BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482563 Length=1571 Score E Sequences producing significant alignments: (Bits) Value AT2G35930.1 | Symbols: PUB23 | plant U-box 23 | chr2:15082855-1... 2191 0.0 > AT2G35930.1 | Symbols: PUB23 | plant U-box 23 | chr2:15082855-15084473 REVERSE LENGTH=1619 Length=1619 Score = 2191 bits (1186), Expect = 0.0 Identities = 1344/1420 (95%), Gaps = 11/1420 (1%) Strand=Plus/Plus Query 1 CTAACTTATTCAAACCAATTCACATCTTCCCAAACCCAACTACTACAACTTGTAGCAAGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 CTAACTTATTCAAACCAATTCACATCTTCCCAAACCCAACTACTACAACTTGTATTAAGA 60 Query 61 AAAA-ATATATT-CTTTAGCTTCTTTGATCAATATATTCATCTGGGTTCTCGTCAAATAT 118 |||| ||||||| | |||||||||||||||||||||||| || ||||||||||| | | Sbjct 61 AAAAGATATATTCCCTTAGCTTCTTTGATCAATATATTCGTCAGGGTTCTCGTC--A-A- 116 Query 119 ATTCTTCAGCATCTTCATCATATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCT 178 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 AGTCCTCAGCATCTTCATCATATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCT 176 Query 179 CCGTTTTTCCTTTGCCCTATCTCTTTGGAGATCATGAAAGATCCGGTGATAGTGTCTACC 238 ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 177 CCGTTCTTCCTTTGTCCTATCTCTTTGGAGATCATGAAAGATCCAGTGATAGTCTCTACC 236 Query 239 GGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAA-AAAGAACTC 297 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 237 GGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAAGAAA-AACTC 295 Query 298 GTGTCCGGTCACCAAACAAGACATAATTACCGACGCGGATCTCACCCCGAATCACACTCT 357 |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 296 GTGTCCGGTCACCAAACAAGACAT-A--ACCGACGCGGATCTCACCCCGAATCACACTCT 352 Query 358 TCGCCGTCTCATCCAATCTTGGTGCACTCTAAACGCTTCCTATGGCGTCGAGAGGATCCC 417 |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 353 ACGCCGTCTCATCCAATCTTGGTGCACCCTAAACGCCTCCTACGGCGTCGAGAGGATCCC 412 Query 418 TACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTC 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 TACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTC 472 Query 478 TTCGCATCAAAACCAAGTCAAATCTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGC 537 ||| ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 473 TTCCCATGAAAACCAAGTCAAGTGTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGC 532 Query 538 GAACAACAAGCGGTGTTTAGAGGCGGCAGGAGTACCGGAGTTCTTGGCCAAGATCGTAAG 597 || ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 533 GACCAACAAGCGGTGTTTAGAGGCAGCGGGAGTACCGGAGTTCTTGGCCAACATCGTAAG 592 Query 598 CAACGAATCAGAAAATGAGAGTTTGACCGACGAAGCCCTCAACTTACTCTACCATCTCGA 657 |||||| |||||||||| |||||||||||||||||||||||||||||| ||||| ||||| Sbjct 593 CAACGACTCAGAAAATGGGAGTTTGACCGACGAAGCCCTCAACTTACTTTACCACCTCGA 652 Query 658 GACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAGGGTAATGATATCGTAAA 717 |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| Sbjct 653 GACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAAGATAACAATATCGTAAA 712 Query 718 GTCGTTGACGAAGATCATGGAGGGCGGGATCTACGAGTCCAGAGTCTATGCGACTTTGCT 777 ||||||||||||||||||| || | ||||| |||||||||||||||||||| |||||||| Sbjct 713 GTCGTTGACGAAGATCATGCAGCGTGGGATGTACGAGTCCAGAGTCTATGCCACTTTGCT 772 Query 778 TCTCAAGAACATTCTTGAAGTAGCGGATCCAATGCAGATTATGACCCTGAAGCCAGAGGT 837 ||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||| Sbjct 773 TCTCAAGAACATTCTCGAAGTAGCGGATCCAATGCAGAGTATGACTCTCAAGCCAGAGGT 832 Query 838 TTTCACTGAGGTCGTTCAGATCTTGGACGACCGCATCTCGCAGAAGGCTACCAAAGCTGC 897 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 833 TTTCACTGAGGTCGTCCAGATCTTGGACGACCGGATCTCGCAGAAGGCGACCAAAGCTGC 892 Query 898 GTTGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACATAAGGCCGTGGAAGC 957 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 893 CATGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACACAAGGCCGTGGAAGC 952 Query 958 TGGAGTGATCTCTGTGATAATCGAGCTTCTCATGGAGGAGAGCTTCACATCAGAGAGGAG 1017 |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 953 TGGAGTAATCTCTGTGATCATCGAGCTTCTCATGGACGAGAGCTTCACATCAGAGAGGAG 1012 Query 1018 AGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGC 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 AGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGC 1072 Query 1078 CTATTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTC 1137 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 CGAGTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTC 1132 Query 1138 GCAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCCAC 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1133 ACAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCAAC 1192 Query 1198 GCCTGCTTTGCTGCACGAGATGTTACAGTTGGGGGTTGTAGCAAAGCTTTGTCTTGTGCT 1257 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1193 GCCTGCTTTGTTGCACGAGATGTTACAGTTGGGGGTTGTAGCGAAGCTTTGTCTTGTGCT 1252 Query 1258 TCAAGTAAGCTGTGGGGGCAAGACTAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGC 1317 ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1253 TCAAGTAAGCTGTGGAGGTAAGACCAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGC 1312 Query 1318 TAGGGTTTGGAAGGACTCGCCTTGTTTGCCAAAAAACATGATTCTTGCGTATCCTTGCTG 1377 |||||| |||||||||||||||||| | |||||||||||||||||||| ||||| ||||| Sbjct 1313 TAGGGTCTGGAAGGACTCGCCTTGTCTCCCAAAAAACATGATTCTTGCATATCCCTGCTG 1372 Query 1378 ATGAAAACCAAGAAAACAACACAAACAAGTCCAATTCTCA 1417 |||||||| |||||||||| |||||||||||||||||||| Sbjct 1373 ATGAAAACGAAGAAAACAATACAAACAAGTCCAATTCTCA 1412 Score = 111 bits (60), Expect = 2e-23 Identities = 146/182 (80%), Gaps = 28/182 (15%) Strand=Plus/Plus Query 1418 ATGCTGTTGAAAAAACT--A-GTG-A-T--A-TATTCATATCATTAATCCAATTTTCCTT 1469 ||||||||||||||||| | | | | | | |||||||||||||||||||||||||||| Sbjct 1438 ATGCTGTTGAAAAAACTAAAGGAGTATTCAATTATTCATATCATTAATCCAATTTTCCTT 1497 Query 1470 AGGTTTCTTATGT--T-C-----A----C--AATGTAGATAATAGTGAAAAATGTTCATC 1515 ||||||||||| | | | | | |||||||||||||||| |||||||||||| Sbjct 1498 AGGTTTCTTATTTCGTACTTTTGATGTTCTCAATGTAGATAATAGTGGAAAATGTTCATC 1557 Query 1516 GAATATTCTTTT--ATGAAAAACTACAAAGATATCA-ATA-AA--TCACCAGTTACAAGG 1569 |||||| |||| |||||||||| ||||||||||| ||| || |||| |||||| ||| Sbjct 1558 AAATATTTTTTTTTATGAAAAACTGCAAAGATATCATATATAAAATCACAAGTTACCAGG 1617 Query 1570 CT 1571 || Sbjct 1618 CT 1619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77559842025 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5