BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482229
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32870.1 | Symbols: | TRAF-like family protein | chr2:13944... 1995 0.0
AT2G32880.1 | Symbols: | TRAF-like family protein | chr2:13948... 1147 0.0
> AT2G32870.1 | Symbols: | TRAF-like family protein | chr2:13944611-13946790
REVERSE LENGTH=1622
Length=1622
Score = 1995 bits (1080), Expect = 0.0
Identities = 1260/1345 (94%), Gaps = 19/1345 (1%)
Strand=Plus/Plus
Query 195 AAAAAAGAACCATACTACGGTAAATTAGACGACCATCATCCTCATAATGGGTCTACCGTC 254
|||||| |||| | |||||||| ||| ||||||||| ||||||||||||||||||| |||
Sbjct 278 AAAAAAAAACCCTCCTACGGTATATTTGACGACCATTATCCTCATAATGGGTCTACTGTC 337
Query 255 ACTTGAAGACACCATAAAAGAGAAGCTAAAGGACCGCAAAAACGCTCACTTCATGTTGGT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 ACTTGAAGACACCATAAAAGAGAAGCTAAAGGACCGCAAAAACGCTCACTTCATGTTGGT 397
Query 315 TGATGGAATGTCTAAGCTACTGACTGAAAAAGTTAACAATTGTCAGTCAGTGGATTTCCA 374
||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 398 TGACGGAATGTCTAAGCTACTGACGGAAAAAGTTAAGAATTGTCAGTCATTGGATTTCCA 457
Query 375 AGTTTCTGGTATCAAATGGAGGTTGGTTATACGCTTATCTAGGGGAAGAAAAGACCATCT 434
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 AGTTTCTGGTGTCAAATGGAGGTTGGTTATACGCTTATCTAGGGGAAGAAAAGACCATCT 517
Query 435 ATCCTTTGTTCTCGAGATCACAGATGAAAAGTGTACCGGGTCTAATTGGGAAGTCAAATT 494
||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 518 ATCTTTTGTTCTGGAGATCACAGATGAAAAGTGTACCGGGTCTACTTGGGACGTCAAATT 577
Query 495 CAACTTCAAAATCGGCATAGTCCCTCAGACTGGACCTGATTATTGCTTCGTTTTGGTGGG 554
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 578 CAACTTCAAAATCGGCATAGTCCCTCAGACTGGACCAGATTATTGCTTCGTTTTGGTGGG 637
Query 555 GCATCAAAACGAAAAACAACGTATTCAAGGGCTAGCCAACTTTATATCACACACGGATTT 614
|||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||
Sbjct 638 GCATCAAAACGAAAAAAAACGTAGTCAAGGGTTAGCCAACTTCATATCACACACGGATTT 697
Query 615 GAAGGAGAGGTTTCTTGTGAACGACATAGCGGGTTTCTATGCCGAGATAAGCGATGTCCA 674
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 698 GAAGGAGAGGTTTCTTGTGAACGACAAAGCGGGGTTCTATGCCGAGATAAGCGATGTCCA 757
Query 675 ACCAAACTTCCCCGTTACTCGTATCCCTCGAACAATGGGCACAGCCGAACGCTTTAAACT 734
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 758 ACCAAACTTCCCCGTTACCCGTATCCCTCGAACAATGGGGACAGCAGAACGCTTTAAACT 817
Query 735 GATAGAGTTTTCTCCGAGGAACTCCAGATTCACCTGGAAGATCACGCAGTTTTCCTCCTT 794
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GATAGAGTTTTCTCCGAAAAACTCCAGATTCACCTGGAAGATCACGCAGTTTTCCTCCTT 877
Query 795 CGATGGTGAAGAGCATTCTTCTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CGATGGTGAAGAGCATTCTTCTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT 937
Query 855 AATGTACCCAAAAGGAAACGGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGTTTGC 914
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 938 AATGTACCCAAAAGGAAACGGAGATGGAAAAGGAAATTCGTTGTCTTTGTATTTGTTTGC 997
Query 915 ATCCGATTACGTCACAAATGGTCCTAAGGGTGGAACATTGGCCATCTACAAATTGAGAGT 974
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 998 ATCCGATTACGTCACCAATGGTCCTAAGGGTGGAACATTGGCCATCTATAAATTGAGAGT 1057
Query 975 GTTGGACCAACTCCATCGCAATCACTGTGAAACTGATTGCAGATATTGGTTTCCTTATAA 1034
||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1058 GTTGGACCAACTCAATCGCAATCACTGTGAAACTGAGTGTAGATATTGGTTTCCTTATAA 1117
Query 1035 TCCGGTTGATCCAATGGATTCCTTATGGGGACGTCACAAGTTTTTGCCGCTGGAGGAACT 1094
|| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1118 CCCTGTTAATCAAATGGATTCCTTATGGGGACGTCCCAAGTTTTTGCCGCTGGAGGAACT 1177
Query 1095 CCACAA-TGCGTCGAAAGGATTTCTAGTGAACGATCAGATATATATCGGTGTTGATATCT 1153
|||||| | | |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1178 CCACAAAT-CTTCGAGGGGATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGATCT 1236
Query 1154 CAATTGTATCCACTACTGAGTATCTCTGATGCGTTTTAACGAATTAGATCAAGACCACAA 1213
||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||| ||
Sbjct 1237 CAATTGTATCCACTACTGAGTATCTCTGATGCGCATTAATGGATTCGATCAAGACCAGAA 1296
Query 1214 AAATGAATAGCTCCTGCTGAACCTATCTACC--T-ATAT-T-CTACCATATTGTGATGTG 1268
|||||||||||| || |||||||||||||| | |||| | || |||||||||||||||
Sbjct 1297 GAATGAATAGCTCATGTTGAACCTATCTACCAGTTATATATTCTGCCATATTGTGATGTG 1356
Query 1269 TGTTTAGATATCAATGAATGATACAAACATGCA-GATTATACAAAAATAATAGAATAAGC 1327
||||||||||||| ||||||||||||||||||| | |||||||||| ||||| |||||||
Sbjct 1357 TGTTTAGATATCAGTGAATGATACAAACATGCATGTTTATACAAAA-TAATAAAATAAGC 1415
Query 1328 GACGGATCGAATCGGTTGATTGTATTGTATGGCACGATAACATTCAACCGAATCCGTTGC 1387
||||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||
Sbjct 1416 GACGGATCGAATCGGTTGATTGTATTGAATGTTACAATAACGTTCAACCGAATCCGTTGC 1475
Query 1388 TGCAAATTCTCTTATGGAGAATGA-TGCATGCTTGTCTATAAGTACTAGCTTTCTTTGTT 1446
||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||
Sbjct 1476 TGCAAATTCTCTTATGGAGAA-GAATGCATGCTTGTCTATAAGTACTACCTTTCTT-GTT 1533
Query 1447 TGTAATAACAACGATATATCTATAATCTATGTGTGTGTTAAATATTTTATTTTGACTCTT 1506
||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1534 TGTAATAACAACGATATATCTAT-------GTGTGTGTTAAATATTTTATTCCGACTCTT 1586
Query 1507 AAAAAATATAACTTATAAAAGAGAT 1531
|||||||||||| ||| ||||||||
Sbjct 1587 AAAAAATATAACATATGAAAGAGAT 1611
> AT2G32880.1 | Symbols: | TRAF-like family protein | chr2:13948750-13950556
REVERSE LENGTH=1211
Length=1211
Score = 1147 bits (621), Expect = 0.0
Identities = 935/1082 (86%), Gaps = 40/1082 (4%)
Strand=Plus/Plus
Query 196 AAAAAGAACCATACTACGGT-AAAT-TA-GACGACCATCATCCTCATAATGGGTCTACCG 252
||||| || | ||||||||| | | || |||||||||||| |||| |||||||||| ||
Sbjct 15 AAAAA-AATC-TACTACGGTGTATTATACGACGACCATCATGCTCAAAATGGGTCTAACG 72
Query 253 TCACTTGAAGACACCATAAAAGAGAAGCTAAAGGACCGCAAAAACGCTCACTTCATGTTG 312
||| |||||||| ||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 73 TCATTTGAAGACGCCATAAAAGAGCAGCTAAAGGAACGAAAAAACGCTCACTTCATGTTG 132
Query 313 GTTGATGGAATGTCTAAGCTACTGACTGAAAAAGTTAACAATTGTCAGTCAGTGGATTTC 372
|||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 133 GTTGATGGAATGTCGAAGCTACTGACTGAAAAAGTTAACAATTTTCAGTCATTGGATTTC 192
Query 373 CAAGTTTCTGGTATCAAATGGAGGTTGGTTATAC-GCTTATCTAG-GGGAAG-AAAAGAC 429
||||| |||||| |||||||||||||| |||||| | | || | ||| || ||||||
Sbjct 193 CAAGTATCTGGTCTCAAATGGAGGTTGCTTATACAAC-CAGCT-GTGGG-AGTAAAAGAT 249
Query 430 CATCTATCCT-TTG-T-TCTCGAGATCACAGATGAAAAGTGTACCGGGTCTAATTGGGAA 486
|||||| || ||| | | | | ||||| ||||||||||||||||||| |||||||||||
Sbjct 250 TATCTAT-CTGTTGCTGTAT-G-GATCATAGATGAAAAGTGTACCGGGCCTAATTGGGAA 306
Query 487 GTCAAATTCAACTTCAAAATCGGCATAGTCCCTCAGACTGGACCTGATTATTGCTTCGTT 546
|||||||||||||||||||||||| || ||||||||||||||||||| |||| || |||
Sbjct 307 GTCAAATTCAACTTCAAAATCGGCCTACTCCCTCAGACTGGACCTGAATATTTCTACGTC 366
Query 547 TTGGTGGGGCATCAAAACGAAAAACAACGTATTCAAGGGCTAGCCAACTTTATATCACAC 606
| ||||||| ||| ||||||||||||| | ||||||| ||| ||| || ||| |||||
Sbjct 367 TCGGTGGGGTGTCACAACGAAAAACAACCTGCTCAAGGGGTAGTCAAATTCATAACACAC 426
Query 607 ACGGATTTGAAGGAGAGGTTTCTTGTGAACGACATAGCGGGTTTCTATGCCGAGATAAGC 666
||| | || ||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 427 ACGCAGTTAAAGGAGAGGTTTCTTGTGAACGACAAAGCGGTTTTCTATGCCGAGATAAGC 486
Query 667 ---GATGTCCA-ACCAAACTTCCCCGTTACTCGTATCCCTCGAACAATGGGCACAGCCGA 722
|| || || ||||||||||| ||||||| ||||||||||||| ||||| ||||| ||
Sbjct 487 GAAGAAGT-CATACCAAACTTCCTCGTTACTGGTATCCCTCGAACCATGGGGACAGCAGA 545
Query 723 ACGCTTTAAACTGATAGAGTTTTCTCCGAGGAACTCCAGATTCACCTGGAAGATCACGCA 782
||||||||||||||||||| | ||| || || |||||||||||||||||||||||| |
Sbjct 546 ACGCTTTAAACTGATAGAGGTGGCTCGGAACAATTCCAGATTCACCTGGAAGATCACGAA 605
Query 783 GTTTTCCTCCTTCGATGGTGAAGAGCATTCTTCTTACGAGTTCACGGTTGGACCACGGAG 842
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 606 GTTTTCCTCCTTCAATGGTGAAGAGCATTCGTCTTACGAGTTCACGGTTGGACCACGGAG 665
Query 843 ATGGAAACTAGTAATGTACCCAAAAGGAAACGGAGATGGGAAAGGAAATTCGTTGTCTTT 902
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 666 ATGGAAACTAGTAATGTACCCAAGAGGAACCGGAGATGGGAAAGGAAACTCGTTGTCTTT 725
Query 903 GTATTTGTTTGCATCCGATTACGTCAC-AA-A-TGGTCCTAAGGGTG-GAACATTGGCCA 958
||||||| ||| || |||||||||| || | |||||| ||||| | ||||||| ||
Sbjct 726 GTATTTGAATGCGTCTAATTACGTCACCAATAATGGTCCAAAGGG-GAGAACATTCGCGG 784
Query 959 TCTACAAATTGAGAGTGTTGGACCAACTCCATCGCAATCACTGT-GAAACTGATTGC-AG 1016
|||| ||||||||||||||||||||||||||||||||||| | | |||| ||| ||| |
Sbjct 785 TCTATAAATTGAGAGTGTTGGACCAACTCCATCGCAATCATT-TCGAAATTGACTGCCA- 842
Query 1017 ATATTGGTTTCCTTATAATCCGGTTGATCCAATGGATTC--CTTATGGGGACGTCAC-AA 1073
| ||||||||| |||| |||||||| |||||| | ||| || |||||||||| || ||
Sbjct 843 AGATTGGTTTCTTTATGATCCGGTTCATCCAA-G-ATTATGCTCATGGGGACGT-ACCAA 899
Query 1074 GTTTTTGCCGCTGGAGGAACTCCACAATGCGTCGAAAGGATTTCTAGTGAACGATCAGAT 1133
||| ||||||||||||||||||||||| || || | |||||||| ||||| ||||||||
Sbjct 900 GTTCTTGCCGCTGGAGGAACTCCACAAAGCTTCTAGGGGATTTCTGGTGAATGATCAGAT 959
Query 1134 ATATATCGGTGTTGATAT-CTCAATTGTATCCACTACTGAGTATCTCTGATGCGTTTTAA 1192
||||||||||||||| || || |||||||||||||||||||||||||||||||| || |
Sbjct 960 ATATATCGGTGTTGA-ATTCTTAATTGTATCCACTACTGAGTATCTCTGATGCGCATTCA 1018
Query 1193 CGAATTAGATCAAGACCACAAAAATGAATAGCTCCTGCTGAACCTATCTACCTATA-TTC 1251
|| || ||||||||||||| ||| ||||||||| | ||||||||||||||||| |||
Sbjct 1019 CGGGTTTGATCAAGACCACACCAATAAATAGCTCCCGTTGAACCTATCTACCTATTGTTC 1078
Query 1252 TA 1253
||
Sbjct 1079 TA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75551820225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5