BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482401
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light h... 1275 0.0
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlor... 1075 0.0
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B b... 1029 0.0
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophy... 1007 0.0
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-b... 985 0.0
> AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522524-14523568 REVERSE
LENGTH=1045
Length=1045
Score = 1275 bits (690), Expect = 0.0
Identities = 722/738 (98%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 4 GCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAG 63
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 119 GCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCGCCAAGCCAAAG 178
Query 64 GGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTCTCC 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 GGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGGGTCCATTCTCC 238
Query 124 GGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACACCGCC 183
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 239 GGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGATGGGACACCGCT 298
Query 184 GGTCTATCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGC 243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGC 358
Query 244 AGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGA 418
Query 304 GTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGGAGGA 363
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 419 GTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGACGGAGGA 478
Query 364 TTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCT 538
Query 424 ACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCATTG 483
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 539 ACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAGATGGTCCATTG 598
Query 484 GGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACT 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACT 658
Query 544 GACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGCTATG 603
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 GACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATG 718
Query 604 TTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAAC 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAAC 778
Query 664 CTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAACTTC 723
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 779 CTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTCGCCACCAACTTC 838
Query 724 GTCCCCGGAAAGTAAGCG 741
||||||||||||| ||||
Sbjct 839 GTCCCCGGAAAGTGAGCG 856
Score = 73.1 bits (39), Expect = 4e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 751 ATGTAAATTTGTGAACTTTCCTTTGTGGTATCTTTGTAT 789
|||||||||||||||||||||||||||||||||||||||
Sbjct 912 ATGTAAATTTGTGAACTTTCCTTTGTGGTATCTTTGTAT 950
> AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein
complex II subunit B1 | chr2:14524756-14525763
FORWARD LENGTH=1008
Length=1008
Score = 1075 bits (582), Expect = 0.0
Identities = 651/685 (95%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 53 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGG 112
||||||| | |||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 178 CCAAGCCCACCGGTCCATCCGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGG 237
Query 113 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGAT 172
||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |
Sbjct 238 GTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAGTTCCCCGGTGATTACGGGT 297
Query 173 GGGACACCGCCGGTCTATCCGCTGA-CCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAA 231
||||||| |||||||||||||| || ||| ||||||||||| ||||||||||||||||||
Sbjct 298 GGGACACTGCCGGTCTATCCGCCGATCCC-GAGACCTTCGCTAGGAACCGTGAGCTAGAA 356
Query 232 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTG 416
Query 292 GCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTC 351
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 GCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTTC 476
Query 352 AGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTA 536
Query 412 GCCATTTGGGCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGA 471
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 537 GCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGGA 596
Query 472 AATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTG 531
|||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 GATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGGAGCTTCGACCCATTG 656
Query 532 GGCCTCGCTACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGG 591
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 GGCCTCGCTACTGACCCCGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 716
Query 592 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGA 651
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 717 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGA 776
Query 652 CCTTTGGAGAACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTC 711
|| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 777 CCGTTGGAGAACCTCGCGGACCACTTGGCTGATCCAGTCAACAACAATGCATGGGCCTTC 836
Query 712 GCCACCAACTTCGTCCCCGGAAAGT 736
|| ||||||||||||||||||||||
Sbjct 837 GCTACCAACTTCGTCCCCGGAAAGT 861
> AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472280-10473299 REVERSE LENGTH=1020
Length=1020
Score = 1029 bits (557), Expect = 0.0
Identities = 680/741 (92%), Gaps = 2/741 (0%)
Strand=Plus/Plus
Query 1 GCGGCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 60
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCGGCATCTGAAGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 179
Query 61 AAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTC 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 180 AAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTC 239
Query 121 TCCGGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACACC 180
|| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 TCTGGCGAGTCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACC 299
Query 181 GCCGGTCTATCCGCTGA-CCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCA 239
|| || || || ||||| ||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 300 GCTGGACTTTCAGCTGATCCC-GAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCA 358
Query 240 CAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAA 299
|||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 359 CAGCAGGTGGGCTATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCTAGGAA 418
Query 300 CGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGG 359
|||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 419 CGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTTAGCGATGG 478
Query 360 AGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTG 419
|||| | || |||||||| ||||| ||||||||||||||||||||||| || ||||||||
Sbjct 479 AGGACTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATTTTGGCCATTTG 538
Query 420 GGCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCC 479
||| |||||||| ||| | ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 539 GGCCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGCTACAGAGTCGCAGGAAATGGGCC 598
Query 480 ATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGC 539
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 599 GTTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTGGGTCTTGC 658
Query 540 TACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGC 599
||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 659 TACCGACCCAGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGC 718
Query 600 TATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGA 659
|||||||||||||||||||||||||||||||||||| ||||| || |||||||| | ||
Sbjct 719 TATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGA 778
Query 660 GAACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAA 719
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 779 GAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCAACCAA 838
Query 720 CTTCGTCCCCGGAAAGTAAGC 740
||| || |||||||||| |||
Sbjct 839 CTTTGTTCCCGGAAAGTGAGC 859
> AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478005-10479048 FORWARD
LENGTH=1044
Length=1044
Score = 1007 bits (545), Expect = 0.0
Identities = 675/740 (91%), Gaps = 0/740 (0%)
Strand=Plus/Plus
Query 1 GCGGCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 60
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 192
Query 61 AAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTC 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 AAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTC 252
Query 121 TCCGGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACACC 180
|| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 253 TCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACC 312
Query 181 GCCGGTCTATCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCAC 240
||||| || || |||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct 313 GCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTAGAAGTTATCCAC 372
Query 241 AGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAAC 300
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 373 AGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCTAGAAAC 432
Query 301 GGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGGA 360
||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 433 GGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGA 492
Query 361 GGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGG 420
|| | || |||||||| ||||| |||||||| |||||||||||||| || |||||||||
Sbjct 493 GGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTGG 552
Query 421 GCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCA 480
|| || ||||| || | |||||||| |||||||||||||||||||| |||||||| |||
Sbjct 553 GCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCA 612
Query 481 TTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCT 540
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 613 TTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTGGGTTTGGCT 672
Query 541 ACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGCT 600
|| ||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 673 ACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCT 732
Query 601 ATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAG 660
||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||
Sbjct 733 ATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGAG 792
Query 661 AACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAAC 720
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 793 AACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCCTTCGCCACCAAC 852
Query 721 TTCGTCCCCGGAAAGTAAGC 740
|| || |||||||||| |||
Sbjct 853 TTTGTTCCCGGAAAGTGAGC 872
> AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding
protein 2 | chr1:10474784-10475959 REVERSE LENGTH=1176
Length=1176
Score = 985 bits (533), Expect = 0.0
Identities = 672/741 (91%), Gaps = 2/741 (0%)
Strand=Plus/Plus
Query 1 GCGGCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 60
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 193
Query 61 AAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTC 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 194 AAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTC 253
Query 121 TCCGGCGAGCC-CCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACAC 179
|| |||||| | ||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 254 TCTGGCGAGTCACCC-AGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGATGGGACAC 312
Query 180 CGCCGGTCTATCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCA 239
|| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 313 AGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCA 372
Query 240 CAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAA 299
|||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 373 CAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCCAGGAA 432
Query 300 CGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGG 359
|||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| ||
Sbjct 433 CGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGG 492
Query 360 AGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTG 419
||| | || |||||||| ||||| |||||||| |||||||||||||| || ||||||||
Sbjct 493 AGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTG 552
Query 420 GGCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCC 479
||| || ||||| || | |||||||| |||||||| ||||||||||| |||||||| ||
Sbjct 553 GGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGAAATGGGCC 612
Query 480 ATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGC 539
|||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | ||
Sbjct 613 ATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTGGGTTTGGC 672
Query 540 TACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGC 599
||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| || |||||
Sbjct 673 TACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGAAGATTGGC 732
Query 600 TATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGA 659
|||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||
Sbjct 733 TATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGA 792
Query 660 GAACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAA 719
|||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 793 GAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTTGCCACCAA 852
Query 720 CTTCGTCCCCGGAAAGTAAGC 740
||| || |||||||||| |||
Sbjct 853 CTTTGTTCCCGGAAAGTGAGC 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5