BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482201
Length=2873
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32700.7 | Symbols: LUH | LEUNIG_homolog | chr2:13866772-138... 2922 0.0
> AT2G32700.7 | Symbols: LUH | LEUNIG_homolog | chr2:13866772-13872157
FORWARD LENGTH=3001
Length=3001
Score = 2922 bits (1582), Expect = 0.0
Identities = 1832/1947 (94%), Gaps = 40/1947 (2%)
Strand=Plus/Plus
Query 955 GGATTAAACCCTGGAGTGAGTGGTCTTCCTCTAAAGGGATGGCCATTAACTGGCATTGAG 1014
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1036 GGATTAAACCCTGGAGTGAGTGGTCTTCCTTTAAAGGGATGGCCATTAACTGGCATCGAG 1095
Query 1015 CAAATCCGACCAGGTTTAGGAGGCCCTCAGGTTCAGAAATCTTTTCTACAAAATCAAAGT 1074
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 CAGATGCGACCAGGTTTAGGAGGCCCTCAGGTTCAGAAATCTTTTCTACAAAATCAAAGT 1155
Query 1075 CAATTTCAGCTCTCGCCGCAGCACCACCAACAACAGATCTTGGCTCAGGTTCAAGCGCAA 1134
||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 1156 CAATTTCAGCTCTCGCCGCAGCAGCAACAACATCAGATGTTGGCTCAGGTTCAAGCGCAA 1215
Query 1135 GGAAATATGACTAATTCACCCATGTATGGTGGTGACATGGACCCTCGAAGATTTACAGGA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GGAAATATGACTAATTCACCCATGTATGGTGGTGACATGGACCCTCGAAGATTTACAGGA 1275
Query 1195 TTACCTAGAGGAAACCTTAATCCGAAAGATGGCCAACAAAATGCAAATGATGGATCTATA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 TTACCTAGAGGAAACCTTAATCCGAAAGATGGCCAACAAAATGCAAATGATGGATCTATA 1335
Query 1255 GGGTCCCCAATGCAGTCAAGTTCGTCAAAGCATATCAGCATGCCGCCAGTACAGCAATCT 1314
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GGGTCCCCCATGCAGTCAAGTTCGTCAAAGCATATCAGCATGCCGCCAGTACAGCAATCT 1395
Query 1315 TCTTCTCAGCAACAAGATAACTTACTAGCCCAGCAATCACAACAGAACAACCGCAAAAGA 1374
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1396 TCTTCTCAGCAACAAGATCACTTACTATCCCAGCAATCACAACAGAACAACCGCAAAAGA 1455
Query 1375 AAAGGGCCTTCCTCTTCTGGTCCTGCTAACAGTACAGGGACGGGAAACACTGTTGGCCCA 1434
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1456 AAAGGGCCTTCCTCTTCTGGTCCTGCTAACAGCACAGGGACAGGAAACACTGTTGGCCCA 1515
Query 1435 TCCAACTCACAGCCATCGACTCCATCAACGCATACCCCTGTTGATGGAGTTGCTATACCT 1494
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1516 TCCAACTCACAGCCATCGACTCCGTCAACGCATACCCCTGTTGATGGAGTTGCTATAGCT 1575
Query 1495 GGTAACATGCACCATGTGAATAGCATGCCAAAAGGACCAATGATGTATGGTTCTGATGGG 1554
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1576 GGTAACATGCACCATGTGAATAGCATGCCAAAAGGGCCAATGATGTATGGTTCTGATGGG 1635
Query 1555 ATCGGTGGTCTTGCATCATCAGCAAATCAACTGCTGCAGGATGACATGGAACGGTTTGGA 1614
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1636 ATCGGTGGTCTTGCATCATCAGCAAATCAACTGCTGCAGGATGACATGGACCAGTTTGGA 1695
Query 1615 GATGTGGGAGCCCTAGAAGATAATGTAGAATCATTTTTGTCCCAAGATGATGGAGATGGA 1674
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1696 GATGTGGGAGCTCTAGAAGATAATGTAGAATCATTTTTGTCCCAAGATGATGGAGACGGA 1755
Query 1675 GGAAGCTTGTTTGGCACCCTAAAGCGGAACCCTTCTGAGCATACCGAAACCTCAAAGGGT 1734
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
Sbjct 1756 GGAAGCTTGTTTGGCACCCTAAAGCGGAACTCTTCTGTGCATACCGAAACCTCAAAGCCT 1815
Query 1735 TTCAGTTTCAACGAGGTTAGTTCTATAAGAAAAAGTGTGAGTAAGGTCATTTGCTGTAAC 1794
||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 1816 TTCAGTTTCAATGAGGTTAGTTGTATAAGAAAAAGTGCCAGTAAGGTCATTTGCTGTAGC 1875
Query 1795 TTCTCATCTGATGGGAAGTTGTTGGCTAGCGCTGGACATGATAAGAAGGTTTTTATATGG 1854
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1876 TTCTCATATGATGGGAAGTTGTTGGCTAGCGCTGGACATGATAAGAAGGTATTTATATGG 1935
Query 1855 AACATGGAAACACTACAAGTTGAGAGCACTCCGGAAGAACATGCTCATATCATCACAGAT 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1936 AACATGGAAACACTACAAGTTGAGAGCACTCCGGAAGAACATGCTCATATCATCACAGAT 1995
Query 1915 GTGCGCTTCAGACCTAATTCAACCCAACTGGCAACGTCATCATTCGACAAAACGATCAAA 1974
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1996 GTTCGCTTCAGACCGAATTCAACTCAACTGGCAACGTCATCATTCGACAAAACAATCAAA 2055
Query 1975 ATCTGGGATGCTTCTGATCCTGGTTACTTCCTACGAACAATTTCTGGTCATGCTGCACCT 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056 ATCTGGGATGCTTCTGATCCTGGTTACTTCCTACGAACAATTTCTGGTCATGCTGCACCT 2115
Query 2035 GTTATGTCCATTGATTTTCATCCTAAGAAAACCGAGCTTTTATGCTCTTGTGATAGCAAC 2094
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2116 GTTATGTCCATTGATTTTCATCCTAAGAAAACCGAGCTTTTATGCTCCTGTGATAGCAAC 2175
Query 2095 AATGATATTCGCTTTTGGGACATAAACGCTTCTTGCGTTCGTGCTG----GGG--CTAGC 2148
||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 2176 AATGATATTCGCTTTTGGGACATAAACGCCTCTTGCGTTCGTGCTGTAAAGGGGGCTAGC 2235
Query 2149 ACGCAAGTACGGTTCCAGCCAAGAACAGGACAGTTGTTAGCTGCAGCGTCGGAAAACACT 2208
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 2236 ACGCAAGTACGTTTCCAGCCAAGAACAGGACAGTTTTTAGCTGCAGCGTCAGAAAATACT 2295
Query 2209 GTGTCAATTTTTGATATTGAAAATAATAACAAACGGGTCCACATTTTTAAGGGACATTCC 2268
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2296 GTGTCAATTTTTGATATTGAAAATAATAACAAACGGGTCAACATTTTTAAGGGACATTCC 2355
Query 2269 TCAAATGTACATTCTGTTTGTTGGAGCCCAAACGGAGAGTTGGTAGCTTCTGTTAGTGAA 2328
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2356 TCAAATGTACATTCTGTTTGTTGGAGCCCAAACGGAGAGTTGGTGGCGTCTGTTAGTGAA 2415
Query 2329 GACGCTGTAAAATTATGGTCACTGAGTTCAGGAGATTGCGTCCACGAGCTT-GAAAACAG 2387
||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |||
Sbjct 2416 GACGCTGTAAAATTATGGTCACTGAGTTCAGGAGATTGCATCCACGAGCTTAGCAA-CAG 2474
Query 2388 TGGAAACAAGTTCCACTCTTGT-GTTTTCCACCCTAGCTATCCCGATCTCTTGGTCATCG 2446
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 2475 TGGAAACAAGTTCCACTCT-GTTGTTTTTCACCCTAGCTATCCCGATCTCTTGGTCATCG 2533
Query 2447 GTGGCTACCAGTCAATAGAGCTGTGGAACACAATGGAGAACAAATGTATGACGATAGCGG 2506
||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 2534 GTGGCTATCAGGCTATAGAGCTGTGGAACACAATGGAGAACAAATGTATGACGGTAGCAG 2593
Query 2507 GTCACGAGTGTGTGATCTCTGCCTTGGCTCAGTCGCCTTCTACAGGAATGGTAGCGTCTG 2566
| |||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct 2594 GCCACGAGTGTGTGATCTCTGCCTTGGCTCAGTCGCCTTCGACGGGAGTGGTTGCGTCTG 2653
Query 2567 CAAGTCATGACAAATCCGTAAAGATTTGGAAGTAGAAATATTTATTTATATGTTCTTCT- 2625
||||||||||||||||||||||||||||||||||||||||||| | || |||| |||
Sbjct 2654 CAAGTCATGACAAATCCGTAAAGATTTGGAAGTAGAAATATTTCT--AT--GTTCGTCTG 2709
Query 2626 aaaa-a---g-aaaa--gaa-aaa-aG-AGAG--CTCAGGACtttttttGAGTCTAATTC 2673
|||| | | |||| ||| ||| || |||| |||||||||||||||| ||||||||
Sbjct 2710 AAAAGAAAAGGAAAAAAGAAGAAATAGCAGAGAGCTCAGGACTTTTTTTGGGTCTAATTT 2769
Query 2674 TTTGTTTAA----AATGTTTACATCAATAAGTTGGGtttttttttAA-T-GGGCTTGTTT 2727
||| ||| |||||| |||| |||||||||| ||||||||||| | ||| ||||||
Sbjct 2770 TTTTTTTTTTTTTAATGTT-ACATTAATAAGTTGGTTTTTTTTTTAAATTGGGTTTGTTT 2828
Query 2728 ATGTCAAAAGCAAAGGGACTTTGTGATAATTCCAATCTTTGTTCTA-TGATCCTACTTCT 2786
||||||||||||||| ||||| |||||| ||||||||||||| ||| |||||||||||||
Sbjct 2829 ATGTCAAAAGCAAAGAGACTT-GTGATATTTCCAATCTTTGT-CTAATGATCCTACTTCT 2886
Query 2787 TTCCTTTGTTGTTGTGGTCTCTAGTGTTTAGAGTGAAAGAGAGATGTGTTAAGTAATTTC 2846
|| ||| |||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2887 TTACTTCGTTGTTTTGATCTCTAGTGTTTAGAGTGAAAGAGAGATGT---AAGTAATTTC 2943
Query 2847 TCTAGAACAACTAAATTGTTGAATAAT 2873
|||||| |||||| |||||||||||||
Sbjct 2944 TCTAGACCAACTACATTGTTGAATAAT 2970
Score = 1533 bits (830), Expect = 0.0
Identities = 924/966 (96%), Gaps = 19/966 (2%)
Strand=Plus/Plus
Query 1 TCAATCTGAtctctctctctctTCCAGCTGTTTCATGATCGATTTACTC-TAAGTTACAG 59
|||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 24 TCAATCTGATCTATCTCTCTCTTCCAGCTGTTTCATGATCGATTTACTCTTAACTTACAG 83
Query 60 CTGAATACAATTCACTGTAATCTCTCAAGAACCCTAGATT-TCTCCCTT--TTTTCAATT 116
|||| ||||||||||||||||||||||||||||||||||| | | || |||||||||
Sbjct 84 CTGATTACAATTCACTGTAATCTCTCAAGAACCCTAGATTCTTTTTTTTCCTTTTCAATT 143
Query 117 GTGATCCGTCAGCAATGCTTGATCTTTAAAGATACTGGA-ATTTGAAGATCGAATTAGGG 175
|||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct 144 GTGATCCGTCAGCAATGCTTGATCTTTAAATTTACT-GATATCTGAAGATCGAATTAGGG 202
Query 176 TTCTGATCTACTTGTAATCACTTTGATTTGttt---tttttA-T-AGCAGCTCGATCTTG 230
|||||||||||||| || | ||| |||||||| ||||| | |||||||||||||||
Sbjct 203 TTCTGATCTACTTG--AT-A-TTT-ATTTGTTTGGGCTTTTATTCAGCAGCTCGATCTTG 257
Query 231 GGTTGAAGCTATGGCGCAGAGTAATTGGGAAGCTGACAAGATGCTTGATGTTTACATATA 290
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GGCTGAAGCTATGGCTCAGAGTAATTGGGAAGCTGACAAGATGCTTGATGTTTACATATA 317
Query 291 TGATTATTTGGTGAAGAAGAAACTTCATAATACTGCTAAGTCCTTTATGACTGAAGGGAA 350
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 318 TGATTATTTGGTGAAGAAGAAACTTCATAATACTGCTAAGTCGTTTATGACTGAAGGGAA 377
Query 351 GGTTTCTCCTGATCCTGTTGCAATTGATGCACCTGGAGGGTTTCTTTTTGAGTGGTGGTC 410
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GGTTTCTCCTGATCCAGTTGCAATTGATGCACCTGGAGGGTTTCTTTTTGAGTGGTGGTC 437
Query 411 TGTGTTTTGGGACATTTTCATTGCAAGGACGAATGAGAAGCATTCAGAGGCTGCTGCAGC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TGTGTTTTGGGACATTTTCATTGCAAGGACGAATGAGAAGCATTCAGAGGCTGCTGCAGC 497
Query 471 TTATATTGAGGCACAACAAGGTAAAGCCAAGGAGCAGCAAATGCAAATACAGCAACTGCA 530
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 498 TTATATAGAGGCACAACAAGGTAAAGCGAAGGAGCAGCAAATGCAAATACAGCAACTGCA 557
Query 531 GATGATGCGCCAAGCTCAAATGCAGCGTAGGGACCCTAATCATCCTTCTCTTGGTGGTCC 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 558 GATGATGCGCCAAGCTCAAATGCAGCGTAGGGACCCTAATCATCCTTCTCTTGGCGGTCC 617
Query 591 AATGAATGCTATTGGTGGTTCTGAAGGGATGATTGGCCAGTCTAATGCTAGTGCTTTGGC 650
|||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct 618 AATGAATGCTATTGGT--T-CTGAAGGGATGATTGGGCAGTCTAATGCTAGTGCTTTGGC 674
Query 651 TGCTAAAATGTACGAGGAACGTATGAAGCAGCCAAATCCTATGAATTCTGAGACATCCCA 710
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 675 TGCTAAAATGTACGAGGAACGCATGAAGCAGCCTAATCCTATGAATTCTGAGACATCCCA 734
Query 711 ACCTCATCTTGATGCAAGGATGGCCCTTCTTAAATCAGCAACAAACCATCATGGTCAGAT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ACCTCATCTTGATGCAAGGATGGCCCTTCTTAAATCAGCAACAAACCATCATGGTCAGAT 794
Query 771 TGTCCAGGGAAACCATCAAGGAGGTGTTTCGGCAGCGCTGCAGCAAATTCAATCACGAAC 830
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TGTCCAAGGAAACCATCAAGGAGGTGTTTCGGCAGCGCTGCAGCAAATTCAATCACGAAC 854
Query 831 TCAGCAGCCCACTGAAATCAAAACTGAAGTTAATATGGGTACATCTCCAAGACAACTGCC 890
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 855 TCAGCAGCCCACTGAAATCAAAACTGAAGTTAATTTGGGTACATCTCCAAGACAACTGCC 914
Query 891 AGTGGATCCTTCTACAGTTTATGGCCAGGGAATTCTGCAATCAAAGCCTGGGATGGGGAG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AGTGGATCCTTCTACAGTTTATGGCCAGGGAATTCTGCAATCAAAGCCTGGGATGGGGAG 974
Query 951 TGCAGG 956
||||||
Sbjct 975 TGCAGG 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142775119778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5