BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482500
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35370.1 | Symbols: GDCH | glycine decarboxylase complex H |... 1219 0.0
AT1G32470.1 | Symbols: | Single hybrid motif superfamily prote... 599 1e-170
> AT2G35370.1 | Symbols: GDCH | glycine decarboxylase complex H
| chr2:14891102-14892218 FORWARD LENGTH=803
Length=803
Score = 1219 bits (660), Expect = 0.0
Identities = 751/794 (95%), Gaps = 10/794 (1%)
Strand=Plus/Plus
Query 1 AATTTCTGCCTTACATATCAAAAGATAGAACACACACACAAATAAAGCAAACAAAGAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1 AATTTCTGCCTTACATATCAAAAGATAGAACACACACACAAATAAAGCAAAGAAACAGAA 60
Query 61 TATCTTTGAGATCTCCTCTTTATTTGGAGAAGACAAAACACAGAACAA-CA--AG---G- 113
|||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 61 TATCTTTGAGATCTCCTCTTTATTTGGAGAAGACAAAACACAGAACAAGAATTAGAAAGA 120
Query 114 A---AGAGAAAGCAAAAATGGCACTGAGAATGTGGGCTTCTTCTACAGCAAACGctctca 170
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 AGGGAGAGAAAGCAAAAATGGCACTAAGAATGTGGGCTTCTTCTACAGCAAACGCTCTCA 180
Query 171 agctttcttcttctgtttccaagtctcatctctctcctttctccatctctAGATGCTTCT 230
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AGCTTTCTTCTTCTGTTTCCAAGTCTCATCTCTCTCCTTTCTCCTTCTCTAGATGCTTCT 240
Query 231 CCACAGGGTTGGAGGGATTGAAGTATGCAAATTCACACGAGTGGGTTAAACATGAAGGCT 290
|||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CCACAGTTTTGGAGGGTTTGAAGTATGCAAATTCACATGAGTGGGTTAAACATGAAGGCT 300
Query 291 CTGTTGCCACCATTGGGATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTG 350
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGTTGCCACCATTGGCATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTG 360
Query 351 TGGAACTGCCAGAGGAAAATACTTCAGTGACCAAAGAGAAAAGCTTTGGAGCAGTGGAGA 410
| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TTGAACTGCCAGAGGACAATACTTCAGTGAGCAAAGAGAAAAGCTTTGGAGCAGTGGAGA 420
Query 411 GTGTGAAGGCCACAAGTGAGATCTTATCACCGATCTCAGGTGAAATCATTGAGGTTAACA 470
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 GTGTGAAGGCAACAAGTGAGATCTTATCACCAATCTCAGGTGAAATCATTGAGGTTAACA 480
Query 471 AGAAGCTCACAGAATCACCTGGCTTGATTAACTCAAGCCCTTATGAAGATGGCTGGATGA 530
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 481 AGAAGCTCACAGAATCACCTGGCTTGATCAACTCAAGCCCCTATGAAGATGGTTGGATGA 540
Query 531 TCAAAGTGAAACCGAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACA 590
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCAAAGTGAAACCAAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACA 600
Query 591 CCAAGTTCTGCGAGGAGGAAGACGCCGCTCACTAGGAGGGTTTCGCTCTGTCTTTTATGT 650
|||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 601 CCAAGTTCTGCGAGGAGGAAGATGCTGCTCACTAGGAGGGTTTCTCTCTGTCTTTTATGT 660
Query 651 TCCAAAATCTATCAATTCTCATGCTTATTTCCTAAATTTGCATACACTCTGTGACCAACA 710
||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 661 TCCAAGTTCTATCAATTCTCATGCTTGTTTTCTAAATTTGCATACACTCTATGACCAACT 720
Query 711 TCACAAAATAAGAGTTCAAGAAGATGAAACAGAGATCTAACAAACACATTGAGATTTTTT 770
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 721 TCACAAAATAAGAGTTCAAGAAGATGAAACAGAGACCTAACAAACACATTAAGATTTTTT 780
Query 771 CCATCATATAACTT 784
| ||||||| |||
Sbjct 781 CTTTCATATATCTT 794
> AT1G32470.1 | Symbols: | Single hybrid motif superfamily protein
| chr1:11739304-11740361 REVERSE LENGTH=791
Length=791
Score = 599 bits (324), Expect = 1e-170
Identities = 448/507 (88%), Gaps = 11/507 (2%)
Strand=Plus/Plus
Query 127 AATGGCACTGAGAATGTGGGCTTCTTCTACAGCAAACGctctcaagctttcttcttctgt 186
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 115 AATGGCACTGAGAATGTGGGCTTCCTCTACAGCAAATGCTCTCAAGCTCTCTTCTTCTGC 174
Query 187 ttccaagtctcatctc-t--ctcctttctccatctctAGATGCTTCTCCACAGGGTTGGA 243
||||| ||||||||| | | ||||||||||||| |||||||||||| ||| ||||||
Sbjct 175 CTCCAAATCTCATCTCTTGCCAGCTTTCTCCATCTCCAGATGCTTCTCCTCAGTGTTGGA 234
Query 244 GGGA-TTGAAGTATGCAAATTCACACGAGTGGGTTAAACATGAAGGCTCTGTTGCCACCA 302
||| || ||||||||||||||||| |||||||| |||||||||||||| ||||| || |
Sbjct 235 AGGACTT-AAGTATGCAAATTCACATGAGTGGGTGAAACATGAAGGCTCAGTTGCTACAA 293
Query 303 TTGGGATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTGTGGAACTGCCAG 362
|||| ||||||| |||||| |||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 294 TTGGTATCACTGACCATGCGCAGGACCATTTAGGAGAAGTTGTGTTTGTGGAGCTGCCTG 353
Query 363 AGGAAAATACTTCAGTGACCAAAGAGAAAAGCTTTGGAGCAGTGGAGAGTGTGAAGGCCA 422
| | ||| | |||||||| |||||| |||||||||||||| || |||||||| |||||||
Sbjct 354 AAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGAGCTGTTGAGAGTGTTAAGGCCA 413
Query 423 CAAGTGAGA-TCTTATCACCGATCTCAGGTGAAATCATTGAGGTTAACA-AGAAGCTCAC 480
||||||||| || |||| || ||||| |||||| ||||||||||||||| | ||||||||
Sbjct 414 CAAGTGAGATTC-TATCTCCAATCTCTGGTGAAGTCATTGAGGTTAACACA-AAGCTCAC 471
Query 481 AGAATCACCTGGCTTGATTAACTCAAGCCCTTATGAAGATGGCTGGATGATCAAA-GTGA 539
|| |||||||| ||||| ||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 472 CGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGATGGTTGGATGAT-AAAGGTGA 530
Query 540 AACCGAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACACCAAGTTCT 599
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 531 AACCGAGCAGCCCCGCGGAGTTGGAAGCTCTGATGGGTCCAAAGGAATACACCAAGTTCT 590
Query 600 GCGAGGAGGAAGACGCCGCTCACTAGG 626
|||| || |||||||| ||||||||||
Sbjct 591 GCGAAGAAGAAGACGCTGCTCACTAGG 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5