAAAAC 207 Query 168 ------G-AAA--------tttttttGAGAAATATGAAGATACAATGTGATGTGTGTGAG 212 | ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 208 CCTAAAGAAAATTTCTGTTTTTTTTTGAGAAATATGAAGATACAATGTGATGTGTGTGAG 267 Query 213 AAAGCTCCGGCCACGCTTATATGTTGTGCCGATGAAGCTGCTCTGTGCGCTAAATGTGAT 272 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 268 AAAGCTCCGGCCACGCTTATATGTTGTGCTGATGAAGCTGCTCTCTGCGCTAAATGTGAC 327 Query 273 GTTGAGGTTCATGCTGCTAATAAGTTAGCTAGTAAACACCAACGCCTTTTTCTTGACTCT 332 ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| Sbjct 328 GTTGAGGTTCATGCTGCTAATAAACTCGCTAGCAAACACCAACGCCTTTTTCTTGACTCT 387 Query 333 CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 388 CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT 447 Query 393 GTAGAGGATAGGGCTCTGCTCTGCAGAGACTGCGACGAGGCGACCCATGCACCAAATACT 452 ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 448 GTAGAGGATAGGGCTCTGCTCTGCAGAGATTGCGATGAGGCGACCCATGCGCCAAATACT 507 Query 453 CGCTCTGCTAATCACCAGCGTTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT 512 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 508 CGCTCTGCTAATCACCAGAGGTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT 567 Query 513 ATTTGCAGTCAAGAAGTGGAGAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT 572 | ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 568 AGTTGCAATCAAGAAGTGGAAAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT 627 Query 573 AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC 632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 628 AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC 687 Query 633 CGCTACTCTGATCTTGAGTGCAGTAATAAGCAGAAAGAGCAACTCGACCTCGGGGAGCTG 692 |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| Sbjct 688 AGCTACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGGAGCTG 747 Query 693 GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGCA 752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 748 GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTA 807 Query 753 GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGTTCATTCCTACAATAGACCT 812 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 808 GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGCTCATTCCTACAACAGACCT 867 Query 813 ATGAAGTCCAATGTACCCAACAAGAAGCAGAGACTTGAGTACCGGTATGATGATGATGAA 872 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 868 ATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTTGAGTACCGGTATGATGATGAAGAA 927 Query 873 GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATAGATGAA-CTAAATA-GCACTTAGT 930 ||||||||||||||||||||||||||||||||||| |||||| ||| || || ||| | Sbjct 928 GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATGGATGAATCTAC-TAAGCT-TTA-T 984 Query 931 TCGCATAT-GTCTCTACACGGGCTCATA-TATT-GT-T-TTCGCCTTGCTTTCTCCATGA 985 |||| | | || | || ||| | || | | ||||||||||||||||||||| Sbjct 985 AAT-ATATAG-CACTTGATTCGC--ATAGTCTTCGGCTCTTCGCCTTGCTTTCTCCATGA 1040 Query 986 TCTGGTTTGTGTATCACTGTA--TA-CAGGCTAAAACTTGGAAAA-CCTTATCATTTTAT 1041 |||| | |||||||||||||| || ||||||||||||||||||| |||||||||||||| Sbjct 1041 TCTGATATGTGTATCACTGTAAGTAGCAGGCTAAAACTTGGAAAAACCTTATCATTTTAT 1100 Query 1042 TAGCAAGTGATGCCTTGAATTGC 1064 |||||||||| ||||| |||||| Sbjct 1101 TAGCAAGTGAAGCCTTAAATTGC 1123 > AT2G31390.1 | Symbols: | pfkB-like carbohydrate kinase family protein | chr2:13383423-13386209 REVERSE LENGTH=1283 Length=1283 Score = 67.6 bits (36), Expect = 2e-10 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand=Plus/Minus Query 1020 TTGG-AAAACCTTATCATTTTATTAGCAAGTGATGCCTTGAATTGC 1064 |||| |||||||||||||||||||||||||||| ||||| |||||| Sbjct 1283 TTGGAAAAACCTTATCATTTTATTAGCAAGTGAAGCCTTAAATTGC 1238 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52108165710 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5