BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482367 Length=1897 Score E Sequences producing significant alignments: (Bits) Value AT2G34250.1 | Symbols: | SecY protein transport family protein... 3081 0.0 AT1G29310.1 | Symbols: | SecY protein transport family protein... 1738 0.0 > AT2G34250.1 | Symbols: | SecY protein transport family protein | chr2:14462059-14464862 FORWARD LENGTH=1912 Length=1912 Score = 3081 bits (1668), Expect = 0.0 Identities = 1834/1910 (96%), Gaps = 28/1910 (1%) Strand=Plus/Plus Query 1 GAAAATGGATTATAAGGTGACCTTCGTCTTTGGTTGACCATC-AAAACTACAACGCTCTT 59 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 18 GAAAATGGATTATAAGGTGACCTTCGTCTTTGGTTGACCATCAAAAACTACAACGCTCTT 77 Query 60 TCTCCGTAGGAAAGGGGAACGCAAATAAATAAAATTATCGAAG-CCATTGGTTTCGGAGC 118 ||||||||||||||||||| || |||| |||||||||||| ||| |||||||||||| Sbjct 78 TCTCCGTAGGAAAGGGGAA-GC----AAAT-AAATTATCGAAGCCCACTGGTTTCGGAGC 131 Query 119 TGATCGGTCTCTATTTCTCTCGT-A-AGCTTCTCCTCAAGCAGATAAACTTGATCGGATA 176 ||||||||||||||||||||| | | | | | | |||||||||||||| ||||||||||| Sbjct 132 TGATCGGTCTCTATTTCTCTCTTCATA-CATAT-CTCAAGCAGATAAAGTTGATCGGATA 189 Query 177 CTAGAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCCTT-GCGTTTT-T 234 |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| | Sbjct 190 CTAGAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATT-CTTGGC-TTTTCT 247 Query 235 GCCTGAGGTTCAGAGTGCTGACAGGAAGGTGCCATTCAGAGAGAAGGTTATCTACACTGT 294 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 248 GCCTGAGGTTCAGAGTGCTGATAGGAAGGTTCCATTCAGAGAGAAGGTTATCTACACTGT 307 Query 295 CATCTCTCTCTTCATCTTTCTTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCAC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308 CATCTCTCTCTTCATCTTTCTTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCAC 367 Query 355 GACTGGTGCTGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGT 414 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 CACCGGTGCGGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGT 427 Query 415 CATGGAGCTTGGTATTACTCCTATTGTCACATCTGGACTTGTGATGCAACTCTTGGCTGG 474 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 428 CATGGAGCTCGGTATTACTCCTATTGTTACATCTGGACTTGTGATGCAACTCTTGGCTGG 487 Query 475 TTCCAAGATTATTGAGGTTGACAACAATGTCCGTGAGGATCGTGCCCTCTTGAATGGTGC 534 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 488 TTCCAAGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCCCTCTTGAATGGTGC 547 Query 535 TCAGAAGCTTCTAGGTATTCTGATCGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGG 594 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 548 TCAGAAGCTTCTAGGTATTCTGATTGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGG 607 Query 595 AATGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTCCAGCT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 608 AATGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTTCAGCT 667 Query 655 TTTCTTTGCTGGAATCATTGTTATCTGCCTTGATGAGCTCCTTCAGAAGGGATATGGTCT 714 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 668 TTTCTTTGCTGGAATCATTGTTATCTGCCTTGATGAACTCCTTCAGAAGGGATATGGTCT 727 Query 715 CGGATCAGGAATCTCCCTTTTCATTGCCACCAACATCTGTGAAAGCATTATCTGGAAGGC 774 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 728 CGGATCAGGAATCTCCCTTTTCATTGCCACCAACATTTGTGAAAGCATTATCTGGAAGGC 787 Query 775 ATTTAGCCCAACTACCATCAACACTGGACGTGGAGCTGAGTTTGAAGGTGCCGTTATTGC 834 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 788 ATTTAGCCCAACTACCATCAACACCGGGCGTGGAGCTGAGTTTGAAGGTGCTGTTATTGC 847 Query 835 ACTGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTA 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 848 ACTGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTA 907 Query 895 CCGGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGT 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 908 CCGGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGT 967 Query 955 GATCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACA 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 968 GATCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACA 1027 Query 1015 ACAGGGTTCTTACCCAATCAAGCTGTTTTACACCTCTAACATGCCCATCATCCTCCAATC 1074 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1028 ACAGGGTTCTTACCCAATCAAGCTGTTCTACACCTCTAACATGCCCATCATCCTCCAATC 1087 Query 1075 CGCTCTTGTCTCAAATCTTTACTTCATCTCTCAGCTTCTCTACAGGAAGTTCAGTGGAAA 1134 ||| || |||||||||||||||||||| ||||||||||||||| |||||||||| ||||| Sbjct 1088 CGCCCTCGTCTCAAATCTTTACTTCATTTCTCAGCTTCTCTACCGGAAGTTCAGCGGAAA 1147 Query 1135 TTTCTTTGTAAACCTTTTGGGACAGTGGAAAGAATCTGAGTACAGTGGGCAATCCATTCC 1194 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 1148 TTTCTTTGTAAACCTTTTGGGACAATGGAAAGAATCTGAGTACAGTGGACAATCTATTCC 1207 Query 1195 AGTTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGCTTCTCTGACATGGCAGCTCA 1254 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1208 AGTTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGTTTCTCTGACATGGCAGCTCA 1267 Query 1255 CCCGTTCCATGCACTGTTCTACATTGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAA 1314 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1268 CCCGTTCCATGCACTGTTCTACATCGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAA 1327 Query 1315 GACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACA 1374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1328 GACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACA 1387 Query 1375 ACAAATGGTGATGCCAGGACACAGAGAGTCAAACTTGCAGAAGGAACTGAACAGGTATAT 1434 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || Sbjct 1388 ACAAATGGTGATGCCAGGACACAGAGAATCAAACTTACAGAAGGAACTGAACAGATACAT 1447 Query 1435 CCCAACAGCAGCAGCTTTTGGAGGAGTGTGTATCGGTGCACTCACAGTTCTGGCTGATTT 1494 ||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||| Sbjct 1448 CCCAACAGCAGCAGCTTTTGGAGGAGTTTGTATCGGTGCACTTACCGTTTTGGCTGATTT 1507 Query 1495 CATGGGAGCCATCGGGTCGGGAACCGGAATTCTGTTGGCGGTCACGATCATATACCAGTA 1554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1508 CATGGGAGCCATCGGGTCGGGAACCGGAATTCTGTTGGCGGTCACGATCATATACCAGTA 1567 Query 1555 TTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAGCTCGGCTTCTTCGGGTTCTAAGTTAG 1614 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1568 TTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAACTCGGCTTCTTCGGGTTCTAAGTTAG 1627 Query 1615 CTTAAAGAAGGTGTAAAACTTTGC-TGAGACAAAAA-GCAGAGCAGAAGAGGCTTTAGCT 1672 ||||||||||||||||| |||||| |||| |||||| ||||||||||||||||||||||| Sbjct 1628 CTTAAAGAAGGTGTAAA-CTTTGCCTGAGGCAAAAAAGCAGAGCAGAAGAGGCTTTAGCT 1686 Query 1673 TCTGTGCCCACCTCAAACA--GACAATTTGTGGTGGCACTTTGGGGTAGACTACtttttt 1730 ||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| Sbjct 1687 TCTGTGCCCACCTCAAACACAGACAATTTGTGGTGGCACTT-GGGTTAGACTACTTTTTT 1745 Query 1731 tttttgttgttcaaacgaaattttcgctttagtcatttatgtttttttgttacttttaA- 1789 || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1746 TTGTTGTTGTTGAAACGAAATTTTCTCTTTAGTCATTTATGTTTTTTTGTTACTTTTTAC 1805 Query 1790 AAGTTAAGAAAAACTTATGTGATAGACGCTTTTCTAATGTATGTTTCTAGGAATTTCACT 1849 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1806 AAGTTAA-AAAA-CTTATGTGATAGACGCTTTTCTAATGTATGTTTCTAGGAATTTCACT 1863 Query 1850 CTT-GACC-AGAATAAACAATTTTACAGTTTTGAATTCAAAGCAATTTAT 1897 ||| |||| | ||||||||| ||||||||||||||| ||||||||||||| Sbjct 1864 CTTTGACCCA-AATAAACAAATTTACAGTTTTGAATACAAAGCAATTTAT 1912 > AT1G29310.1 | Symbols: | SecY protein transport family protein | chr1:10252294-10254690 FORWARD LENGTH=1700 Length=1700 Score = 1738 bits (941), Expect = 0.0 Identities = 1272/1434 (89%), Gaps = 14/1434 (1%) Strand=Plus/Plus Query 181 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCCTTG-CGTTT-TTGCCT 238 ||||||||||||||||||||||||||||||||||||||||||| ||| | ||| || || Sbjct 108 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTC-TTGGCTTTTCTT-CCA 165 Query 239 GAGGTTCAGAGTGCTGACAGGAAGGTGCCATTCAGAGAGAAGGTTATCTACACTGTCATC 298 || || || ||||||||||||||| | ||||| |||||||| || ||||||||||||||| Sbjct 166 GAAGTGCAAAGTGCTGACAGGAAGATTCCATTTAGAGAGAAAGTGATCTACACTGTCATC 225 Query 299 TCTCTCTTCATCTTTC-TTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCACGAC 357 || |||||||| |||| |||| || |||||||||||||| ||||| |||||||| || || Sbjct 226 TCCCTCTTCAT-TTTCCTTGTTTGTAGTCAGCTTCCTCTCTATGGGATCCATTCTACCAC 284 Query 358 TGGTGCTGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGTCAT 417 ||||||||||| ||||||||||||||||||||||| || || || |||||||| || || Sbjct 285 CGGTGCTGATCCGTTCTATTGGATGCGTGTCATTCTCGCATCGAATCGTGGAACGGTGAT 344 Query 418 GGAGCTTGGTATTACTCCTATTGTCACATCTGGACTT-GTGATGCAACTCTTGGCTGGTT 476 |||||||||||||||||||||||||||||||||| || |||||||||||||| || || | Sbjct 345 GGAGCTTGGTATTACTCCTATTGTCACATCTGGA-TTAGTGATGCAACTCTTAGCAGGGT 403 Query 477 CCAAGATTATTGAGGTTGACAACAATGTCCGTGAGGATCGTGCCCTCTTGAATGGTGCTC 536 | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 404 CAAAGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCTCTCTTGAATGGTGCTC 463 Query 537 AGAAGCTTCTAGGTATTCTGATCGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGGAA 596 |||||||||| || |||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 464 AGAAGCTTCTTGGGATTCTGATTGCTATTGGTGAGGCTGTTGCATATGTTCTTTCGGGAA 523 Query 597 TGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTCCAGCTTT 656 |||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 524 TGTATGGTCCTGTTGGTCAACTTGGTGTTGGAAATGCTATTCTGATCATCCTCCAGCTTT 583 Query 657 TCTTTGCTGGAATCATTGTTATCTGCCTTGATGAGCTCCTTCAGAAGGGATATGGTCTCG 716 |||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| | Sbjct 584 TCTTTGCTGGAATCATCGTTATCTGTCTTGACGAGCTTCTTCAGAAGGGATATGGTCTTG 643 Query 717 GATCAGGAATCTCCCTTTTCATTGCCACCAACATCTGTGAAAGCATTATCTGGAAGGCAT 776 | || |||||||| |||||||| || ||||| ||||||||||||||||||||||| |||| Sbjct 644 GCTCTGGAATCTCTCTTTTCATAGCAACCAATATCTGTGAAAGCATTATCTGGAAAGCAT 703 Query 777 TTAGCCCAACTACCATCAACACTGGACGTGGAGCTGAGTTTGAAGGTGCCGTTATTGCAC 836 ||||||| || || ||||||||||| |||||||||||||||||||| || || ||||| Sbjct 704 TTAGCCCCACGACAATCAACACTGGTCGTGGAGCTGAGTTTGAAGGCGCTGTGATTGCGT 763 Query 837 TGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTACC 896 ||||||||||||||||||| |||||||| |||||||| || ||| | |||||||| |||| Sbjct 764 TGTTCCATATGCTGATAACTAAGTCCAATAAGGTTGCTGCGCTCAGACAAGCTTTTTACC 823 Query 897 GGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGTGA 956 |||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| | Sbjct 824 GGCAGAACCTTCCAAATGTTACCAACTTGCTTGCAACAGTGTTGATCTTCTTGATTGTTA 883 Query 957 TCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAAC 1016 | ||||||||||| |||||||| || ||||| ||||| ||||||| ||| ||||| |||| Sbjct 884 TATACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAGGTCAAAGAGTGCTCGTGGCCAAC 943 Query 1017 AGGGTTCTTACCCAATCAAGCTGTTTTACACCTCTAACATGCCCATCATCCTCCAATCCG 1076 ||||||| ||||| ||||||||||| |||||||| |||||||| ||||| ||||| || | Sbjct 944 AGGGTTCATACCCGATCAAGCTGTTCTACACCTCCAACATGCCAATCATTCTCCAGTCTG 1003 Query 1077 CTCTTGTCTCAAATCTTTACTTCATCTCTCAGCTTCTCTACAGGAAGTTCAGTGGAAATT 1136 |||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1004 CTCTCGTCTCAAACCTCTACTTCATCTCTCAGCTTCTCTACAGGAAATTCAGTGGAAATT 1063 Query 1137 TCTTTGTAAACCTTTTGGGACAGTGGAAAGAATCTGAGTACAGTGGGCAATCCATTCCAG 1196 ||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| || |||| Sbjct 1064 TCTTTGTGAACCTATTGGGACAGTGGAAAGAATCAGAGTACAGTGGACAATCTATACCAG 1123 Query 1197 TTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGCTTCT-CTGACATGGCAGCTCAC 1255 |||||||||| || || | ||||||||||| ||||| || | | || ||||||||||| Sbjct 1124 TTAGTGGTCTTGCATATTTGATCACAGCTCCGGCAAGTTT-TGCCGATATGGCAGCTCAT 1182 Query 1256 CCGTTCCATGCACTGTTCTACATTGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAAG 1315 || |||||||| |||||||| || ||||||||||||||||||||||| || |||||||| Sbjct 1183 CCATTCCATGCTCTGTTCTATATCGTCTTCATGCTCACTGCTTGTGCCCTATTCTCAAAA 1242 Query 1316 ACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACAA 1375 ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| Sbjct 1243 ACATGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGTAGCTAAGCAGCTAAAGGAACAA 1302 Query 1376 CAAATGGTGATGCCAGGACACAGAGAGTCAAACTTGCAGAAGGAACTGAACAGGTATATC 1435 |||||||||||||| |||||||||||||| ||||| || ||||| |||||| |||| ||| Sbjct 1303 CAAATGGTGATGCCGGGACACAGAGAGTCCAACTTACAAAAGGAGCTGAACCGGTACATC 1362 Query 1436 CCAACAGCAGCAGCTTTTGGAGGAGTGTGTATCGGTGCACTCACAGTTCTGGCTGATTTC 1495 |||||||| || || |||||||||||||| |||||||| ||||| ||| ||||||||||| Sbjct 1363 CCAACAGCGGCTGCATTTGGAGGAGTGTGCATCGGTGCGCTCACTGTTTTGGCTGATTTC 1422 Query 1496 ATGGGAGCCATCGGGTCGGGAACCGGAATTCTG--TTGGCGGTCACGATCATATACCAGT 1553 ||||||||||| |||||||| || ||||| || ||| | ||||| |||||||| |||| Sbjct 1423 ATGGGAGCCATTGGGTCGGGGACTGGAAT-CTTACTTG-CAGTCACAATCATATATCAGT 1480 Query 1554 ATTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAGCTCGGCTTCTTCGGGTTCT 1607 |||| || ||||||||||||||||||||||| ||||| || ||||| || |||| Sbjct 1481 ATTTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGGTTTCTTTGGATTCT 1534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93925219695 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5