BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482238
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32960.1 | Symbols: | Phosphotyrosine protein phosphatases ... 1317 0.0
AT1G05000.2 | Symbols: | Phosphotyrosine protein phosphatases ... 518 5e-146
> AT2G32960.1 | Symbols: | Phosphotyrosine protein phosphatases
superfamily protein | chr2:13987767-13990976 FORWARD LENGTH=1239
Length=1239
Score = 1317 bits (713), Expect = 0.0
Identities = 899/982 (92%), Gaps = 39/982 (4%)
Strand=Plus/Plus
Query 1 TCTAAAAGTCCAACAGCGACAACATAAGTTTCTCTCTCTACAATGGCGTGTCTATATAAA 60
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 14 TCTAAAAGTCCAACAGCGACAACATAGGTTTCTCTCTCTACCATGGCGTGTCTATATAAA 73
Query 61 GCAAGGTCGTCGATTCATAACGACCATCTCCATTACTTCTCCATAACCTATCAAGAAACA 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 74 GCAAGGTCGTCGATTCATAACGACCATCTCCATTACTTCTCCATAACCTTTCAAGAAACA 133
Query 121 AAAAC-----AAGA-----TAAGA-T-CT---CT--------TCT--GATTC-TTAGATT 154
||||| |||| | ||| | || || | | | ||| |||||||
Sbjct 134 AAAACAAGATAAGATCTCTTCAGATTCCTACACTCCAACAAATATAAGTTTCATTAGATT 193
Query 155 CTTTCTTAGCTCA-AGAATGAAACTGATTGAGAAGACGATGAACATG-A-C--TAT-GG- 207
||||||||||| | |||||||||||||||||||||||||||| |||| | | | | ||
Sbjct 194 CTTTCTTAGCT-AGAGAATGAAACTGATTGAGAAGACGATGAGCATGAACCAGTTTAGGA 252
Query 208 --A-GGAGGAGGAGAAGCAAGACGGTGGTGAGGTTTTCCATACCATCGAGGTTGCTAAAG 264
| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 253 CTATGGAGGAGGAGAAGCAAGACGGTGGTGAGCTTTTCCATACCATCGAGGTAGCTAAAG 312
Query 265 TTGACCGGAACTACGTGTCTCCGCCGGCGGCGGCTACTGCTGCACCACTGCTAGAAGTTT 324
||||||||||| ||||||||| |||| || ||||| || ||||| ||||||||||||||
Sbjct 313 TTGACCGGAACAACGTGTCTCAGCCGCCGCCGGCTGCTACTGCAGCACTGCTAGAAGTTC 372
Query 325 CCGGCGACGAACTTAACCTGATTCCACCGTTGAACTTTGCGATTGTTGATAATGGTATAT 384
|||| || ||||||||||| |||||||||||||||||| |||| || |||||||||||||
Sbjct 373 CCGGTGATGAACTTAACCTAATTCCACCGTTGAACTTTTCGATGGTCGATAATGGTATAT 432
Query 385 TCCGGTCTGGATTCCCGGACTTAGCGAACTTCTCCTTCATCAAGACTCTTGGCCTTCGCT 444
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 433 TCCGGTCTGGATTCCCGGACTCGGCGAACTTCTCCTTCATCAAGACTCTTGGCCTTCGCT 492
Query 445 CAATCATATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCA 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CAATCATATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCA 552
Query 505 ATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCCAAGTCCAAGTGTCTCCCCGGGT 564
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 553 ATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCTAAGTCCAAGTGTCTTCCCGGAT 612
Query 565 TAGAGAACGAGGTTTGGTTGCATATTTGGAGTTCTAAGCATCAGAAAGAGGGTTCCTATA 624
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 613 TAGAGAACGAGGTTTGGTTGCATATTTGGAGTTCTAAGCATCAGAAAGAGGATTTTTATA 672
Query 625 CAAATGGAAATTCGAAAACTTCGGAGCCATTAGTAGATATCCTAGATCATAAAATCCGTG 684
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 673 CAAATGGAAATTCAAAAACTTCGGAGCCATTTGTAGATATCCTAGATCAGAAAATCCGTG 732
Query 685 AAGCACTCAAAGTCCTTCTCGATGAGAAGAACCATCCACTTTTGATTCATTGCAAACGAG 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AAGCACTCAAAGTCCTTCTCGATGAGAAGAACCATCCACTTTTGATTCATTGCAAACGAG 792
Query 745 GCAAGCACAGGACCGGGTGTCTTGTTGGGTGCATGAGGAAACTCCAGAAATGGTGCATAA 804
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GCAAGCACAGAACCGGGTGTCTTGTTGGGTGCATGAGGAAACTCCAGAAATGGTGCATAA 852
Query 805 CATCGATATTCGACGAGTACCAA-CGATTTGCAGCGGCTAAAGCTAGAGTTTCGGACCAA 863
|||||||| |||| ||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 853 CATCGATACTCGATGAGTAT-AAGCGATTTGCAGCGGCTAAAGCTAGAGTTTCGGATCAA 911
Query 864 AGGTTCATGGAGTCATTCGATGTATCAGGCTTGAAGCACATTCCAATGTCTTTCTCTTGC 923
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 912 AGGTTCTTGGAGTCATTCGATGTATCAGGCTTGAAGCACACTCCAATGTCTTTTTCTTGC 971
Query 924 TCCAATAGGTAAAATGAAAACG 945
||||||||||||||| ||||||
Sbjct 972 TCCAATAGGTAAAATAAAAACG 993
> AT1G05000.2 | Symbols: | Phosphotyrosine protein phosphatases
superfamily protein | chr1:1425601-1428782 FORWARD LENGTH=1192
Length=1192
Score = 518 bits (280), Expect = 5e-146
Identities = 518/628 (82%), Gaps = 36/628 (6%)
Strand=Plus/Plus
Query 324 TCCGGCGACGAACTTAACCTGATTCCACCGTTGAACTT-TGCGATTGTTGATAATGGTAT 382
|||||||| |||||| |||| ||||| ||| | ||||| | | || || ||||| |||||
Sbjct 198 TCCGGCGAAGAACTTCACCTAATTCCGCCGCTCAACTTCT-CCATGGTCGATAACGGTAT 256
Query 383 ATTCCGGTCTGGATTCCCGGACTT-AGCGAACTTCTCC-TTCATCAAGACTCTTGGCCTT 440
|||||||||||||||||| || || ||| ||||||||| ||| || ||||||| || ||
Sbjct 257 ATTCCGGTCTGGATTCCCTGA-TTCAGCTAACTTCTCCTTTC-TCCAGACTCTCGGTCTC 314
Query 441 CGCTCAATCATAT-CTTTGTGTCCAGAGCCATATCCTGAGAACAA-CATGCAGTTCCTCA 498
||||||||||||| | ||||| || ||||| || || |||| ||| | | |||||||| |
Sbjct 315 CGCTCAATCATATAC-TTGTGCCCGGAGCCCTACCCAGAGAGCAATC-TCCAGTTCCTTA 372
Query 499 AATCCAATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCCAAGTCCAAGTGTCTCC 558
||||||||||||| || ||||| |||||||| |||||||| ||| ||||||| | |
Sbjct 373 AATCCAATGGAATCAGGCTTTTCCAGTTTGGTATTGAAGG---CAA---CAAGTGTGTTC 426
Query 559 CCGGGTTAGAGAACGAGGTTTGGTTGCATATT-TGGAGTTCTAAGCATCAGAAAGAGGGT 617
| | ||||| |||||| ||| |||||| || |||| |||||||||||||||| |||||
Sbjct 427 CTGACTTAGACAACGAGATTTCCTTGCAT-TTATGGAATTCTAAGCATCAGAAACAGGGT 485
Query 618 TCC-TATACAAATGGAAATTCGAAAACTTCGGAGCCATTAGTAG-ATA-TCCTAGATCAT 674
|| || || |||||| ||||||||||| ||||||||| || | ||| ||| ||| |||
Sbjct 486 CCCTTA-ACTAATGGACTTTCGAAAACTTTGGAGCCATTTGT-GAATATTCC-AGACCAT 542
Query 675 AAAATCCGTGA-AGCACTCAAAGTCCTTCTCGATGAGAAGAACCATCCACTTTTGATTCA 733
|||||||| | ||||| ||||| ||||| |||||||| |||||||| || |||||||
Sbjct 543 AAAATCCG-CATGGCACTGAAAGTGCTTCTAGATGAGAAAAACCATCCTGTTCTGATTCA 601
Query 734 TTGCAAACGAGGCAAGCA-CAGGACCGGGTGTCTTGTTGGGTGCATGAGGAAACTCCAGA 792
||| || ||||||||||| | ||||||| ||||||||||| ||| ||||||| |||||||
Sbjct 602 TTGTAAGCGAGGCAAGCATC-GGACCGGTTGTCTTGTTGGTTGCTTGAGGAAGCTCCAGA 660
Query 793 AATGGTGCATAACATCGATATTCGACGAGTACCAACGATTTGCAGCGGCTAAAGCTAGAG 852
||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 661 AATGGTGTTTGACATCGATATTCGACGAGTACCAACGATTTGCAGCAGCGAAAGCTAGAG 720
Query 853 TTTCGGACCAAAGGTTCATGGAG-TCATTCGATGTATC-AGGCTTGAAG-CACATTCCAA 909
|||| || ||||| ||||||||| | ||||||||| || || ||| | | || |||||||
Sbjct 721 TTTCAGATCAAAGATTCATGGAGAT-ATTCGATGTTTCCAG-CTTCA-GTCATATTCCAA 777
Query 910 TGTCTTTCTCTTGCTCCAAT-AGGTAAA 936
|||| |||||||| |||| | |||||||
Sbjct 778 TGTCATTCTCTTGTTCCA-TCAGGTAAA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5