BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482258
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33220.1 | Symbols: | GRIM-19 protein | chr2:14078851-14080... 1103 0.0
AT1G04630.1 | Symbols: MEE4 | GRIM-19 protein | chr1:1289734-12... 531 5e-150
> AT2G33220.1 | Symbols: | GRIM-19 protein | chr2:14078851-14080157
FORWARD LENGTH=783
Length=783
Score = 1103 bits (597), Expect = 0.0
Identities = 634/652 (97%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 21 TCATTTCTGATTGTCTTCCTCAGAATCCCTAGAACACACACTGATTAACGAACCAAAGAT 80
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 37 TCATTTCTGATTGTCTTTCTCAGAATCCCTAGAACACACACTGATTAACGAATCAAAGAT 96
Query 81 CGATTTGGGGATCAATCGAGGAAGAAAATGACGGAGGCGATGATAAGGAAGAAGCCAGGA 140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 97 CGATTTGGGGATCAATCGAGGAAGAAGATGACGGAGGCGATGATAAGGAAGAAGCCAGGA 156
Query 141 ATGGCGAGTGTGAAGGATATGCCGTTGCTTCAGGATGGTCCACCACCGGGTGGATTCGCG 200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 157 ATGGCGAGTGTGAAGGATATGCCGTTGCTTCAGGATGGTCCACCACCTGGTGGATTCGCG 216
Query 201 CCGGTCCGATATGCTCGTCGGATCTCCAACACGGGTCCAAGCGCCATGGCTATTTTCCTT 260
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 217 CCGGTCCGATATGCTCGCCGGATCTCCAACACGGGACCTAGCGCCATGGCTATTTTCCTT 276
Query 261 ACCGTTTCCGGTGCTTTTGCTTGGGGCATGTACCAAGTCGGTCAGGGCAACAAAATCCGC 320
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 277 ACCGTTTCCGGTGCTTTTGCTTGGGGCATGTACCAAGTTGGTCAGGGCAACAAAATCCGC 336
Query 321 AGGGCGTTGAAGGAAGAGAAATACGCTGCCCGTAGAGCAATTCTACCGATTCTTCAAGCT 380
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 337 AGGGCGTTGAAGGAAGAGAAGTACGCTGCACGTAGAGCAATTCTACCGATTCTTCAAGCT 396
Query 381 GAAGAAGATGAAAGGTTTGTGTCTGAGTGGAACAAGTATCTAGAATACGAGGCGGATGTG 440
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 397 GAAGAAGATGAAAGGTTTGTGTCTGAGTGGAAGAAGTATCTAGAATACGAGGCGGATGTG 456
Query 441 ATGAAGGATGTTCCTGGATGGAAAGTCGGTGAAAACGTATACAATTCTGGTCGTTGGATG 500
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 457 ATGAAGGATGTTCCTGGATGGAAAGTCGGTGAAAACGTGTACAATTCTGGTCGTTGGATG 516
Query 501 CCTCCAGCTACTGGAGAGCTTCGTCCTGATGTCTGGTAAAATATCAATGGCTCCTTTTGA 560
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 517 CCTCCAGCTACCGGAGAGCTTCGTCCTGATGTCTGGTAAAATTTCAATGGCTCCTTTTGA 576
Query 561 TGATGATGAATGAATGTTTGTTTAAGCATTTTAGAACCTTGATGTTTGTTATCTCT-T-T 618
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 577 TGATGATGAATGAATGTTTGTTTAAGCATTTTAGAACCTTGATGTTTGTTGTCTCTATAT 636
Query 619 TTCCATCGTATAATAAGAGAAATGATACATACACAGTTCATGTATTGGTGGT 670
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 637 TTCCATCGTATAATAAGAGAAATGATACATACACAGTTCATGTATTGCTGGT 688
Score = 108 bits (58), Expect = 9e-23
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 670 TTTTTACCTCATTCACATATTTCTGTCAATGACAG-AATCAGTTTCAGACACATGTTCAT 728
||||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 714 TTTTTCCCTCATTCACTTATTTCTGTCAATGAC-GAAATCAGTTTCAGACACATGTTCAT 772
Query 729 ATATTTTGTTT 739
|||||||||||
Sbjct 773 ATATTTTGTTT 783
> AT1G04630.1 | Symbols: MEE4 | GRIM-19 protein | chr1:1289734-1291112
REVERSE LENGTH=745
Length=745
Score = 531 bits (287), Expect = 5e-150
Identities = 385/434 (89%), Gaps = 0/434 (0%)
Strand=Plus/Plus
Query 104 GAAAATGACGGAGGCGATGATAAGGAAGAAGCCAGGAATGGCGAGTGTGAAGGATATGCC 163
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 123 GAAGATGACGGAGGCGATGATAAGAAATAAGCCAGGAATGGCGAGTGTGAAGGATATGCC 182
Query 164 GTTGCTTCAGGATGGTCCACCACCGGGTGGATTCGCGCCGGTCCGATATGCTCGTCGGAT 223
| |||||||||||||||| ||||||||||| ||||| |||||||||||||| || |||||
Sbjct 183 GCTGCTTCAGGATGGTCCGCCACCGGGTGGGTTCGCACCGGTCCGATATGCCCGCCGGAT 242
Query 224 CTCCAACACGGGTCCAAGCGCCATGGCTATTTTCCTTACCGTTTCCGGTGCTTTTGCTTG 283
||||| |||||||| || || ||||| || |||||| ||||||| ||||| ||||||||
Sbjct 243 ATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTG 302
Query 284 GGGCATGTACCAAGTCGGTCAGGGCAACAAAATCCGCAGGGCGTTGAAGGAAGAGAAATA 343
||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 303 GGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATA 362
Query 344 CGCTGCCCGTAGAGCAATTCTACCGATTCTTCAAGCTGAAGAAGATGAAAGGTTTGTGTC 403
||||| |||||| |||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 363 TGCTGCTCGTAGAACAATACTTCCCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTC 422
Query 404 TGAGTGGAACAAGTATCTAGAATACGAGGCGGATGTGATGAAGGATGTTCCTGGATGGAA 463
||||||||| |||||||| ||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct 423 TGAGTGGAAAAAGTATCTGGAATATGAGGCTGATGTAATGAAAGATGTTCCGGGATGGAA 482
Query 464 AGTCGGTGAAAACGTATACAATTCTGGTCGTTGGATGCCTCCAGCTACTGGAGAGCTTCG 523
||| || || || || |||||||||||||| ||||||||||| |||||||| || || ||
Sbjct 483 AGTTGGCGAGAATGTGTACAATTCTGGTCGCTGGATGCCTCCGGCTACTGGGGAACTCCG 542
Query 524 TCCTGATGTCTGGT 537
||||||||| ||||
Sbjct 543 TCCTGATGTGTGGT 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5