BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482239
Length=2376
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32970.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3576 0.0
> AT2G32970.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages. | chr2:13991448-13995749
REVERSE LENGTH=2575
Length=2575
Score = 3576 bits (1936), Expect = 0.0
Identities = 2222/2357 (94%), Gaps = 32/2357 (1%)
Strand=Plus/Plus
Query 1 TGAAGATTAAAAACCGACGAGACCCTGGCGCCAT---AAC-A-ACAATCTCCATT-CTCC 54
|||||||||||||||||||||||||||||||||| ||| | |||||| |||| ||||
Sbjct 13 TGAAGATTAAAAACCGACGAGACCCTGGCGCCATCACAACTACGCAATCT-CATTCCTCC 71
Query 55 GTCTTCCTCGGCTTCCAAATTTACCATTTTACCCTTCTCTTTCCCTGAGACTTCTTTTTT 114
|||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 72 GTCTTCTTCGGCTTTCAAATTTACCATTTTACCCTTCTCTTTCCCTGAGACGTCTTCTTT 131
Query 115 GGAAATATTCTTCTCTTCTTCTTCCATTCCAATGATTTTGAGTTTAATTGGAAATTAGAG 174
|||||||||| | || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 132 GGAAATATTC-T-TC-TCTTCTTCCATTCCAATGATTTTGAGGTTAATTGGAAATTAGAG 188
Query 175 TGCAATATTGGGATTTAGATGGGGATTGGTGATGAATCTAAATGTGTTTTCCCCTTAACG 234
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 189 TGCAAAATTGGGATTTAGATGGGGATTGCTGATGAATCTAAATGTGTTTTCCCCTTGACG 248
Query 235 AGTCTCCAGATCGGAGACTTGCAATCGTATCTTTCTGATCTCAGTATTTTCCTGGGAAAT 294
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 249 AGTCTCCAGATCGGAGACTTGCAATCATATCTTTCTGATCTCAGTATTTTCCTGGGAAAT 308
Query 295 AAAAGTAAAAAGATTTACATATTGGTGGACAACCGGCCATGGTTGAATCCTGGAACCAAA 354
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 309 AAAAGTAAAAAGATTTACATATTGGTGGATAACCGGCCATGGTTGAATCCTGGCACCAGA 368
Query 355 TCTGCTCATTTCTGGCAACTAATGGTTAC-AA----AGACTCTCTCCTTTCGCAAACACG 409
||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||
Sbjct 369 TCTGCTCATTTTTGGCAACTAATGGTCACAAAGTCCAGACTCTCCCCTTTTGCAAACACG 428
Query 410 AAAGTTCGAggggagaagaaaaatcagaagcaggagggggagaagaaaaagtcgaagccg 469
||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 429 AAACTTCGAGGGGAGAAGAAAAATCAGAATCAGGACAGGGAGAAGAAAAAGTCGAAGCAG 488
Query 470 aaggagg-agaaaaagCCTAAAGAGGCGTGTTCTCAGCCCCAGCCAGACAATATAAAAAT 528
|||||| || | |||||||||||||| ||||||||||||||||| ||| ||| ||||||
Sbjct 489 GAGGAGGAAG-AGAAGCCTAAAGAGGCTTGTTCTCAGCCCCAGCCGGACGATAAAAAAAT 547
Query 529 GAAAAAGCTTAAGAAATGGTTCTCAGTGATAGATGCGACAACATTTTCTAAGAAGAAATT 588
||| ||||||||| | ||||||||| |||||||||||||||| ||||| || ||||||||
Sbjct 548 GAAGAAGCTTAAGCAGTGGTTCTCATTGATAGATGCGACAACTTTTTCGAATAAGAAATT 607
Query 589 ACCTGCAAAGAAACTGCAAAGCTCTTTGTATCT-AAACAAGCAACTGCACAAGACCTTGT 647
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 608 ACCTGCAAAGAAACTGCAGAGCTCTTTGTATCTGAAA-AAGCAACTGCACAAGACCTTGT 666
Query 648 ATGGTTTCATCGTGTTTGAAATTGAATGGGTTAATGTGAGGGGTATCAACTACTTAAATG 707
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 667 ATGGTTTCATCGTGTTTGAGATTGAATGGGCTAATGTGAGGGGTATCAACTACTTAAATG 726
Query 708 AGCTACAGACAGACACATCTCTTGCTATAGAAGCTAAGTTGATGCGAAGGTGGGAGTTTG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 AGCTACAGACAGACACATCTCTTGCTATAGAAGCTAAGTTGATGCGAAGGTGGGAGTTTG 786
Query 768 AGAGTATTGATCAAGCTGT-AAATAGCATGTCTCAGTGGTTCTCTGGATCAGAAGCTGAA 826
||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 787 AGAGTATCGATCAAGCTGTGAAA-AGCATGTCTCAGTGGTTCTCTGGATCAAAAGCTGAA 845
Query 827 AAGTCTTACTTGAGGGAATATCTCGACTCAACTATAGGAGAGGTTTTTCATGACGCTGAA 886
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 846 AAGTCTTGCTTGAGGGAATATCTCGACTCAACTATAGGAGAGGTTTTTCATGACACTGAA 905
Query 887 ATGGAATTCTCAAAAACTCCTCCCTTTGATGATGATGACAATCGTTCTGTTGAAAATGAC 946
|||||||||||||||||| ||| || |||||| |||||||||| |||||||||||||||
Sbjct 906 ATGGAATTCTCAAAAACTACTCTCTCTGATGACGATGACAATCTTTCTGTTGAAAATGAT 965
Query 947 TCTCCTTGCTGCGCCAGAAGTGTCTTCAACGTTAATCATGCTGCTGTAGATTATGATGAA 1006
|||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 966 TCTCCTTGCTGCTCCAGAAGTGTCTTCAACGTTAATCATTCTGCTGCAAATTATGATGAA 1025
Query 1007 AACGAGCCTCACACACCGCCTCTGACTGGACCATACAAGAGAAGAAGAGTAACTAAGGCA 1066
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1026 AACGAGCCTCACACACCGCCTCTGACTGGACCGTACAAGAGAAGAAGAGTAACTAAGGCA 1085
Query 1067 ATCAGCACTGGAGTTGAAGTTGACTATATGGAGGAAACACCCAAAAGAAAAGATAACTCG 1126
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1086 ATCAGCACCGGAGTTGAAGTTGACTATATGGAGGAAACACCCAGAAGAAAAGATAACTCG 1145
Query 1127 GTAGACCACTGGGAAAGCCATGTACCTGATTGTGAGAACATCACTGAAGCAACCCAGTAT 1186
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1146 GTAGACCACTGGGAAAGCCATGTACCTGATTGTGACAACATCATTGAAGCAACCCAGTAT 1205
Query 1187 AAGGATGTACTAGTTCTTGTTAAGTGTGGTGACCGTGATCTTCCTTTTAAATTGCGAGAG 1246
|||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||
Sbjct 1206 AAGGATGTACTAGTTCTTGTTAGGTGTGGTGACCGTGATCTCCCTTTCAAGTTGCGAGAG 1265
Query 1247 GTTATAATGGCTGACATACGCTTGCTTACTTTACTTGAAGCTGGTCTCCCGTCCTGGGTC 1306
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1266 GTTATAATGGCTGACATACGATTGCTTACTTTACTTGAAGCTGGTCTCCCTTCATGGGTC 1325
Query 1307 TTGTTTCTGCAGTCTTATCCCGGTTTCTGTCATCTTTATCGACCCTGGATGTGCCTTTTC 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1326 TTGTTTCTGCAGTCTTATCCCGGTTTCTGTCATCTTTATCGACCCTGGATGTGCCATTTC 1385
Query 1367 GCCAGAGCATTATATGTGATGGTATCTGTCATCACTGTTGTGATTGGTTTTTATGACCTG 1426
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GCCAGAGCATTATATGTGATGATATCTGTCATCACTGTTGTGATTGGTTTTTATGACCTG 1445
Query 1427 TACAAAAATGTCCCCGTTCTGAAGGCTACTGCAGCTCGGTTATGTGGGCCACTCTTTGAT 1486
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 1446 TACAAAAATGTCCCTGTTCTGAAGGCTACTGCATCTCGGTTATGTGGGCCACTGTTCGAT 1505
Query 1487 TGGGTTGAAACATGGGACATGGTATCACGGATAAAGTACTTGGGAACGATGTTGTTTCTT 1546
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1506 TGGGTTGAAACATGGGACATGGTATCCCGAATAAAGTACTTGGGAACGATGTTGTTTCTT 1565
Query 1547 CACAACTTCCAGAAAGCTGTCAAATGGGCTCTGACTATGGCACGTGCTATGCAGTCATTT 1606
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1566 CACAACTTCCAGAAAGCTGTCAAGTGGGCTCTGACTATGGCACGTGCTATGCAGTCATTT 1625
Query 1607 GTTTCTTTTTGCATAATGCCTCTGGTAAATCCTCTCTTAGA-AGTTCTTGGTTTGCTCCT 1665
||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1626 GTTTCTTTTTGCATAATGCCTCTGGTAAATCCTCTCTTAGACA-TTCTTGAATTGCTCCT 1684
Query 1666 ACCGTTATGGAATTCGTTGGCGGAAACAGTGGCGAGCTTGGTTTCAGTGGTTTGGATAGT 1725
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1685 ACCGTTATGGAATTCGTTGGCGGAAACAGTGGCAAGCTTGGTTTCAGTGGTTTGGATAGT 1744
Query 1726 GATTGAGTCTGGTTGCAATCTCGTTGGTGATGTGGTAGAGTTGGTGCTTTTGCCCATCTC 1785
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1745 GATGGAGTCTGGTTGCAATCTTGTTGGTGATGTGGTAGAGTTGGTGCTTTTGCCCATCTC 1804
Query 1786 ACTAGTTTGGAACCTCACAAATACTGTTTTACTGCCTCTTTTCTGGATCATATGGGAAGT 1845
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1805 GCTAGTTTGGAACGTCACAAATACTGTTTTACTACCTCTATTCTGGATCATATGGGAAGT 1864
Query 1846 GGTATATGCGCCGATCAGAGTGGTTGCTGCATTGGCCAACTGTTTAGCTGTTTCCTTCTC 1905
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1865 GGTATATGCACCGATCAGAGTGGTTGCTGCATTGGCCAATTGTTTAGCTGTTTCCTTCTC 1924
Query 1906 ATACATATTCGATCTTATTGGAGATTTATGGAGGTATATGAGCAGTATACTTCAGCTTGC 1965
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ATACATATTCGATGTTATTGGAGATTTATGGAGGTATATGAGCAGTATACTTCAGCTTGC 1984
Query 1966 ATCAGATTCTCAAGCAGCTGTGAAGACTTATGAAGTCTCCATGTGGCGTACTCTTTGGAA 2025
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1985 ATCAGATTCTCAAGCAGCTGTGAAGACTTATGAAGTCTCCATGTGGCGTACACTTTGGAA 2044
Query 2026 CGACCTCTTTTCTCATGTTTTTCGTGCTGTCAGGAGTATATTGAACGGTTTTGTGGCCTT 2085
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 2045 CGATCTCTTTTCTCATGTTTTTCGTGCTGTCAGGAGCATATTGAACGGTTTTGTAGCATT 2104
Query 2086 CTTTGCTGCCTGTAACAGACATCGGCTTAGTACATATAATCACATACAAGAGTTTATCCA 2145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2105 TTTTGCTGCCTGTAACAGACATCGGCTTAGTACATATAATCACATACAAGAGTTTATGGA 2164
Query 2146 GAGAGTACATGGACGAACCACGAGATCAGAATCTATAGACTCAAGAGATGGCATGTCTGC 2205
||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 2165 GAGAGTACATGGACGAACCACGAGACCAGAATCTATAGACTCAAGACATGGCAAGTCTGT 2224
Query 2206 TAAAAACAATCAACGTACAGGAGACGAAACGAGAAGGAAATTGCACCTTGCATAGAAGTC 2265
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 TAAGAACAATCAACGTACAGGAGACGAAACGAGAAGGAAATTGCACCTTGCATAGAAGTC 2284
Query 2266 AACACGAAAATCTTAA-TTCTTTTGATTTGTTTT-CTTACCAGAGTATATGATAGGTTAG 2323
|| | | ||||| ||||||||||| |||| ||| |||||| ||||||||||||||
Sbjct 2285 AA-A--A----CTTAAATTCTTTTGATTACTTTTTCTTGCCAGAGAATATGATAGGTTAG 2337
Query 2324 GGTATAGATAGATAGGT 2340
||||||||||||||||
Sbjct 2338 TGTATAGATAGATAGGT 2354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117971280750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5