BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482197
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32690.1 | Symbols: ATGRP23, GRP23 | glycine-rich protein 23... 599 1e-170
> AT2G32690.1 | Symbols: ATGRP23, GRP23 | glycine-rich protein
23 | chr2:13863717-13864596 REVERSE LENGTH=880
Length=880
Score = 599 bits (324), Expect = 1e-170
Identities = 456/516 (88%), Gaps = 24/516 (5%)
Strand=Plus/Plus
Query 1 CTGTCTTCGATCTCTCTTTCATATTCATCATATAAAACTCGAACCAGTTAATTATGGGTT 60
|||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 7 CTGTCTTCGATCTCTCTTTCATATACACCATATAAAA--CGAACCAGTTAATTATGGGTT 64
Query 61 TAATTTCCGGGAAGGTGTGTGTGTTTATCTTTGTATTCGCTCTAGTCGCCGAATTTGCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 65 TAATTTCCGGGAAGGTGTGTGTGTTTATCTTTGTATTCGCTCTAGTCGCTGAATTTTCGT 124
Query 121 TCGGAAATGTTGAGGTTAACGACGACAAACACTTTTTTCACAAACCACGTCCATTCTTGC 180
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |
Sbjct 125 TCGGAAATGTTGAGGTTAACGACGACAAACACTTTTTCCACAAACCTCGTCCATTTTTAC 184
Query 181 ACAAACCTCGTCCATTCTTCCACAAACATGGCATTTACAAGAAGGGTTTTGGTAAGGGTT 240
||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 185 ACAAACCTCGTCCATTCCTCCACAAGCATGGCATTTACAAGAAAGGTTTCGGTAAGGGTT 244
Query 241 TGggcggcggaggcggtctaggaggcgg---tgg---agg------t-----c-taggag 282
||||||| |||||||||||||| ||||| ||| ||| | | ||||||
Sbjct 245 TGGGCGGTGGAGGCGGTCTAGGCGGCGGAGGTGGTCTAGGAGGCGGTGGTGGCCTAGGAG 304
Query 283 gcggtggaggtttaggcggtggtggcggtctaggaggaggagggggtctaggaggcggta 342
||||||||||||||||||||||||| ||| |||| || || || ||||||||||||||||
Sbjct 305 GCGGTGGAGGTTTAGGCGGTGGTGGAGGTTTAGGCGGCGGTGGTGGTCTAGGAGGCGGTA 364
Query 343 gtggtttgggaggaggagggggtctaggaggcggtagcggtttaggaggaggagggggtc 402
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 365 GCGGTTTGGGAGGAGGAGGGGGTCTAGGAGGCGGTAGCGGTTTGGGAGGAGGAGGGGGTC 424
Query 403 taggcggaggtggtggtggtggtgtt-ggaggaggaggaggatttggcggtggtggc-gg 460
|||| || ||||||||||||||| || ||||||||||| ||||| || ||||| | | ||
Sbjct 425 TAGGAGGTGGTGGTGGTGGTGGT-TTAGGAGGAGGAGGTGGATTGGGTGGTGGAG-CTGG 482
Query 461 aggaggtttcggcggtggagccggtggtggatttgg 496
|||||| | ||| ||||| || || || ||| ||||
Sbjct 483 AGGAGGATACGGTGGTGGTGCTGGAGGAGGACTTGG 518
Score = 475 bits (257), Expect = 2e-133
Identities = 458/549 (83%), Gaps = 38/549 (7%)
Strand=Plus/Plus
Query 237 GGTTTGggcggcggaggcggtctaggaggcggtggaggtctaggaggcggtggaggttta 296
||||| |||||||| || ||||||||||||||| | ||| | ||||| || || ||| ||
Sbjct 331 GGTTTAGGCGGCGGTGGTGGTCTAGGAGGCGGTAGCGGTTTGGGAGGAGGAGGGGGTCTA 390
Query 297 ggcggtggtggcggtctaggaggaggagggggtctaggaggcggtagtggt-ttgg--ga 353
|| || ||| ||||| | ||||||||||||||||||||||| ||| ||||| ||| |
Sbjct 391 GGAGGCGGTAGCGGTTTGGGAGGAGGAGGGGGTCTAGGAGGTGGTGGTGGTGGTGGTTTA 450
Query 354 ggaggagggggtcta-ggaggcggtagcggtttaggagg--a-ggagggggt-ctaggcg 408
|||||||| ||| | | || ||| | | | |||||| | || || ||| || || |
Sbjct 451 GGAGGAGGAGGTGGATTG-GGTGGTGGAGCTGGAGGAGGATACGGTGGTGGTGCT-GGAG 508
Query 409 gagg---tggtggtggtggt-g--ttggaggaggaggaggatttggcggtggtggcggag 462
|||| ||| || || ||| | |||||||||||||||| ||||||||||| || ||||
Sbjct 509 GAGGACTTGGAGGCGGAGGTGGAATTGGAGGAGGAGGAGGCTTTGGCGGTGGAGGGGGAG 568
Query 463 gaggtttcggcggtggagccggtggtggatttggtaaaggcattggtggtggaggagg-- 520
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GAGGATTCGGGGGCGGAGCCGGTGGTGGATTTGGTAAAGGCATTGGTGGTGGAGGAGGTC 628
Query 521 -t--------tt-tggtggtggtggCCATCACTGATGACGGCATTAATTAAGGCTCATGC 570
| || || |||||||||||||||||||||| | | | ||||||||||
Sbjct 629 TTGGAGGAGGTTATGTTGGTGGTGGCCATCACTGATGA--G---T-GGTGAGGCTCATGC 682
Query 571 TCATGCATTCGTAACGTTGTTATATTATTTAATCAAAT-GATAAATGAT-AATTAATTAT 628
||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||||
Sbjct 683 TCATGCATTCGTAACGTTGTTATATTATTTAATTAAATGGA-AAATGATAAATTAATTAT 741
Query 629 TACAATAAAATGATACATTAGCAATTGTGTATGTCGTTATTTT-ATTTTGAGTCGCATTG 687
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 742 TGCAATAAAATGATACATTAGCAATTGTGTATGTCGTTATTTTTATTTTGAGTCGCATTG 801
Query 688 TATGATGATTCCATATGTTCTGCTTTGGTTGGTTTCAAGTTTGGTTAATAAAATGGTTAC 747
|||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct 802 TATGCTGATTCCATATGTTCGGCTTTGGTCGGTTTCAAGTGTGGTTAATAAAATGGTTAT 861
Query 748 TTTACTTTT 756
|||||||||
Sbjct 862 TTTACTTTT 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36771395604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5