BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482332 Length=1136 Score E Sequences producing significant alignments: (Bits) Value AT2G33800.1 | Symbols: | Ribosomal protein S5 family protein |... 1779 0.0 > AT2G33800.1 | Symbols: | Ribosomal protein S5 family protein | chr2:14300772-14302430 REVERSE LENGTH=1143 Length=1143 Score = 1779 bits (963), Expect = 0.0 Identities = 1084/1141 (95%), Gaps = 13/1141 (1%) Strand=Plus/Plus Query 1 TCTGGTGCTGGATAAGCCTTTTGCTTCGTTCTCACTTCCTTCCTCATCC-AAAAAG--CC 57 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || Sbjct 10 TCTGGTGCTGGATAAGCCTTTTGCTTCATTCTCACTTCCTTCCTCATCCAAAAAAGCTCC 69 Query 58 TCCATTTTCAATGGCGACAGCATCAGctctctcttcactctcttctctctcactccacac 117 |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 70 TCCA-TTTCAATGGCGACAGCATCAGCTCTCTCATCACTCTCTTCACTCTCACTCCACAC 128 Query 118 ccgaaccacctcttctctcatctcctcctcctccacaaaacccatcgtctccttctcctc 177 ||| | |||||||||||||||||||| |||||||||||| |||||||||| |||||||| Sbjct 129 CCG-A--ACCTCTTCTCTCATCTCCTCTTCCTCCACAAAATCCATCGTCTCTTTCTCCTC 185 Query 178 cttcctcAACCGCCGCGTCTCATCTCTCACTCTCGTCAAAGCCTCATCGAACGAAACCGA 237 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 186 CTTCCTCAACCGCCGCTTCTCATCTCTCACTCTCGTCAAAGCCTCATCGACCGATACCGA 245 Query 238 AACTTTCTTCTTCGAAGACGAAACCCCAGAAATAACCGCCAATGTCGTCTTCGACCCACC 297 ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 246 AACCATCTTCTTCGAAGACGAAACACCAGAAATAACCGCAAATGTCGTCTTCGACCCACC 305 Query 298 AGTTGCTCCCGAAGGATTCGTCGCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGA 357 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 306 AATTGCTCCCGAAGGATTCGTCTCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGA 365 Query 358 GGAAGAGATCGCGACGGCTTTTGAAGAGCTCTATGGTCCTGCGTATAGTGGTGAGAGTAT 417 |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 366 GGAAGAGATCGCTACCGCTTTTGAAGAGCTCTATGGACCTGCGTATAGTGGTGAGAGTAT 425 Query 418 GCTTGGGAAAGACATTTATGTGATGGATTCGAAGCATAAGAAGAGTTCAGGTATTGGTGG 477 |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 426 GCTTGGGAAAGATATTTATGTGATGGACTCAAAGCATAAGAAGAGTTCAGGTATTGGTGG 485 Query 478 GAAGCTGAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAG 537 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 GAAGCCAAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAG 545 Query 538 AGTGACTAAGGTTGTTAAAGGTGGGAAGCAATTGAAGTTTAGAGCTATTGTTGTTGTTGG 597 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 546 AGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAAGTTTAGAGCTATCGTTGTTGTTGG 605 Query 598 TGATAAGCAGGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGT 657 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 606 TGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGT 665 Query 658 TCAGAAATCTGCCATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTACTC 717 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 666 TCAGAAATCTGCTATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTATTC 725 Query 718 TACTTTCCCCCACAGATCGGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCGGC 777 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 726 TACTTTCCCTCACAGATCAGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCTGC 785 Query 778 TTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTCAGGATCGTGCTAGAGATGGCAGG 837 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 786 TTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTTAGGATTGTGCTAGAGATGGCAGG 845 Query 838 AGTCGAGAATGCATTGGGGAAACAGCTCGGAAGCAACAATGCTCTCAACAATGCGAGAGC 897 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 846 AGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAACAATGCTCTCAACAATGCGAGAGC 905 Query 898 CACTCTTGCGGCAGTGCAACAGATGAGACAGTTCCGCGATGTTGCTCAAGAGCGTGGAAT 957 ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 906 CACTCTTGCAGCAGTACAACAGATGAGACAGTTCCGCGATGTTGCACAAGAGCGTGGAAT 965 Query 958 CCCCATGGAAGAACTCTGGAAGTGAAAACTCATCTTCGCTTTAACATTTTCATCCTCTTT 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 966 CCCCATGGAAGAACTCTGGAAGTGAAAACTCATCTTCGCTTTAACATTTTCATCCTCTTT 1025 Query 1018 TGTTGAGATT-CTTGTAAAATTATGTAATTCATGAGAAAAATATGTTTATTTTGAAATAG 1076 |||||||||| ||||||| | |||||||||||||||||| ||||||||||||||||||| Sbjct 1026 TGTTGAGATTTCTTGTAA--TGATGTAATTCATGAGAAAA-TATGTTTATTTTGAAATAG 1082 Query 1077 CAAATCCTTTCTTCTTCCACAAAAGTTC-CAATTGACCAATTCTATTACAGAATGCTATA 1135 |||||||||||||| ||| |||||||| || |||||| |||||||| |||||||||||| Sbjct 1083 TAAATCCTTTCTTCTCCCATAAAAGTTCACA-TTGACCGATTCTATTTCAGAATGCTATA 1141 Query 1136 G 1136 | Sbjct 1142 G 1142 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55722604950 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5