BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482551
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35795.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 675 0.0
> AT2G35795.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr2:15042175-15043575 FORWARD LENGTH=726
Length=726
Score = 675 bits (365), Expect = 0.0
Identities = 542/618 (88%), Gaps = 50/618 (8%)
Strand=Plus/Plus
Query 1 CTGTGGATGAAACGAAGAAT-CTCAGATTTCTAAATGGCGACACCATTTATAGCGGGGGT 59
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 114 CTGTGGATGAAACGAAGAATCCT-AGATTTCTGAATGGCGACACCATTTATAGCGGGGGT 172
Query 60 TGCAGTAGCTGCAACTGCACTTGCTGGTAGATATGGAATCCAAGCATGGCAAGCATTCAA 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TGCAGTAGCTGCAACAGCACTTGCTGGTAGATATGGAATCCAAGCATGGCAAGCATTCAA 232
Query 120 GGCAAGGCCACCAAGGCCCAAAATTAAGAAATTCTATGACGGCGGTTTCCAGCCTACAAT 179
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 233 GGCAAGGCCACCAAGGCCCAAAATTAAGAAATTTTATGAGGGCGGTTTCCAGCCTACGAT 292
Query 180 GACGAAAAGGGAAGCTGCTCTTATTCTTGGCATCAGGGAGAATGTAGCGGCGGAGAAGGT 239
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||||
Sbjct 293 GACGAAAAGGGAAGCTGCTCTCATTCTTGGCGTCAGGGAGAGTGTAGCGGCGGAAAAGGT 352
Query 240 GAAGGAAGCACACAGGAAGGTAATGGTTGCAAACCATCCAGATGCAGGCGGTAGCCATTT 299
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 353 GAAGGAAGCACACAGGAAGGTAATGGTAGCAAACCATCCAGATGCAGGTGGTAGCCATTT 412
Query 300 CCTGGCTTCTAAGATCAATGAAGCTAAAGACGTGTTGCTCGGCAAAACTAAAAACAGCGG 359
||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 413 CCTAGCCTCTAAGATCAATGAAGCTAAAGACGTGATGCTAGGCAAAACTAAAAACAGCGG 472
Query 360 ATCCGCTTTTTGATGCATATTTCAATCAAAGAAGACT-CCATATGAATCATCTTATGTTA 418
||||||||||||||||| |||||||||||| | |||| || |||||||||||||||||||
Sbjct 473 ATCCGCTTTTTGATGCAAATTTCAATCAAA-A-GACTTCCTTATGAATCATCTTATGTTA 530
Query 419 TAG---T--A-TG-C----T--A-A----AT--TA-T--A-A-GCTTGTGGTCTGTTTGT 453
||| | | || | | | | || || | | | |||||||||||||||||
Sbjct 531 TAGGACTGTAATGTCAAAATGCAGATTTTATGCTAATTTATAAGCTTGTGGTCTGTTTGT 590
Query 454 GAGACACTAAAAGACTCGAATCTTTTCTTTCACTTGTGGTCGTTGAAAAGAA-A-AA--- 508
|| ||| |||| ||||||||||||||||||||||||| |||| ||||||||| | ||
Sbjct 591 GACACA-TAAA-GACTCGAATCTTTTCTTTCACTTGTTGTCGCTGAAAAGAACACAAAAA 648
Query 509 -------G----G-AGAAGGGCGTTTTAGTCTTTTTAGCTTCAAAAAA-TCCAGTAATAG 555
| | ||||||||||| ||||||||| | || |||||| |||||||||||
Sbjct 649 TAAAAACGCAAAGCAGAAGGGCGTTCTAGTCTTTTCGGTTTTAAAAAAATCCAGTAATAG 708
Query 556 AAACTGTAGTACACGTGT 573
||||| ||||||||||||
Sbjct 709 AAACTCTAGTACACGTGT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5