BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482334 Length=959 Score E Sequences producing significant alignments: (Bits) Value AT2G33810.1 | Symbols: SPL3 | squamosa promoter binding protein... 1369 0.0 AT2G33815.1 | Symbols: | other RNA | chr2:14305008-14306053 RE... 1275 0.0 > AT2G33810.1 | Symbols: SPL3 | squamosa promoter binding protein-like 3 | chr2:14305001-14306072 FORWARD LENGTH=981 Length=981 Score = 1369 bits (741), Expect = 0.0 Identities = 869/928 (94%), Gaps = 20/928 (2%) Strand=Plus/Plus Query 41 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATTCATGTATGCATATACAAAATAAT 100 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 65 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATGCATGTATGCATATACAAAATAAT 124 Query 101 AGAGCACTAAAGCTTGTTCGTACttttttttACAGAACATGCTAATAATTTTTATACCTT 160 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 125 AGAGCACTAAAGCTTGTTCGTACTCTTTTTTACACAACATGCTAATAATTTTTATACCTT 184 Query 161 AGGAGTGAAAATTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 220 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 AGGAGTGAAATTTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 244 Query 221 TGGGGCTCCTTTATAtctcttccaatgtttacttgtacttcctcttcgtcttcttctctt 280 ||||||||||||||||||||||||||| |||||| ||| | || | |||||||||||| Sbjct 245 TGGGGCTCCTTTATATCTCTTCCAATGGTTACTTTTAC-T--TC--C-TCTTCTTCTCTT 298 Query 281 cttgttccctctttcATGTgagagagagagagagTTGAAATTTGCAGATGAGTATGAGAA 340 |||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 299 CTTGTTCCATCTTTCATGT----GAGAGAGAGAGTTGAATTTTGCAGATGAGTATGAGAA 354 Query 341 GAAGCAAAGCGGAAGGTAAGAGGAGTTTACAAGAAATGAGTGAGgaagagg-ag--gacg 397 |||||||||||||||| |||||||| |||| |||| ||||||||||||||| || || | Sbjct 355 GAAGCAAAGCGGAAGGGAAGAGGAGCTTACGAGAACTGAGTGAGGAAGAGGAAGAAGAAG 414 Query 398 aagaaacagaagatgaagatacttttgaagaagaagaggctttggagaagaagcagaaag 457 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 AAGAAACTGAAGATGAAGATACTTTTGAAGAAGAAGAGGCTTTGGAGAAGAAGCAGAAAG 474 Query 458 CTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 517 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 534 Query 518 AGGCCAAACAGTACCACAAACGACATAAAGTCTGCGAGTTTCATGCCAAAGCTCCTCTTG 577 | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| || Sbjct 535 AAGCCAAACAGTACCACAAACGACACAAAGTCTGCCAGTTTCATGCCAAAGCTCCTCATG 594 Query 578 TTCGGATCTATGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGAGCTCA 637 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 595 TTCGGATCTCTGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGCGCTCA 654 Query 638 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 697 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 714 Query 698 GGCGGAAAAGCACAACTGAATAAAGACGGTGAAAGGTGTGAGATCCCAATTTGAAGGTTA 757 ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct 715 GGCGGAAAAGCACAACTGACTAAAGACGGTGAAACGTGTGAGATCCCGGTTTGAAGGTTA 774 Query 758 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 817 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 834 Query 818 TGTATCC-TCTCTTTC-C-ATATTACCTGCAATCAAAGCTATCTGCTAAACCTATGACAT 874 ||| || ||| |||| | |||||||||| |||||||||||||||||||||||| ||||| Sbjct 835 TGTCTCTGTCTGTTTCTCCATATTACCTGTAATCAAAGCTATCTGCTAAACCTACGACAT 894 Query 875 GATTAAATAAATGCATTAAGACTT-GATAAATGGTTCAAGGAAT-ATGTGTAAGA-CTGT 931 | ||||||||||||||| |||||| | |||||| || ||| ||| |||||||| | || | Sbjct 895 GGTTAAATAAATGCATTGAGACTTAG-TAAATGCTTGAAGAAATTATGTGTAATAACTCT 953 Query 932 TTAAACTTGGAAAATGTTATTTCAAGCC 959 ||||||||| ||||||||||||||||| Sbjct 954 TTAAACTTGTCAAATGTTATTTCAAGCC 981 > AT2G33815.1 | Symbols: | other RNA | chr2:14305008-14306053 REVERSE LENGTH=951 Length=951 Score = 1275 bits (690), Expect = 0.0 Identities = 840/909 (92%), Gaps = 24/909 (3%) Strand=Plus/Minus Query 41 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATTCATGTATGCATATACAAAATAAT 100 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 894 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATGCATGTATGCATATACAAAATAAT 835 Query 101 AGAGCACTAAAGCTTGTTCGTACttttttttACAGAACATGCTAATAATTTTTATACCTT 160 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 834 AGAGCACTAAAGCTTGTTCGTACTCTTTTTTACACAACATGCTAATAATTTTTATACCTT 775 Query 161 AGGAGTGAAAATTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 220 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 AGGAGTGAAATTTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 715 Query 221 TGGGGCTCCTTTATAtctcttccaatgtttacttgtacttcctcttcgtcttcttctctt 280 ||||||||||||||||||||||||||| |||||| |||||||||||| | | || || | Sbjct 714 TGGGGCTCCTTTATATCTCTTCCAATGGTTACTTTTACTTCCTCTTC-T-T-CT-CT-T- 661 Query 281 cttgttccctctttcATGTgagagagagagagagTTGAAATTTGCAGATGAGTATGAGAA 340 |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 660 CTTGTTCCATCTTTCATGTGAGAGAGAGAG----TTGAATTTTGCAGATGAGTATGAGAA 605 Query 341 GAAGCAAAGCGGAAGGTAAGAGGAGTTTACAAGAAATGAGTGAGgaagagga-g--gacg 397 |||||||||||||||| |||||||| |||| |||| |||||||||||||||| | || | Sbjct 604 GAAGCAAAGCGGAAGGGAAGAGGAGCTTACGAGAACTGAGTGAGGAAGAGGAAGAAGAAG 545 Query 398 aagaaacagaagatgaagatacttttgaagaagaagaggctttggagaagaagcagaaag 457 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 AAGAAACTGAAGATGAAGATACTTTTGAAGAAGAAGAGGCTTTGGAGAAGAAGCAGAAAG 485 Query 458 CTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 517 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 GTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 425 Query 518 AGGCCAAACAGTACCACAAACGACATAAAGTCTGCGAGTTTCATGCCAAAGCTCCTCTTG 577 | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| || Sbjct 424 AAGCCAAACAGTACCACAAACGACACAAAGTCTGCCAGTTTCATGCCAAAGCTCCTCATG 365 Query 578 TTCGGATCTATGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGAGCTCA 637 ||||||||| |||||||||||||||||||| | | |||||||||| ||||| Sbjct 364 TTCGGATCTCTGGTCTTCACCAACGTTTCTTTTGTTTTT--A--AGGTTTCACGCGCTCA 309 Query 638 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 697 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 249 Query 698 GGCGGAAAAGCACAACTGAATAAAGACGGTGAAAGGTGTGAGATCCCAATTTGAAGGTTA 757 ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct 248 GGCGGAAAAGCACAACTGACTAAAGACGGTGAAACGTGTGAGATCCCGGTTTGAAGGTTA 189 Query 758 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 817 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 129 Query 818 TGTATCC-TCTCTTTC-C-ATATTACCTGCAATCAAAGCTATCTGCTAAACCTATGACAT 874 ||| || ||| |||| | |||||||||| |||||||||||||||||||||||| ||||| Sbjct 128 TGTCTCTGTCTGTTTCTCCATATTACCTGTAATCAAAGCTATCTGCTAAACCTACGACAT 69 Query 875 GATTAAATAAATGCATTAAGACTT-GATAAATGGTTCAAGGAAT-ATGTGTAAGA-CTGT 931 | ||||||||||||||| |||||| | |||||| || ||| ||| |||||||| | || | Sbjct 68 GGTTAAATAAATGCATTGAGACTTAG-TAAATGCTTGAAGAAATTATGTGTAATAACTCT 10 Query 932 TTAAACTTG 940 ||||||||| Sbjct 9 TTAAACTTG 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46918693298 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5