BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482403 Length=987 Score E Sequences producing significant alignments: (Bits) Value AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlor... 1537 0.0 AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light h... 1026 0.0 AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B b... 966 0.0 AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophy... 933 0.0 AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-b... 933 0.0 > AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524756-14525763 FORWARD LENGTH=1008 Length=1008 Score = 1537 bits (832), Expect = 0.0 Identities = 934/984 (95%), Gaps = 3/984 (0%) Strand=Plus/Plus Query 6 TTAACTAAA-AACCATTTACTTGCACCACACTCTCACCGCAATGGCCGCCTCGACAATGG 64 ||||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 22 TTAACTAAAGAGCCTTTTACTTGCGCCACACTCTCACCGCAATGGCCGCCTCGACAATGG 81 Query 65 CTCTCTCCTCTCCTGCTATGGCCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAG 124 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 82 CTCTCTCCTCTCCTGCTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAG 141 Query 125 TATTTGGAATCGGCCGAGTTACCATGCGCAAAGCCTCCAAACCCACCGGTCCATCAGGCA 184 ||||||||| ||||||| | |||||||||||||||||||| |||||||||||||| |||| Sbjct 142 TATTTGGAACCGGCCGAATCACCATGCGCAAAGCCTCCAAGCCCACCGGTCCATCCGGCA 201 Query 185 GCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGA 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 202 GCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGA 261 Query 245 GCTACCTCACTGGAGAATTCCCCGGTGACTACGGGTGGGACACTGCCGGTCTATCCGCAG 304 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 262 GCTACCTCACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCG 321 Query 305 ACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGC 364 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 ATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGC 381 Query 365 TCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTGGCTCGCAATGGAGTCAAATTCGGAG 424 ||||||||||||||||||||||||||||||| |||||| | || ||||| || ||||||| Sbjct 382 TCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAG 441 Query 425 AGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGGAGGATTGGACTACTTGG 484 | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 442 AAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGG 501 Query 485 GCAATCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCCACTCAAGTGATCC 544 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 502 GCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCC 561 Query 545 TCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCATTGGGAGAGGCAGAGG 604 |||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||| Sbjct 562 TCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGG 621 Query 605 ACTTGCTTTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTACTGACCCCGAGGCGT 664 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| | Sbjct 622 ACTTGCTTTACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGC-T 680 Query 665 TT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTT 723 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 681 TTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTT 740 Query 724 GGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAATCTTGCTGACCAC 783 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 741 GGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCAC 800 Query 784 TTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAG 843 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 801 TTGGCTGATCCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAG 860 Query 844 TGAGTTTAATATGTGATCAAGTTGTGTGTATCTGGTTTGTTGAATCTTGGAAATGTGATG 903 |||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||| Sbjct 861 TGAGTTTAATTTGTGATCGAGTTGTGTGTATCCGGTTTGTTGCATCTTGGAAATGTGATG 920 Query 904 CAGATTTCATCTCTTGTATATTACTTTGTAAGTGTGTGAAATATTTAAGAAGCTTTATGA 963 |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 921 CAGATTTCATATCTTGTAAATTACTTTGTATGTGTGTGAAATATTTAAGAAGCTTTATGA 980 Query 964 TATTGATGGATCAGTCACTTACTA 987 |||||||||||||||||||||||| Sbjct 981 TATTGATGGATCAGTCACTTACTA 1004 > AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522524-14523568 REVERSE LENGTH=1045 Length=1045 Score = 1026 bits (555), Expect = 0.0 Identities = 726/808 (90%), Gaps = 13/808 (2%) Strand=Plus/Plus Query 45 AATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGGAAAGGCCGTTAAGC 103 |||||| |||| || |||||| | ||||| |||| || | ||||||||||| || ||| Sbjct 55 AATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCT-TCGCCGGAAAGGCTGTGAAG- 112 Query 104 TATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAA-A--GCCT 160 || || || || || || | |||| |||||| || |||||| | || | | | Sbjct 113 -----CCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCG 167 Query 161 CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGG 220 |||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 168 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGG 227 Query 221 GTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGGGT 280 ||||||||||||| ||||| ||||||||||| || || || ||||||||||||||||| | Sbjct 228 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGAT 287 Query 281 GGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 340 ||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 288 GGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 347 Query 341 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTGG 400 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 348 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGG 407 Query 401 CTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCA 460 || | || ||||| || |||||||| || |||||||||||||| |||||||||||||||| Sbjct 408 CTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCA 467 Query 461 GCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 520 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 468 GCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 527 Query 521 CCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAA 580 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 528 CCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAG 587 Query 581 ATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTTGACCCATTGG 640 |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 588 ATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGG 647 Query 641 GCCTTGCTACTGACCCCGAGGCGTTT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 699 |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 648 GCCTCGCTACTGACCCCGAGGC-TTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 706 Query 700 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGA 759 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 707 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGA 766 Query 760 CCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTC 819 || |||||||| || || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 767 CCTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTC 826 Query 820 GCTACCAACTTCGTCCCCGGAAAGTGAG 847 || ||||||||||||||||||||||||| Sbjct 827 GCCACCAACTTCGTCCCCGGAAAGTGAG 854 > AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B binding protein 3 | chr1:10472280-10473299 REVERSE LENGTH=1020 Length=1020 Score = 966 bits (523), Expect = 0.0 Identities = 716/810 (88%), Gaps = 9/810 (1%) Strand=Plus/Plus Query 44 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGGAAAGGCCGTTAAG 102 ||||||||||||| ||||||||||||||||| |||| || | ||||||||||| || || Sbjct 52 CAATGGCCGCCTCCACAATGGCTCTCTCCTCCCCTGCCT-TCGCCGGAAAGGCTGTGAAC 110 Query 103 CTATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAAAG-C--C 159 || ||||| ||||| || ||||| | |||| |||||| || || ||| | ||| | Sbjct 111 CTTTCCCCCGCGGCATCTGAAGTCCTCGGAAGCGGCCGTGTGACAATGAG-GAAGACTGT 169 Query 160 T-CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTT 218 | |||| || | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 TGCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTT 229 Query 219 GGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGG 278 |||||||||||| || ||| | ||||||||||| || ||||| |||||||| |||||||| Sbjct 230 GGGTCCATTCTCTGGCGAGTCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGG 289 Query 279 GTGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGA 338 |||||||| || || || || || || |||||||| ||||| ||||||||||||||||| Sbjct 290 ATGGGACACCGCTGGACTTTCAGCTGATCCCGAGACATTCGCAAGGAACCGTGAGCTAGA 349 Query 339 AGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTT 398 ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || Sbjct 350 AGTTATCCACAGCAGGTGGGCTATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTT 409 Query 399 GGCTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 458 |||| | || |||||||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct 410 GGCTAGGAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTT 469 Query 459 CAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTT 518 |||||||||||| | || |||||||| || || ||||||||||||||||||||||| || Sbjct 470 TAGCGATGGAGGACTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATTTT 529 Query 519 AGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGG 578 |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| || Sbjct 530 GGCCATTTGGGCCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGCTACAGAGTCGCAGG 589 Query 579 AAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTTGACCCATT 638 |||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 590 AAATGGGCCGTTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATT 649 Query 639 GGGCCTTGCTACTGACCCCGAGGCGTTT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACG 697 ||| |||||||| ||||| ||||| ||| || |||||||||||||||||||||||||||| Sbjct 650 GGGTCTTGCTACCGACCCAGAGGC-TTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACG 708 Query 698 GAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGG 757 |||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||| Sbjct 709 GAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGG 768 Query 758 GACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCCT 817 ||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 769 GACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCT 828 Query 818 TCGCTACCAACTTCGTCCCCGGAAAGTGAG 847 |||| |||||||| || ||||||||||||| Sbjct 829 TCGCAACCAACTTTGTTCCCGGAAAGTGAG 858 > AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478005-10479048 FORWARD LENGTH=1044 Length=1044 Score = 933 bits (505), Expect = 0.0 Identities = 719/823 (87%), Gaps = 11/823 (1%) Strand=Plus/Plus Query 33 CACT-CTC-ACCGCAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGG 89 |||| ||| ||| ||||||||||||| ||||||||||||||||| |||| || | ||||| Sbjct 52 CACTACTCAACCTCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCT-TCGCCGG 110 Query 90 AAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCAT 149 |||||||| ||||| ||||| ||||| || ||||| |||||| |||||| || || || Sbjct 111 TAAGGCCGTCAAGCTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAAT 170 Query 150 GCGCAAAG-C--CT-CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACC 205 | | ||| | | |||| || | || |||||||||||||||||||||||||| |||| Sbjct 171 GAG-GAAGACTGTTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACC 229 Query 206 GAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCC 265 | ||||||||||||||||||||||| || || | ||||||||||| || ||||| |||| Sbjct 230 GTGTCAAGTACTTGGGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCC 289 Query 266 CCGGTGACTACGGGTGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGA 325 |||| |||||||| |||||||| ||||| || || || ||||||||||| ||||| |||| Sbjct 290 CCGGAGACTACGGATGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGA 349 Query 326 ACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTT 385 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 350 ACCGTGAACTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCT 409 Query 386 TCCCTGAGCTGTTGGCTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTG 445 |||||||||| |||||| | || |||||||| ||||||||||| |||||||||||||| | Sbjct 410 TCCCTGAGCTTTTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCG 469 Query 446 GTTCACAGATCTTCAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACG 505 ||||||||||||||||||||||||| | || |||||||| || || |||||||| |||| Sbjct 470 GTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACG 529 Query 506 CTCAGAGCATCTTAGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCT 565 |||||||||| || |||||||||||||| ||||| || | |||||||| |||||||||| Sbjct 530 CTCAGAGCATTTTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCT 589 Query 566 ACAGAGTCGCCGGAAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCA 625 |||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct 590 ACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCA 649 Query 626 GCTTTGACCCATTGGGCCTT-GCTACTGACCCCGAGGCGTTTGCAGAGTTGAAGGTGAAG 684 |||| ||||||||||| || ||||| ||||| ||||| || || ||||||||||||||| Sbjct 650 GCTTCGACCCATTGGG-TTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAG 708 Query 685 GAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATT 744 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 709 GAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATC 768 Query 745 GTCACCGGAAAGGGACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAAC 804 ||||| || ||||||||| | ||||| ||||||||||| |||||||||||||| |||||| Sbjct 769 GTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAAC 828 Query 805 AACGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAGTGAG 847 ||||||||||||||||| |||||||| || ||||||||||||| Sbjct 829 AACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGAG 871 > AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding protein 2 | chr1:10474784-10475959 REVERSE LENGTH=1176 Length=1176 Score = 933 bits (505), Expect = 0.0 Identities = 711/811 (88%), Gaps = 11/811 (1%) Strand=Plus/Plus Query 44 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTGCTATGGCCGGAAAGGCCGTTAAGC 103 ||||||||||||| ||||||||||||||||| |||||| | ||||||||||| || || | Sbjct 66 CAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAACC 125 Query 104 TATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAAAG-C--CT 160 | ||||| ||||| || ||||| |||||| |||||| || || ||| | ||| | | Sbjct 126 TTTCCCCTGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAG-GAAGACTGTT 184 Query 161 -CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 219 |||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 244 Query 220 GGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGGG 279 ||||||||||| || ||| | || |||||||| || ||||| ||||| || |||||||| Sbjct 245 GGTCCATTCTCTGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGA 304 Query 280 TGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAA 339 |||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 305 TGGGACACAGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 364 Query 340 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTG 399 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 365 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 424 Query 400 GCTC-GCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 458 || | | || |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 425 GC-CAGGAACGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 483 Query 459 CAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTT 518 |||||||||||| | || |||||||| || || |||||||| |||||||||||||| || Sbjct 484 CAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTT 543 Query 519 AGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGG 578 |||||||||||||| ||||| || | |||||||| |||||||| ||||||||||| || Sbjct 544 GGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGG 603 Query 579 AAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTT-GACCCAT 637 |||||| |||||||||||||| ||||||||||||||||| |||||||| ||| ||||||| Sbjct 604 AAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAG-TTTCGACCCAT 662 Query 638 TGGGCCTTG-CTACTGACCCCGAGGCGTTTGCAGAGTTGAAGGTGAAGGAGCTCAAGAAC 696 |||| ||| |||| ||||| ||||| || || ||||||||||| ||||||||||||||| Sbjct 663 TGGGT-TTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAAC 721 Query 697 GGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAG 756 ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 722 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAG 781 Query 757 GGACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCC 816 |||||| | ||||| ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 782 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCC 841 Query 817 TTCGCTACCAACTTCGTCCCCGGAAAGTGAG 847 || || |||||||| || ||||||||||||| Sbjct 842 TTTGCCACCAACTTTGTTCCCGGAAAGTGAG 872 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48325249414 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5