BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482558 Length=1795 Score E Sequences producing significant alignments: (Bits) Value AT2G35880.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 2488 0.0 > AT2G35880.1 | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr2:15062988-15065870 REVERSE LENGTH=1824 Length=1824 Score = 2488 bits (1347), Expect = 0.0 Identities = 1651/1793 (92%), Gaps = 40/1793 (2%) Strand=Plus/Plus Query 14 ACAGAGACTCGTCGCTCTTCGctttttcttctctctttcttt-t-ttAGCCAGTA--GTG 69 ||| |||||||||||||||||||||||||||||||||||||| | || ||||||| ||| Sbjct 41 ACA-AGACTCGTCGCTCTTCGCTTTTTCTTCTCTCTTTCTTTCTCTT-GCCAGTAGTGTG 98 Query 70 ATCTTACGAAGCTTTCTTTAGTAGAGAAAAAAGCATATACGCTTTGTTGTCTTTCTTAAT 129 |||||||||||| | |||||||||| ||||||||||||||| | |||||||||||||| Sbjct 99 ATCTTACGAAGC--T-TTTAGTAGAG-AAAAAGCATATACGC--T-TTGTCTTTCTTAAT 151 Query 130 CCGACTGATAAGTCCTCAGGATCAGATGGAAC-AATGGGTGGCTCCTCAAAACAAGAAGG 188 ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||| Sbjct 152 -CGACTGATAAGTCCTTAGGATCAGATGGAACAAATGGGTGGCTACTCAAAACAACAAGG 210 Query 189 TCCATCTTTAGTTTGATTGAGGGATTTGGATCTGACTGAACTGAATTCATCAACGTTGTC 248 ||||| |||||||||||| |||||||||||||||| | || | ||||||||| ||||| Sbjct 211 TCCATTTTTAGTTTGATTAAGGGATTTGGATCTGA--G--CTTACTTCATCAACTTTGTC 266 Query 249 GG-ATATACATTTGCTTTGTGTGAATTTGG-ATTTCTTGCCCTGAATGGCGTCCGAGGAT 306 || |||||||||||||||||||| |||||| | || | ||||||||||||||||||||| Sbjct 267 GGAATATACATTTGCTTTGTGTGGATTTGGAAGTT-GT-CCCTGAATGGCGTCCGAGGAT 324 Query 307 TTGAGTGTTGTTGCGGAATCAAAGAAAGGGGAAGAGAATGTTATTGTTGATAATTCCAAG 366 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 TTGAATATTGTTGCGGAATCAAAGAAAGGGGAAGAGAATGTTATTGTTGATAATTCCAAG 384 Query 367 GACATGACTAGACCTGAGAATCTTGACTTATCTACCGAGAAAGCTGATAATGTCAATGAG 426 ||||||| ||||||||||||||||||||||||||| |||||| |||||| || ||||||| Sbjct 385 GACATGAATAGACCTGAGAATCTTGACTTATCTACTGAGAAAACTGATACTGCCAATGAG 444 Query 427 AATGTTCCAAAAGATGAAGCTTCTAAGCTGCCAAAGGAAGCAGACCTCCCTGAGTCTGGT 486 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 445 AATGGTCCAAAAGATGAAGCTTCTAAGCTGGTAAAGGAAGCAGACCTCCCTGAGTCTGGT 504 Query 487 ACTTCAGTGAAGAGTAAAACAGCTAAGGATAGTAAACCTGTTAAGAGAAAGTCAGGGACC 546 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 505 ACTTCAGTGAAGAGTAAAACAGCTAAGGATAATAAACCTGTTAAGAGAAAGTCAGGGACG 564 Query 547 TTTTCTCGCAGCCCGAGATTCATGTCTCAGAGCTCTTCATTTCCAACCAAAGGAGCTTAT 606 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 565 TTTTCTCGGAGCCCGAGATTCATGTCTCAGAGCTCTTCATTTCCAACTAAAGGAGCTTAT 624 Query 607 ACTGATATTACTAGAAAGAGTATTGATGCAACAACATCAAAGACTAGTCTTAAACCCGTC 666 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 625 ACTGATATTACTAGAAAGAGCATTGATGCCACAACATCAAAGACTAGTCTTAAACCCGTC 684 Query 667 GTTGCAGGTGGATCCAAACCAAAAGCCACTCCATCTT-ATAGCAGCGGTGTTTTCACTAA 725 ||||| ||||||||||||||||||||||||||||||| | ||||||||||||| | | || Sbjct 685 GTTGCTGGTGGATCCAAACCAAAAGCCACTCCATCTTCA-AGCAGCGGTGTTTCCGCAAA 743 Query 726 GCGCACCGGTGTAGTATCTGCCCCCCTCAAAAAGCAAACTTTGCCGGTGAAACCCATTTC 785 ||||||| || |||||||||| || ||||||||||||||| |||| |||||| ||||||| Sbjct 744 GCGCACCAGTTTAGTATCTGCGCCTCTCAAAAAGCAAACTATGCCTGTGAAAACCATTTC 803 Query 786 TAGGGATTCAGCGTCAGGCCCTACTTCCAAATTAGAAGATGAAGGTTCTAAACCCATTAA 845 || |||| |||| |||||||||||||||||||||| |||||||||||||||| |||| || Sbjct 804 TAAGGATGCAGCTTCAGGCCCTACTTCCAAATTAGGAGATGAAGGTTCTAAATCCATCAA 863 Query 846 AGAAGAAACGGCGGGGAAAGACATTGAGGAAACCAGTTCAACCACCGCTGTGGTGGCAGA 905 ||||||||| |||||||| || | ||||| | | ||||||||||||||||||||||| Sbjct 864 AGAAGAAACTGCGGGGAAGGATGTCGAGGAGGCTGGATCAACCACCGCTGTGGTGGCAGA 923 Query 906 TAAAGTATCTAAACCGATGAAAGTTGAAATGGCAAGCAAGGAAGATGAGGATACACGTTC 965 |||||||||||| ||| |||||| |||||||||||||||||| || || || || ||||| Sbjct 924 TAAAGTATCTAACCCGTTGAAAGCTGAAATGGCAAGCAAGGACGACGAAGACACTCGTTC 983 Query 966 AACTACCACTTCAACTTCTACACCTCGTGGGCGGAGAAGCAGTGTTGGGTCGGCATCTGG 1025 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 984 AACTACCACTTCAACTTCTACACCTCGTGGGCGGAGAAGCAGTGTTGGATCGGCATCTGG 1043 Query 1026 ATTTTCGTTCAGGTTGGAGGAACGGGCTGAAAAAAGAAAAGAGTTTTATATGAAACTGGA 1085 |||||||||||||||||||||||||||||||||| | || ||||||||||||||||| || Sbjct 1044 ATTTTCGTTCAGGTTGGAGGAACGGGCTGAAAAACGGAAGGAGTTTTATATGAAACTAGA 1103 Query 1086 AGAGAAGATCCATGCAAAGGAAGTAGAGAAGACGAATTTGCAGGCGAAATCAAAGGAGAG 1145 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1104 AGAGAAGATCCATGCAAAGGAAGTAGAGAAGACCAATTTGCAGGCGAAATCAAAGGAGAG 1163 Query 1146 TCAGGAAGAAGAGATCAAAAGGTTGAGGAAGAGCTTGACGTTCAAGGCTGGTCCCATGCC 1205 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1164 CCAGGAAGAAGAGATCAAAAGGTTGAGGAAGAGCTTGACGTTCAAGGCTGGTCCCATGCC 1223 Query 1206 CAGCTTCTACAAAGAGCCTCCC-CCTAAGGTTGAATTAAAGAAGATACCAACTACTCGTC 1264 ||| ||||||||||| || ||| |||||||||||||| |||||||||||||||||||||| Sbjct 1224 CAGTTTCTACAAAGAACC-CCCACCTAAGGTTGAATTGAAGAAGATACCAACTACTCGTC 1282 Query 1265 CTAAATCTCCAAAGTTAGGACGCAGAAAGAGTAGTAGCGATGCAACAGGAGGTGAAGCGG 1324 |||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| | Sbjct 1283 CTAAGTCTCCAAAGCTAGGACGCAGAAAGAGTAGCAGTGATGCAACAGGAGGTGAAGCCG 1342 Query 1325 CTCCTCGTGTGACGAAACCAAAAGACTCATCATCATCTACACTGAAGAAACCCATAACAA 1384 ||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1343 CTCCTCGCGTGACAAAACCAAAAGACTCATCATCATCTACAGTGAAGAAACCAATAACAA 1402 Query 1385 AGTCTCAGTCaaagcttgaaactcaagagaagtcagtgaaggcgaaagaaaagaaaaagg 1444 |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1403 AGTCTCAGCCAAAGCTTGAAACTCAAGAGAAATCAGTGAAGGCCAAAGAAAAGAAAAAGA 1462 Query 1445 aagtgaagaaagaagaagtagagaagagaggagaggaagagaaggCTTCTCCTGCTGTGG 1504 |||||||||||||||||| ||||||||||||||| |||||||||||| || | | |||| Sbjct 1463 AAGTGAAGAAAGAAGAAGCAGAGAAGAGAGGAGAAGAAGAGAAGGCTACTGC--C-GTGG 1519 Query 1505 CTGCGAAACCTGAAGAGAAGAAACCGAACTCCAACAACATCCAAGTGAAGGCTGAGATAA 1564 ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1520 CTGCGAAACCTGAAGAGCAGAAACCAAACTCCAATAACATCCAAGTGAAGGCTGAGATAA 1579 Query 1565 TGGCAAGTGAGGTTGCAGTGGGAGGCTGATCTGAGCAAAGTGAGCATTTAGCAGCGATAT 1624 |||| |||||||||| ||||||||||||| ||||||| ||||||| ||||||||| | Sbjct 1580 TGGCGAGTGAGGTTGTAGTGGGAGGCTGA----AGCAAAGAGAGCATTCAGCAGCGATGT 1635 Query 1625 CCAATGTCTGCTTCTTCtttttttCTTTCTTAAAGCATTAATGTGAATAGAGTTGTTGCA 1684 | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1636 CTAATGTCTGCTTCTT-TTTTT--CTTTCTTAAAGCATTAATGTGAATAGAGTTGTTGCA 1692 Query 1685 TTGCGTCTACTTTTTTAAGAGTTTA--CTTCATTCCTTCAGTTTATTTTTTGGAAAATTA 1742 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1693 TTGCGTCTACTTTTTTAAGAGTTTATACTTCATTCCTTCAGTTTATTTTTTGGAAAATTA 1752 Query 1743 AAGCCTCAATTGCTTCTTAAGATGGTCTCTAATGTGTTGAGCTCAAAAATGTA 1795 | ||||| ||||||||||||||||||||| |||||||||| |||||| ||||| Sbjct 1753 A-GCCTCGATTGCTTCTTAAGATGGTCTCAAATGTGTTGAACTCAAATATGTA 1804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88804764105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5