BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482188
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32640.1 | Symbols: | Lycopene beta/epsilon cyclase protein... 1757 0.0
> AT2G32640.1 | Symbols: | Lycopene beta/epsilon cyclase protein
| chr2:13846919-13850909 REVERSE LENGTH=2134
Length=2134
Score = 1757 bits (951), Expect = 0.0
Identities = 1089/1152 (95%), Gaps = 23/1152 (2%)
Strand=Plus/Plus
Query 25 TTGTCATGGTGGTTCTGCAAATTCAACAATTCAATGGGTTCGTTAATTCCGTATCAAGGG 84
||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 94 TTGTCATGGTGGTTCTGCAAATTCATCAGTTCAATGGGTTCGTTAGTTCCGTATCAAGGG 153
Query 85 CTCGGACAAACCGAGGAAGAAGGAGAGCTTCGAAGACAGTATGCGTT----CA-AA---- 135
||| |||||||| |||||||||||||||||||| |||||| |||||| || ||
Sbjct 154 CTCAGACAAACCAAGGAAGAAGGAGAGCTTCGACGACAGTGTGCGTTCAAACACAATTGG 213
Query 136 --------C--ACA-A-AAGATAATGGAGAAG-ATTTCAGTTGGTGGAGAAGCTGGAGGT 182
| ||| | |||||||||||| || |||||||||||||||||||||||||||
Sbjct 214 CTCCCTCTCTTACACAGAAGATAATGGAG-AGTATTTCAGTTGGTGGAGAAGCTGGAGGT 272
Query 183 GCTGGTGGTGCTTATTCTTACAATGCCTTGAAGAGACTTGACAATATTTGGTCCAACATA 242
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 273 GCTGGTGGTGCTTACTCTTATAATGCCTTGAAGAGACTTGACAATATTTGGTCCAACATA 332
Query 243 TGTACTCAACCGACAGGACCGCAAGAAACTCAGCAAATTGTTTCTAGGGTATCTGGTTTT 302
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 333 TGTACTCAACCAACAGGACCACAAGAAACTCAGCAAATTGTTTCTAGGGTATCTGGTTTT 392
Query 303 TCTCAAGATTATGGTATGGGGAATAATCTCGTTGGAACCTTTGACATAGTGGTTTGTGGG 362
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TCTCAAGATTATAGTATGGGGAATAATCTCGTTGGAACCTTTGACATAGTGGTTTGTGGG 452
Query 363 GGTACTTTGGGGATTTTTCTAGCCACGGCTCTATGTGCCAAGGGTTTAAGAGTCGCTGTG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GGTACTTTGGGGATTTTTCTAGCCACGGCTCTATGTGCCAAGGGTTTAAGAGTCGCTGTG 512
Query 423 GTGGAGAGAAATGCAATCAAAGGGAGAGATCAAGAATGGAATATCTCAAGAAAAGAGATG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GTGGAGAGAAATGCAATCAAAGGGAGAGATCAAGAATGGAATATCTCAAGAAAAGAGATG 572
Query 483 AAAGAGCTGATTGAAGTCGGAGTTTTAACCGAAGATGAGATCGAAGAAGTAATTGCAGCA 542
||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 573 AAAGAACTGACTGAAGTCAGAGTTTTAACCGAAGATGAGATCGAAGAAGTAATTGCTGCA 632
Query 543 AAGTTTAATCCGAACAGATGTGGGTTTGAGAATCTTGGTGATATATGGGTTGAAGATATT 602
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 633 AAGTTCAATCCGAACAGATGTGGATTTGAGAATCTTGGTGATATATGGGTTGAAGATATT 692
Query 603 CTGAACCTCGGCGTTTCCCCAGCTAAACTTGTGGAAACTGTGAAACGACGTTTTGTTTCT 662
|| |||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||
Sbjct 693 CTTAACCTCGGCGTTTCCCCAGCCAAACTTGTGGAAACTGTAAAACAACGTTTCATTTCT 752
Query 663 CTTGGTGGAGTCATATTAGAAGACTGCAGCCTCTCGAGCATCGTCATCTACGATGATTTA 722
|||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 753 CTTGGTGGAGTCATTTTAGAAGACTCCAGCCTCTCGAGCATCGTCATCTACAATGATTTA 812
Query 723 GCTGTTATGCAACTTTCTAAAGGTGACACATTATCTTCCCGTCTGGTCATCGATGCAATG 782
|||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 813 GCTGTTATGCAACTTTCTAAAGGTGACACATTATCTTCCCGTCTCGTTATTGATGCCATG 872
Query 783 GGAAACTTTTCTCCTATTCTGAAGCAGATCAAACGTGGTAGAAAGCCAGATGGAATGTGC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GGAAACTTTTCTCCTATTCTGAAGCAGATCAAACGTGGTAGAAAGCCAGATGGAATGTGC 932
Query 843 CTTGTTGTTGGATCTTGTGCTCATGGGTTTAAGGAGAACTCATCAAGCGACGTTATATAT 902
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 933 CTTGTTGTTGGATCTTGTGCTCATGGGTTTAAAGAGAACTCATCAAGCGACGTTATATAT 992
Query 903 AGTAGTTCATCGGTGACCAAAGTTGCAGATTCTAATGTACAACTCTTTTGGGAGGCCTTC 962
|| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 993 AGCAGTTCATCGGTGACCAGAGTTGCAGATTCCAATGTACAACTCTTTTGGGAGGCTTTC 1052
Query 963 CCGGCTGGCTCTGGTCCATTAGACCGCACTACTTACATGTTCACTTACACTGAACCGCAA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 CCGGCTGGCTCTGGTCCATTAGACCGCACTACTTACATGTTCACTTACACTGAACCGCAA 1112
Query 1023 TCAACATCTCCGAGTTTAGAGGATTTACTCGAAGAATACTGGAAATTAATGCCAAAATAC 1082
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1113 TCAACATCTCCGAGTTTAGAGGATTTACTCGAAGAATACTGGAAACTGATGCCAAAATAC 1172
Query 1083 CAAGGAGTCTCTCTTGATGAATTGGAAATACTGAGAGTTGTATACGGAATCTTTCCTACT 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CAAGGAGTCTCTCTTGATGAATTGGAAATACTGAGAGTTGTATACGGAATCTTTCCTACA 1232
Query 1143 TACCGGAATAGT 1154
||||| ||||||
Sbjct 1233 TACCGAAATAGT 1244
Score = 1192 bits (645), Expect = 0.0
Identities = 786/851 (92%), Gaps = 21/851 (2%)
Strand=Plus/Plus
Query 1241 AGTCCATTGCAAGCAGCATTTGATCGTGTTCTACAGTTTGGTGATGCTAGCGGCATTCAG 1300
||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1242 AGTCCGTTGCCAGCTGCATTTGATCGTGTTCTACAGTTTGGTGATGCTAGCGGTATTCAA 1301
Query 1301 TCACCTGTTTCATTTGGGGGTTTTGGAAGTTTGACCAGACACCTTGGAAGATTGTCCAAT 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TCACCTGTTTCATTTGGGGGTTTTGGAAGTTTGACCAGACACCTTGGAAGATTGTCCAAT 1361
Query 1361 GGAATCTATGAAGCAATAAACGGGGATTTTCTGGACACTGACAGCTTATCAAAGCTAAAT 1420
||||||||||| |||||| | || ||| |||||||| |||||||||||||||||||||||
Sbjct 1362 GGAATCTATGACGCAATAGATGGAGATCTTCTGGACTCTGACAGCTTATCAAAGCTAAAT 1421
Query 1421 CCTTATATGCCAAACTTGAGTGCATCATGGTTGTTTCAAAGAGCAATGTCTGCAAAGCAA 1480
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1422 CCTTATATGCCAAACTTGAGCGCATCATGGCTGTTTCAAAGAGCAATGTCTGCAAAGCAA 1481
Query 1481 CAACTCGATGTTTCCCCTGGCTTCACCAACGAGCTTCTCCATGTGAATTTCAGTTGCATG 1540
|| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1482 CAGCTCGATGTTTCCCGTGGCTTCACCAATGAGCTTCTCCATGTAAATTTCAGTTGCATG 1541
Query 1541 CAGAGATTGGGCGATCCAGTTCTCAGACCATTTCTTCAGGATATAATTCAGTTTGGTCCT 1600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1542 CAGAGATTGGGCGATCCAGTTCTCAGACCATTTCTTCAGGATATAATACAGTTTGGTCCT 1601
Query 1601 CTAGCGAAGACATTAGGCCTTGTCATGCTGACCAAACCTCAGATAATTCCGTCAATATTC 1660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 CTAGCAAAGACATTAGGCCTTGTCATGCTGACCAAACCTCAGATAATTCCGTCAATATTC 1661
Query 1661 AGACAGGTTGGGATACCTGTTCTGCTTGATTGGTCTGTTCATTTTTTCATGCTGGGCTTG 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AGACAGGTTGGGATACCTGTTCTGCTTGATTGGTCTGTTCATTTTTTCATGCTGGGCTTG 1721
Query 1721 TATACGTTCCTCTCGGCATACATTGATCCATTGCTGAGGCCGTCTTTAGAAGGA-TTACC 1779
|||||| |||||||||||||||| ||||||||||| ||||||||||| |||||| || ||
Sbjct 1722 TATACGCTCCTCTCGGCATACATCGATCCATTGCTAAGGCCGTCTTTGGAAGGACTTCCC 1781
Query 1780 TTCAAAGACGAAGTTCGAATGGATGAGACGTCTCGAGGCTTGGAAATATGGAGCTGGCCT 1839
| ||||||||| |||||| |||| |||| |||||||||| ||||||||||||||||||||
Sbjct 1782 T-CAAAGACGAGGTTCGAGTGGAAGAGATGTCTCGAGGCCTGGAAATATGGAGCTGGCCT 1840
Query 1840 CGATTATGAGTTGTGATTCTGTTCGTATTTCTGAAGAATGATACCCTCATCATCACTGGC 1899
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1841 CGATTATGAGTTGTGATTCTGTTCGTATTTCTGAAGAATGGTACCCTCATCGTCACTGGC 1900
Query 1900 TTTTGAGAAAGTATAAAAGTTCA-CA-ACATCATCGTCCATAGTACTTCACAAGCTTCAT 1957
|||| ||||| ||||||||||| || | |||| | || |||||||||| |||||||||
Sbjct 1901 TTTTT-GAAAGAATAAAAGTTCATCAGATATCAACATC--TAGTACTTCATAAGCTTCAT 1957
Query 1958 AAATGGTCTGGCTTATATACACAGAATCAACATTTCAGTCCTTAGATCTG-------G-- 2008
||||| ||||||| ||||||||||||||||||| ||| ||||||||| || |
Sbjct 1958 AAATG-TCTGGCTCATATACACAGAATCAACATCTCAATCCTTAGATTTGATTCACAGGG 2016
Query 2009 TTCTAGAAAACTCCTTCAATATCCGCTTATAC-C---TATATTCGAAAAGCTTTGTTCTA 2064
||||||||||||||||||||||| | |||||| | || ||||||||||||||||||||
Sbjct 2017 TTCTAGAAAACTCCTTCAATATCAGTTTATACACACCTACATTCGAAAAGCTTTGTTCTA 2076
Query 2065 TGAACAGACAA 2075
|||||||||||
Sbjct 2077 TGAACAGACAA 2087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102860916705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5