BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482337 Length=609 Score E Sequences producing significant alignments: (Bits) Value AT2G33830.2 | Symbols: | Dormancy/auxin associated family prot... 765 0.0 > AT2G33830.2 | Symbols: | Dormancy/auxin associated family protein | chr2:14309484-14310351 REVERSE LENGTH=676 Length=676 Score = 765 bits (414), Expect = 0.0 Identities = 560/625 (90%), Gaps = 32/625 (5%) Strand=Plus/Plus Query 1 TACTTCACACTTGACACAATTCTATCCAAAATCAACCCCAAGCAATACAGAAGaaaaaaa 60 ||||||||||||||||||||||||||||||||||| ||| | || | | |||||| ||| Sbjct 12 TACTTCACACTTGACACAATTCTATCCAAAATCAA-CCC-A--AA-A-A-AAGAAAGAAA 64 Query 61 GATGTGGGATGAAACTGTAGCCGGACCTAAGCCGGAGCATGGCCTTGGCCGTCTCCGCAA 120 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 65 TATGTGGGATGAAACTGTAGCCGGACCTAAACCGGAGCATGGCCTTGGCCGCCTCCGCAA 124 Query 121 TAATATCACCGCCCAACCCCTTGACATCAAAGGTGTAGGAGAAGGGAGCAGTAGCAAAAC 180 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 125 TAAGATCACCACCCAACCCCTTGACATCAAAGGTGTAGGAGAAGGGAGCAGTAGTAAAAC 184 Query 181 TGTGGCGGCAGTTG-CGGGAAGTCCCGGGACTCCGACGACACCAGGATCGGCGCGTAAGG 239 ||||||||| || | |||| ||||| || ||||||||||| ||||||||||||||||||| Sbjct 185 TGTGGCGGCGGTGGCCGGG-AGTCCTGGAACTCCGACGACGCCAGGATCGGCGCGTAAGG 243 Query 240 AGAACGTGTGGAGAAGTGTGTTTCATCCAGGAAGTAACATCGCCACCAGAGGAATGGGAA 299 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 244 AAAACGTGTGGAGAAGTGTGTTTCATCCAGGAAGTAACATCGCCACTAGAGGAATGGGCA 303 Query 300 CAAACCTCTTCGACAAGCCTTCTCACCCAAACTCTCCCACCGTCTACGATTGGCTATACA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CAAACCTCTTCGACAAGCCTTCTCACCCAAACTCTCCCACCGTCTACGATTGGCTATACA 363 Query 360 GCGACGATACTAGGAGCAAGCACCGTTGAGCCGATGAGGACAGAGTGACATGCGAGTGAT 419 ||||||| |||||||||||||||||||||||||| |||| ||||||||||| || |||| Sbjct 364 GCGACGACACTAGGAGCAAGCACCGTTGAGCCGA-GAGGGTAGAGTGACATGAGAATGAT 422 Query 420 GTCAAAT---------C-----GCCACGTGTTTATGTTCTGTTTCTTCTATTTTGGCTGT 465 || |||| | ||||||||||||||||||||||| |||||||||||| | Sbjct 423 GTAAAATAATTATGTTCTTTACGCCACGTGTTTATGTTCTGTTTCGTCTATTTTGGCTAT 482 Query 466 AT-TCGCAATCTTTTATTTTACTTCTTGTCGTTTAATTTGTGGATGTTAGTGACCGTTGA 524 || | |||||||||||||| |||| |||||||| | | | |||||||||||||||| Sbjct 483 ATGT-GCAATCTTTTATTTG-CTTCATGTCGTTTG-TGT-T---TGTTAGTGACCGTTGA 535 Query 525 TCTCCACCATCTGGGTTGGTTTTTAACTTTTAACGGTGGCGATGCGTCTTCAGTGTCTTG 584 | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 536 TTTCCACCATCTGGGTTAGTTTTTAGCTTTTAACGGTGGCGATGCGTCTTCAGTGTCTTG 595 Query 585 TAATGTTTCTACTGTTCTGTAATAT 609 |||| ||| |||||||| ||||||| Sbjct 596 TAATATTTTTACTGTTCGGTAATAT 620 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29336741848 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5