BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482518 Length=672 Score E Sequences producing significant alignments: (Bits) Value AT2G35605.1 | Symbols: | SWIB/MDM2 domain superfamily protein ... 924 0.0 > AT2G35605.1 | Symbols: | SWIB/MDM2 domain superfamily protein | chr2:14946063-14947276 FORWARD LENGTH=677 Length=677 Score = 924 bits (500), Expect = 0.0 Identities = 620/676 (92%), Gaps = 15/676 (2%) Strand=Plus/Plus Query 1 TTCAGCTTTCAAAGTCCGTG-GTTTGATCTAGGGTTTTAGACACAGAGCTCTCTCTCCTT 59 ||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct 11 TTCAGTTTTCAAAGTCTGTGAGTTTGATCTAGGGTTTTAG--ACAGAGCTCTCTCTCCTT 68 Query 60 CCAAATTCAAAACTGTGTGAAGAAGAAAAATGGCGACAGTTTCTAGGGTTTTTGGAGCTT 119 |||| |||||||||||||||||||| |||| | | | || |||||||| ||||||| Sbjct 69 CCAATTTCAAAACTGTGTGAAGAAG-AAAA-----A-A-TGTCGAGGGTTTTCGGAGCTT 120 Query 120 GCAGGGTACTGATGGCGAAGGCCGCTTCTTCCTCCGGCGCCAAAAATGGTAGACAAGGTA 179 |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| Sbjct 121 GCAGGGTACTGATGGCGAAGGCCGCTTCTTCCACCGGCGCTAAAACTGGTAGACAAGGTA 180 Query 180 CTGGTATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTACCTTTATTGGGGAAAACG 239 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 CTGGCATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTAATTTTATTGGGGAAAACG 240 Query 240 AAGTCTCTCGCACAACCGCCGTCAAGAAAATCTGGGAATACATCAAGCTTAACAATCTTC 299 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 AAGTCTCTCGCACAACTGCCGTCAAGAAAATCTGGGAATATATCAAGCTTAACAATCTTC 300 Query 300 AGAATCCGGAGAACAAAAGGGAGATACTATGCGATGAGCAACTGAAGACGATCTTCAGTG 359 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 301 AGAATCCGGTGAACAAAAGGGAGATACTATGCGATGAGCAACTCAAGACGATCTTCAGTG 360 Query 360 GGAAAGACACTGTCGGGTTCCTCGAGATCTCGAAACTTCTGTCTCAACATTTTCCTAAGT 419 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 361 GGAAAGACACTGTCGGGTTCCTCGAGATTTCAAAACTTCTGTCTCAACATTTTCCTAAGT 420 Query 420 CTGCTTGATTCTCACATTGCATTATCCTTAGCTTATTTTACTCTATCATCCAAGAAATGG 479 ||||||||||| ||||||||||| |||||||||| | ||||| |||||||||||||| || Sbjct 421 CTGCTTGATTCCCACATTGCATTTTCCTTAGCTTCTATTACTATATCATCCAAGAAACGG 480 Query 480 CTCTTCtttttttGTATCTTCTTATGGGTGATCTTTATTGGTTATATATAGACTACCAAC 539 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 481 TTCTTCTTTTTTTGTATCTTTTTATGGGTGATCTTTATTGGTTATATATAGACTACCAGC 540 Query 540 CAGTTCCCATCTGTCTGAGACGTTTTATGTATTGATGATGATCCAAGGTCAATTTAGTTT 599 |||||||||||||||| ||||| ||||||||| ||||||| | ||| |||||||||| | Sbjct 541 CAGTTCCCATCTGTCTTAGACGGTTTATGTATGGATGATGGTTCAAAGTCAATTTAGCTA 600 Query 600 ATGGT--TT-GTGGTCTTGGAGCTTGTCTATCTCTACTATAATCTTCTTCGATCTCAATG 656 ||||| || ||| ||||||| ||| | |||||||||||||||||||||| |||||||| Sbjct 601 ATGGTGGTTTGTG-TCTTGGAACTTTTTTATCTCTACTATAATCTTCTTCCATCTCAATA 659 Query 657 TGACATGGACTCCTTC 672 || ||||||||||||| Sbjct 660 TGGCATGGACTCCTTC 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32501493109 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5