BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482436
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34720.1 | Symbols: NF-YA4 | nuclear factor Y, subunit A4 | ... 1502 0.0
AT1G30500.2 | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | ... 303 1e-81
> AT2G34720.1 | Symbols: NF-YA4 | nuclear factor Y, subunit A4
| chr2:14649767-14651627 REVERSE LENGTH=958
Length=958
Score = 1502 bits (813), Expect = 0.0
Identities = 920/970 (95%), Gaps = 14/970 (1%)
Strand=Plus/Plus
Query 1 AACGATTTTCTGAGGGTAAGATCCAGAGATTGATTGAATCAGCTTAATACTTTT-TATAA 59
||| |||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 1 AACAATTTTCTGAGGGTAAGATCCAGAGATTGATTGAATCAGCTTACTA-TTTTATATAA 59
Query 60 TTCAGTTTATTGTTACTCAGACTTGTAACTAGGACAGTCTTCTCATGAATCATGACTTCT 119
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCAGTTTGTTGTTCCTCAGACTTGTAACTAGGACAGTCTTCTCATGAATCATGACTTCT 119
Query 120 TCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAAGAAAGAACGTCCAGATTCC 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 TCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGCGAAGAAAGAACGTCCAGATTCC 179
Query 180 CAAACAAGACCACAGATTCCTTCAGGACGAAGTTCGGAATCTATTGATACAACAAACTCT 239
||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 180 CAAACCCGACCACAGGTTCCTTCAGGACGAAGTTCGGAATCTATTGATACAA-A--CTCT 236
Query 240 GTCTACTCAGAGCCCATGGCACATGGGCTATACCCGTATCCAGATCCTTACTACAGAAGC 299
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 GTCTACTCAGAGCCCATGGCACATGGATTATACCCGTATCCAGATCCTTACTACAGAAGC 296
Query 300 ATCTTTTCACAGCAAGCATATCTTCCACATCCCTATCCTGGGGTCCAATTGCAGTTAATG 359
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTCTTTGCACAGCAAGCGTATCTTCCACATCCCTATCCTGGGGTCCAATTGCAGTTAATG 356
Query 360 GGAATGCAACAGCCAGGAGTTCCATTGCAATGCGATGCAGTCGAGGAACCTGTTTTTGTT 419
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 GGAATGCAGCAGCCAGGAGTTCCATTGCAATGTGATGCAGTCGAGGAACCTGTTTTTGTT 416
Query 420 AACGCAAAGCAATACCACGGTATACTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCA 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AACGCAAAGCAATACCATGGTATACTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCA 476
Query 480 CGAAACAGAGCCATCAAGGCAAAGAAGCCATACATGCATGAATCTCGGCATTTACATGCG 539
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 477 CGAAATAGAGCCATCAAAGCAAAAAAGCCATACATGCATGAATCTCGGCATTTACATGCG 536
Query 540 ATAAGACGGCCAAGAGGATGTGGCGGACGGTTTCTCAATGCCAAGAAGAAAAATGGAGAC 599
||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 537 ATAAGACGGCCAAGAGGATGTGGTGGCCGGTTTCTCAATGCCAAGAAGGAAAATGGAGAC 596
Query 600 CACAAGGAGGAAGAGGAGGAGACAGCCTCTGATGAGAACACTTCAGAAGCAAGTTCCAGC 659
||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 597 CACAAGGAGGAGGAGGAGGC-A-A-CCTCTGATGAGAACACTTCAGAAGCAAGTTCCAGC 653
Query 660 CTCAGGTCTGAGAAAGTAGCCATGGCTGCTTCTGGTCCTAATGGTAGATCTTGAGGAAGG 719
|||||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 654 CTCAGGTCCGAGAAATTAGCTATGGCTACTTCTGGTCCTAATGGTAGATCTTGAGGAAGG 713
Query 720 TTCCTGCACAACCACAAGTTTAGTGTCTATTTTGGGTGGATGTTTGTCTCAGAGCATCAT 779
|| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 714 TTTCTGCACAACCACAAGTTTAGTTTCTATTTTGGGTGGATGTT---CTCAGGGCATCAT 770
Query 780 CGTCTTTAGTGTTTTTGGATACTCTGTGTATAGGTTATTTGCTAGGGTAA-CTTTGTTTT 838
|||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||
Sbjct 771 CGTCTTTAGTGTTTTTGGATACGCTGTGTACAGGTTATTTGCTAGGGTAAACTTTGTTTT 830
Query 839 AGTGATTAGAAATAAAACTAAGCAAAGAAATGAAAAGTGTGGTTGAAAGTATTGTTGTAC 898
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 831 AGCGATTAGAAATAAAACTAAGCAAAGAAATGAAAAGTGTGATTGGAAGTATTGTTGTAC 890
Query 899 CAAATTGATATTCTTTGCCAATGAACTCATATGTTTTGGAAAGTAAATTAATGTTCTTAG 958
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 891 CAAATTGATATTCTTTGCCAATGAACTCAT--GTTTTGGAAAGTAAATTAATGTTCTTAG 948
Query 959 CTTTGTTTGC 968
||||||||||
Sbjct 949 CTTTGTTTGC 958
> AT1G30500.2 | Symbols: NF-YA7 | nuclear factor Y, subunit A7
| chr1:10804450-10806319 REVERSE LENGTH=970
Length=970
Score = 303 bits (164), Expect = 1e-81
Identities = 400/508 (79%), Gaps = 39/508 (8%)
Strand=Plus/Plus
Query 101 CTCATGAATCATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAA 160
||||||| |||||||||||||| | |||||||| |||||||||| || |||||||| |||
Sbjct 102 CTCATGAGTCATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAA 161
Query 161 GAAAGAAC-GTCCAGATTCCCA-AACAAGACCA-CAGATTCCTTCAGGACGAAGTTCGGA 217
| |||||| | |||||| || | | |||| || || ||||| | | ||| || ||
Sbjct 162 GCAAGAACAG-AGAGATTCTCATTTCCA-ACCACCA-ATCCCTTCTGCAAGAAATTATGA 218
Query 218 ATCTATTGATACAA---CA---AACTCTG--TC---TACT-CAGAGCCCATGGCACATGG 265
||| |||| ||||| | |||| | | ||| || | ||||||||| |||
Sbjct 219 ATCAATTGTTACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGG 278
Query 266 GCTATACCCGTATCCAGATCCTTACTACAGAAGCATCTTTTCACAGCAAGCATATCTTCC 325
| ||| || |||||||||||||||||||||||||| ||| ||| | || | |||
Sbjct 279 ACAATATCCATATCCAGATCCTTACTACAGAAGCATATTTGCAC--C--GC----C-TCC 329
Query 326 ACATCCCTAT-CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAACAGCCAGGAGTTCCA 383
||| || ||| || ||||| | || | ||||| |||||| |||| || | ||| |||||
Sbjct 330 ACAACCGTATACC-GGGGTAC-ATCTACAGTTGATGGGAGTGCAGCAACAAGGCGTTCCT 387
Query 384 TTGCAATGC-GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTAT 442
|| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TTACCAT-CTGATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTAT 446
Query 443 ACTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCAC-GAA-ACAGAGCCATCAAGGCA 500
||| |||||||| ||||| | |||| ||||||| | | ||| | | || ||||||| ||
Sbjct 447 ACTAAGGCGCAGACAATCAAGAGCAAGACTTGAGTCTCAGAATA-A-AGTCATCAAGTCA 504
Query 501 AAG-AAGCCATACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATG 559
| ||||| || ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 505 C-GTAAGCCGTATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATG 563
Query 560 TGGCGGACGGTTTCTCAATGCCAAGAAG 587
|||||| |||||||| ||||||||||||
Sbjct 564 TGGCGGGCGGTTTCTAAATGCCAAGAAG 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5