BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482460
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34960.1 | Symbols: CAT5 | cationic amino acid transporter 5... 2933 0.0
> AT2G34960.1 | Symbols: CAT5 | cationic amino acid transporter
5 | chr2:14744037-14745961 REVERSE LENGTH=1925
Length=1925
Score = 2933 bits (1588), Expect = 0.0
Identities = 1760/1843 (95%), Gaps = 11/1843 (1%)
Strand=Plus/Plus
Query 1 AGAGAGAATGGATA-ATGAAGAGAGAGGATACTGGAGATGGAGCAAGAGTGATTTCTTTC 59
|||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 71 AGAGAGAATGGA-AGGTGAAGAGAGAGGATACTGGAGATGGAGCAAGAGAGATTTCTTTC 129
Query 60 CTGAGGAATCTTTCCAGAGCTTCGGAAGTTACAGAGCTGCTCTGTCTCGGACATGTTCCA 119
|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 130 CTGAGGAATCTTTCCAGAGCTTTGGTAGTTACAGAGCTGCTCTGTCTCAGACATGTTCCA 189
Query 120 GGTTCAAGAACAGGTTGGTTAGTAGGTCTGATGATGACAACGAGCGGTTTGAGCTCAAGA 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 190 GGTTCAAGAACAGGTTGGTTAGTAGGTCTGATGATGAGAACGAGCGGTTTGAGCTCAAGA 249
Query 180 AACAGAGCGAGCACGAGATGAAACGGTGTTTGACGTGGTGGGATTTAGTCTGGTTTGGAT 239
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 250 AACAGAGTGAGCACGAGATGAAACGGTGTTTGACATGGTGGGATTTAGTATGGTTTGGAT 309
Query 240 TCGGCTCGGTGATTGGAGCTGGAATCTTTGTCCTGACAGGTCAAGAAGCTCATGAGCAAG 299
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 310 TCGGGTCGGTGATTGGAGCTGGAATCTTTGTCTTGACAGGTCAAGAAGCTCATGAGCAAG 369
Query 300 CAGGACCAGCTATTGTCTTGTCTTATGTTGTTTCAGGTCTTTCTGCTATGCTCTCTGTCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 CAGGACCAGCTATTGTCTTGTCTTATGTTGTTTCAGGTCTTTCTGCTATGCTCTCTGTCT 429
Query 360 TCTGCTACACGGAATTCGCTGTGGAAATCCCCGTGGCTGGTGGTTCCTTCGCCTATTTAC 419
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 430 TCTGCTACACGGAATTCGCTGTGGAAATCCCTGTGGCTGGTGGTTCTTTCGCCTATCTAC 489
Query 420 GGATTGAGCTTGGGGATTTCGCGGCGTTCATCACTGCAGGGAATATACTTCTTGAGAGTA 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GGATTGAGCTTGGGGATTTTGCGGCGTTCATCACTGCAGGGAATATACTTCTTGAGAGTA 549
Query 480 TTGTTGGGACTGCAGCTGTTGCTAGAGCCTGGACTTCATATTTTGCAACTCTTCTGAATC 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTGTTGGAACTGCAGCTGTTGCTAGAGCCTGGACTTCATATTTTGCAACTCTTCTGAATC 609
Query 540 GTAGCCCGAACGCTCTACGGATCAAAACAGATCTCAGTTCTGGTTTTAATCTCTTGGATC 599
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 610 GTAGCCCGAACGCTCTACGGATCAAAACAGATCTCAGTTCCGGTTTTAATCTCTTGGACC 669
Query 600 CAATAGCTGTTGTGGTTATAGCCGCTTCAGCTACAATCGCATCGATCAGCACCCGAAAGA 659
||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 670 CAATAGCTGTTGTTGTTATAGCCGCTTCAGCTACAATTGCATCGATCAGCACAAGAAAGA 729
Query 660 CTTCATTGCTCAACTGGATAGCTTCTGCTATCAACACTTTAGTGATATTTTTTGTGATAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 730 CTTCATTGCTCAACTGGATAGCTTCTGCTATCAACACTTTAGTGATATTTTTTGTTATAA 789
Query 720 TTGCGGGTTTTATCCACGCCGACACATCAAATTTGACTCCATTCTTGCCTTATGGACCTG 779
| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 790 TCGCTGGTTTTATCCACGCCGACACATCAAATTTGACTCCATTCTTGCCTTTTGGACCTG 849
Query 780 AGGGAGTGTTCCGAGCAGCTGCAGTAGTGTACTTTGCATATGGAGGATTTGATAGCATAG 839
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 850 AGGGAGTGTTCCGAGCAGCTGCAGTTGTGTACTTTGCATATGGAGGATTTGATAGCATAG 909
Query 840 CAACAATGGCTGAAGAAACCAAGAATCCATCAAGAGACATACCAATCGGGTTACTCGGTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CAACAATGGCTGAAGAAACCAAGAATCCATCAAGAGACATACCAATCGGGTTACTCGGTT 969
Query 900 CAATGTCGATAATAACGGTGATATACTGCTTGATGGCATTATCCTTGAGTATGATGCAGA 959
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 CAATGTCGATAATAACAGTGATATACTGCTTGATGGCATTATCCTTGAGTATGATGCAGA 1029
Query 960 AGTATACAGATATAGATCCAAACGCAGCTTACTCGGTAGCGTTTCAGAGTGTTGGAATGA 1019
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1030 AGTATACAGATATAGATCCAAATGCAGCTTACTCAGTAGCGTTTCAGAGCGTTGGAATGA 1089
Query 1020 AATGGGGAAAGTACCTGGTGGCACTTGGTGCTCTCAAAGGGATGACCACAGTTCTTTTAG 1079
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AATGGGGAAAGTACTTGGTGGCACTTGGTGCTCTCAAAGGGATGACCACAGTTCTTTTAG 1149
Query 1080 TAGGAGCACTGGGACAAGCGCGATACGTCACTCACATTGCACGGACCCACATGATTCCGC 1139
|||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct 1150 TAGGAGCATTGGGACAAGCGAGATACGTTACTCACATCGCACGGACCCACATGATTCCGC 1209
Query 1140 CTATATTTGCCCTCGTCCATCCCAAAACAGGAACACCGATAAACGCTAACCTCCTAGTAT 1199
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 CTATATTTGCCCTTGTCCATCCCAAAACAGGAACACCGATAAACGCTAACCTCCTAGTAG 1269
Query 1200 CAATTCCAAGTGCTCTCATCGCTTTCTTTTCGGGTTTAGATGTTTTGACAAGCCTCTTAT 1259
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1270 CAATTCCAAGTGCTCTCATTGCTTTCTTTTCTGGTTTAGATGTTTTGGCAAGCCTCTTAT 1329
Query 1260 CGATAAGTACTCTCTTCATCTTCACAATGATGCCTATCGCACTACTTGTGAGGAGATACT 1319
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1330 CGATAAGTACTCTCTTCATCTTCACAATGATGCCTATCGCACTACTCGTGAGGAGATACT 1389
Query 1320 ACGTGAGACAAGTTACTCCAAGATTTCATCTCATTAAGCTCATCATTTGTCTCTTATTCA 1379
|||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1390 ACGTGAGACAAGATACTCCAAGAGTTCATCTCATTAAGCTCATCACTTGTCTCTTATTCG 1449
Query 1380 TTGTTGCTTCTTCAATGGGGACTTCGGCTTATTGGGGAATGCAGCTCAAGGGATCATGGA 1439
| |||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 1450 TCGTTGTTTCTTCAATGGGTACTTCGGCGTATTGGGGAATGCAGCGCAAGGGATCATGGA 1509
Query 1440 TCGGATACACAATAACCGTTCCTTTCTGGTTCTTGGGAACTTTGGGGATTGTATTCTTTG 1499
|||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1510 TCGGTTACACAGTAACAGTTCCTTTCTGGTTCTTGGGAACTTTGGGGATCGTATTCTTTG 1569
Query 1500 TTCCTCAGCAAAGAACACCGAAGGTGTGGGGCGTACCATTAGTCCCATGGCTCCCGTGCT 1559
||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1570 TTCCTCAGCAACGAACACCGAAAGTGTGGGGCGTACCGTTAGTGCCATGGCTCCCGTGCT 1629
Query 1560 TATCAATCGCAACAAACATCTTTCTGATGGGATCTTTGGGAGCAATGGCTTTTGTAAGGT 1619
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1630 TATCAATAGCAACAAACATCTTTCTCATGGGATCTTTGGGAGCAATGGCTTTTGTAAGGT 1689
Query 1620 TTGGGGTTTGCACTTTAGCCATGTTACTATACTATTTCCTGCTTGGTCTTCATGCAACAT 1679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TTGGTGTTTGCACTTTAGCCATGTTACTATACTATTTCCTGCTTGGTCTTCATGCAACAT 1749
Query 1680 TCGATATGGCTCATCAGCAAATTGTGCCAAGATCTTAATAACTATG-AAAACAGTGAAGA 1738
|||||||||||||||||||||||||||||||| | ||| ||||||| ||||||| |||||
Sbjct 1750 TCGATATGGCTCATCAGCAAATTGTGCCAAGAACATAACAACTATGGAAAACAGAGAAGA 1809
Query 1739 AATGTAACCTCTCAAAAGGTCTCTTCCTTCCACTCTAGTGTTATTCTGCATTCTAGCTTT 1798
|||||||||||| |||||||||||||||||||| ||||||||||||||| || | |||
Sbjct 1810 AATGTAACCTCTGAAAAGGTCTCTTCCTTCCACCCTAGTGTTATTCTGC-TT-T--CTT- 1864
Query 1799 CTTCATCAACTGCATCGTTCTGGAATCTCTGTAATCTGCAAAA 1841
| || |||||| |||||||| | ||||||||||||||||||
Sbjct 1865 C---ATGAACTGCTTCGTTCTGTATTCTCTGTAATCTGCAAAA 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91113989175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5