BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482168
Length=3201
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32400.1 | Symbols: GLR5, GLR3.7, ATGLR3.7 | glutamate recep... 4894 0.0
> AT2G32400.1 | Symbols: GLR5, GLR3.7, ATGLR3.7 | glutamate receptor
5 | chr2:13752584-13756853 REVERSE LENGTH=3261
Length=3261
Score = 4894 bits (2650), Expect = 0.0
Identities = 3029/3212 (94%), Gaps = 25/3212 (1%)
Strand=Plus/Plus
Query 1 GATGAATTTCTGGGCATGATTTGATCTCTCAAGTTTTTGTTTTTCTTCCTTTAGGAAGGT 60
|||||||||||||||||||||||||||||| || |||||||| |||||||||| | |
Sbjct 62 GATGAATTTCTGGGCATGATTTGATCTCTCTAG-TTTTGTTTCTCTTCCTTTA-GTA--- 116
Query 61 ATCTCCAGTCAAATCATGGtttttt------tttAGTTCTCGACTTCTCTTGTTAATAAT 114
|||||| |||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 117 ATCTCCTGTCAAATCATGGTTTTTTAAAAAAGATAGTTCTTGACTTCTCTTGTTAAAAAT 176
Query 115 TCGTTGCTTTGTCGTAAAATTTCCCTTTTTAAACTTATGCCTGCAAAGTGTTTGTGTATA 174
||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 177 TCGTTGCGTTGTCGTAAAATTTCCCTTTTTTAACTTATGCCTACAAAGTGTTTGCGTATA 236
Query 175 TTCCGCAGAGAGAACCTGAAGGTTGCTCAAAGAGGTCAAAGTTGGAAATTTTACCTTGCT 234
|||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 237 TTCCGCAGAGAGAACCAGAAGGTAGCTCAAAGAGGTCAAAGTTGGAAACTTTACCTTGCT 296
Query 235 TAGTTCTCTTTTCGTATCATCCTCAATGCTGAATGAAGAGACGCTAGATTTAAAAGAGAT 294
||||||||| || | |||||||||||||||||||||||| |||||||||||| |||||
Sbjct 297 TAGTTCTCTAATCTTCTCATCCTCAATGCTGAATGAAGAGTTGCTAGATTTAAATGAGAT 356
Query 295 GGTTCTAGTTCCAACACAAACTATTTTGAACTGGTCCTTACTTTGATTGCATTGTCTCCA 354
||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||
Sbjct 357 GGTTCTAGTTCCAACACAAACTA-TCTGAAGTGGTCCTTACTTTGATTGCATTATCTCCA 415
Query 355 TGGGGCTGGGCGTTGACCCATTTGTGGCTATTACGGCACTGATTCTGGTCATTCTGGTGG 414
|||| |||||| ||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct 416 TGGGACTGGGCATTGACCCATCTGTCGCTATTACGGCACTGATTGTGGTCATTCTGGTGG 475
Query 415 TTCCAATGGATTGCCAAAGGCCTCAAGTGGTGAACATCGGTGCTGTTTTCGCTTTTGATT 474
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct 476 TTCCAATGGATTGCCAAAGACCTCAACTGGTGAACATCGGTGCTGTTTTTGCTTTTGATT 535
Query 475 CGGTTGTCGGAAGAGCTGCAAAAGTAGCTCTCGAGGCAGCTGTCTCCGATGTCAACGCTG 534
||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||
Sbjct 536 CGGTTATCGGAAGAGCTGCAAAAGTAGCTCTAGAGGCAGCTGTTTCCGATGTGAACAATG 595
Query 535 ACCCAACCGTTCTCAAAGGAACGAAGCTACGGCT-TCTCATGGAGGATTCTGCCTGCAAT 593
| || | ||||||||| |||| |||||||||| | | |||||||||||||||||||||
Sbjct 596 ATAAAAGCTTTCTCAAAGAAACGGAGCTACGGCTAT-TAATGGAGGATTCTGCCTGCAAT 654
Query 594 GTCTTCCGTGGGTCCTTTGGAGCTTTTGAATTGCTTGAGAAAGAAGTGGTGGCTATGATC 653
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTCTTTCGTGGGTCCTTTGGAGCTTTTGAATTGCTTGAGAAAGAAGTGGTGGCTATGATC 714
Query 654 GGTCCAATTTCATCCTCTGTTGCTCATACAATATCCGATATTGCAAAAGGGCTCCACTTT 713
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 715 GGTCCAATTTCATCCTCTGTTGCTCATACAATTTCCGATATTGCAAAAGGGCTCCACTTT 774
Query 714 CCTCTTGTCTCATTTGCAGCAACTGATCCAACTCTCTCTGCCCTCCAATTTCCCTTCTTT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CCTCTTGTCTCATTTGCAGCAACTGATCCAACTCTCTCTGCCCTCCAATTTCCCTTCTTT 834
Query 774 CTTCGGACTACACCTAATGATGCCCACCAAATGTCTGCCCTTGTGGATCTTATCAATTTT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTTCGGACTACACCTAATGATGCCCACCAAATGTCTGCCCTTGTGGATCTTATCAATTTT 894
Query 834 TATGGTTGGAAAGAGGTGATATCAGTTTACTCTGATGATGAGCTCGGAAGAAATGGAATT 893
||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 895 TATGGATGGAAAGAAGTGATCTCAGTTTACTCGGATGATGAGCTCGGAAGAAATGGAGTT 954
Query 894 TCTGCTCTAGATGATGAACTGTACAAGAAAAGATCCAGAATTTCCTATAAAGTGCCGCTC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCTGCTCTAGATGATGAACTGTACAAGAAAAGATCCAGAATTTCCTATAAAGTGCCGCTC 1014
Query 954 TCAGTGCATTCTGATGAAAAAGTCCTTACTGATGCTTTGAACAAATCCAAGTCCATCGGT 1013
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1015 TCAGTTCATTCTGATGAAAAATTCCTTACTAATGCTTTGAACAAATCCAAGTCCATCGGT 1074
Query 1014 CCTCGGGTTTATATTCTTCATTTTGGTCCAGACCCATTGCTCAGAATTTTTGATATAGCG 1073
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1075 CCTCGAGTTTATATTCTTCATTTTGGTCCGGACCCATTGCTCAGAATTTTTGATATAGCG 1134
Query 1074 CAAAAGCTGCAGATGATGACCCATGAATACGTGTGGCTCGCCACAGACTGGCTCTCAGTT 1133
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1135 CAAAAGCTGCAGATGATGACCCATGAATACGTATGGCTCGCCACAGACTGGCTCTCTGTT 1194
Query 1134 ACTTTAGATTCTTCTTTGAGTGACAAAGGTACTTTAAAACGTCTTGAAGGAGTAGTGGGG 1193
|| |||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1195 ACCTTAGATTCTT-T--GAGTGACAAAGGTACTCTAAAACGCCTTGAAGGAGTAGTGGGG 1251
Query 1194 CTTCGTCAACACATCCCAGAATCCGAAAAGGTGCAACATTTCGCACAGAAACTGCAGAGC 1253
||||||||||| ||||||||||||| |||| || |||||||| | || ||||||||||||
Sbjct 1252 CTTCGTCAACATATCCCAGAATCCGTAAAGATGGAACATTTCACGCATAAACTGCAGAGC 1311
Query 1254 AACAGATCAATGAATGCCTACGCATTCCATGCCTATGATACAGTGTGGATGATTGCATAT 1313
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1312 AACAGATCAATGAATGCCTACGCATTACATGCCTATGATACAGTGTGGATGATTGCGCAT 1371
Query 1314 GGCATCGAG-AAGTTGCTGAATGAAGGAATCAACATAACGTTTTCTTACTCCGAAAAGTT 1372
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GGCATCGAGGAA-TTGCTGAATGAAGGAATCAACATAACGTTTTCTTACTCCGAAAAGTT 1430
Query 1373 ACTTCATGCACGAGGAACTAAACTGCACCTGGAGAAAATCAAATTTTTCAACAGCGGGGA 1432
|||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1431 ACTTCATGCACGGGGAACCAAACTGCACTTGGAGAAAATCAAATTTTTCAACAGTGGGGA 1490
Query 1433 GCTACTACTTGAGAAACTTCTGAAGGTGAACTTCACTGGTATAGCCGGTCAAGTTCAGTT 1492
| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1491 GTTACTACTTGAGAAACTTCTGAAAGTAAACTTTACTGGTATAGCCGGTCAAGTTCAGTT 1550
Query 1493 TGGTTCTGGCCGAAACGTCATTGGCTGTGACTACGAAATTATCAATGTAGACAAAACCGG 1552
|||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 1551 TGGTTCTGGCCGAAACGTTATCGGCTGTGACTACGAAATTATCAATGTAAACAAAACCGA 1610
Query 1553 TGTTCATACTGTGGGTTTCTGGTCGGAAAATGGAGGCTTTTCGGTTGGAGCCCCAAAAAC 1612
|||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1611 TGTTCATACTGTCGGTTTCTGGTCGAAAAATGGAGGCTTTTCGGTTGTAGCCCCAAAAAC 1670
Query 1613 CCGACATTCACAGAAGAAGACTAGCTTTGTTTCTGATGAAAAACTTGGAGACATAACCTG 1672
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1671 CCGTCATTCACAGAAGAAGACTAGCTTTGTTTCTGATGAAAAACTTGGAGATATAACCTG 1730
Query 1673 GCCTGGTGGTGGCCGTGAAAAGCCACGTGGTTGGGTCATTGCAGATTCTGCAGATCCATT 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 GCCTGGTGGTGGCCGTGAAAAGCCACGTGGTTGGGTCATTGCAGATTCTGCAGATCCATT 1790
Query 1733 GAAGATTGTTGTCCCAAGAAGAGTGAGTTTTGTTGAGTTTGTGACTGAAGAAAAGAACAG 1792
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1791 GAAGATTGTTGTCCCGAGAAGAGTGAGTTTTGTCGAGTTTGTGACTGAAGAAAAGAACAG 1850
Query 1793 TAGCCATCGGATCCAAGGATTTTGCATCGACGTCTTCATTGAAGCATTGAAGTTCGTCCC 1852
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1851 TAGCCATCGGATCCAAGGATTTTGCATCGATGTCTTCATTGAAGCATTAAAGTTCGTCCC 1910
Query 1853 TTACAGTGTTCCTTACATATTTGAGCCATTCGGGAATGGTCATTCAAGTCCTAATTACAA 1912
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1911 TTACAGTGTTCCTTACATATTTGAGCCTTTCGGGAATGGTCATTCAAGTCCTAATTACAA 1970
Query 1913 CCAGCTTATTCAAATGGTCACAGATGGCGTATATGATGCAGCTGTTGGGGATATTGCAAT 1972
||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1971 CCACCTTATTCAAATGGTCACGGATGGTGTATATGATGCTGCTGTTGGGGATATTGCAAT 2030
Query 1973 AGTCCCAAGCCGGTCCAAATTAGTGGATTTCTCGCAACCATATGCTTCCACAGGCCTTGT 2032
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2031 AGTCCCAAGCCGGTCCAAGTTAGTGGATTTCTCGCAGCCATATGCTTCCACAGGCCTTGT 2090
Query 2033 GGTGGTGATTCCAGCCAATGATGACAATGCAACTTGGATCTTTCTGAGACCCTTCACCAT 2092
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2091 AGTGGTGATTCCTGCTAATGATGACAATGCGACTTGGATCTTTCTGAGACCCTTCACCAG 2150
Query 2093 CCGGTTATGGTGTGTTGTTCTAGTTTCATTCCTGGTTATTGCCGTAGTCATCTGGATCCT 2152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 CCGGTTATGGTGTGTTGTTCTAGTTTCATTCCTGGTTATTGCCGTAGTCATCTGGATCCT 2210
Query 2153 CGAACATCGCATCAATGAAGATTTCAGAGGGCCACCCCGAAGACAATTGACCACAATGAT 2212
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
Sbjct 2211 CGAACATCGCATCAATGAAGATTTCAGAGGGCCACCCCGAAGACAACTCAGCACAATGCT 2270
Query 2213 CTTATTCAGCTTTTCAACTCTTTTCAAGAGAAACCAGGAAGATACGATAAGCAATCTAGC 2272
||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2271 CTTGTTCAGCTTCTCAACTCTTTTCAAGAGAAACCAGGAAGATACAATAAGTAATCTAGC 2330
Query 2273 AAGACTAGTGATGATTGTATGGCTCTTCCTATTGATGGTTCTAACTGCGAGCTACACAGC 2332
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2331 AAGACTAGTGATGATTGTATGGCTCTTCCTATTGATGGTTCTAACCGCGAGCTACACAGC 2390
Query 2333 GAACCTCACCTCAATCCTCACAGTTCAACAGCTTCCTTCTGCCATTACCGGCATCGACAG 2392
|||||||||||||||||||||||||||||||||||| ||||| |||||||| || || ||
Sbjct 2391 GAACCTCACCTCAATCCTCACAGTTCAACAGCTTCCCTCTGCTATTACCGGTATTGATAG 2450
Query 2393 CTTGCGGGCAAGTGAAGTGCCTATCGGGTACCAGGCTGGGACATTCACATTAGAGTATTT 2452
||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2451 CTTGCGGGCAAGTGAGGTACCTATCGGGTACCAGGCTGGGACGTTCACTTTAGAGTATTT 2510
Query 2453 AACCTACAGTCTTGGCATGGCTCGCTCTAGGCTAGTCCCACTTGACTCGACCGAGGAGTA 2512
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 2511 AACCTACAGTCTTGGCATGGCTCGGTCTAGACTGGTCCCACTTGACTCGACCGAGGAGTA 2570
Query 2513 TGAAAAGGCTCTAAAGCTAGGACCAACCAACTGGGGAGGTGTGGCTGCTATTGTCGACGA 2572
|||||||||||||||||| || |||||||| ||||||||||| ||||| |||||||||||
Sbjct 2571 TGAAAAGGCTCTAAAGCTGGGGCCAACCAATTGGGGAGGTGTTGCTGCCATTGTCGACGA 2630
Query 2573 ACTCCCTTACATCGAACTGTTTCTAGCAGAACGAACAGGCTTCAAGATTGTCGGAGAGCC 2632
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2631 ACTCCCTTACATCGAACTGTTTCTAGCAGAACGAACAGGCTTCAAGATTGTTGGAGAACC 2690
Query 2633 CTTTATGCACCGTGGTTGGGGATTTGCGTTTAAGAGAGATTCTCCACTGGCTATAGACAT 2692
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2691 CTTTATGCACCGTGGTTGGGGATTTGCGTTTAAGAGAGATTCTCCATTGGCTATAGACAT 2750
Query 2693 GTCAACAGCTATCTTGAAACTCTCTGAGACCAGGAAATTGCAAGAGATTCGAAAGAAATG 2752
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2751 GTCAACAGCTATCTTGAAACTCTCTGAGACGAGGAAATTGCAAGAAATTCGAAAGAAATG 2810
Query 2753 GTTATGCAAGAAGAATTGCGCAGAGAAATCAAATTGGAACCCAGAGCCAAACCAGCTTCA 2812
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2811 GTTATGCAAGACGAATTGCGCAGGGAAATCAAATTGGAACCCAGAGCCAAACCAGCTTCA 2870
Query 2813 TCTCAAGAGCTTCAAAGGGTTGTACCTTGTCTGCATTGCAATCACAGTCTCTGCGTTTAT 2872
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2871 TCTCAAAAGCTTCAAAGGGCTGTACCTTGTCTGCATTGCAATCACAGTCTCTGCGTTTTT 2930
Query 2873 AGTGTTTGTTCTCAGGATGATACGCCAATTTGTGCGGTACAGACGGATGGAGAGAACATG 2932
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2931 GGTGTTTGTTCTCAGGATGATACGCCAGTTCGTGCGGTACAGACGGATGGAGAGAACATC 2990
Query 2933 CTCGTTGCCACGCGCTTCTTGGTC-GTCTTCTCCTTCGAT-GCGGCTT-AGAGAATTGGT 2989
|||| ||||||||||||||||||| | |||||||| | || |||| || |||||||| ||
Sbjct 2991 CTCGATGCCACGCGCTTCTTGGTCAG-CTTCTCCTAC-ATTGCGG-TTGAGAGAATTAGT 3047
Query 2990 GTTTGATTTCGTGGAGTTTGTGGATGAGAAAGAAGAAGCTATCAAGAGAATGTTCAGAAG 3049
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3048 GTTTGATTTTGTGGAGTTTGTGGATGAGAAAGAAGAAGCTATTAAGAGAATGTTCAGAAG 3107
Query 3050 GAGTGATGACTCTAATAACAACCCATCTCATGTTGGGGAAGTCCAAGCTGATACAGAGGT 3109
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 3108 AAGCGATGACTCTAATAACAACCCATCTCATGTAGGGGAAGTCCAAGCTGATACTGAGGT 3167
Query 3110 ACCACGAAATTGATGAGTAGATTCCACTCTATAGGAAGAAAATTGTTATGTATATGAATT 3169
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 3168 ACCACGAAATTGATGAGTAGATTCCACTCTATAGGAAGAAAATTGTTATGTATAAGAACT 3227
Query 3170 AGATATAGCTAACATGTAAGTCAATATTCGAA 3201
||||||||||||||||||||||||||||||||
Sbjct 3228 AGATATAGCTAACATGTAAGTCAATATTCGAA 3259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159229877082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5