BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482563

Length=1571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35930.1 | Symbols: PUB23 | plant U-box 23 | chr2:15082855-1...  2191    0.0  


> AT2G35930.1 | Symbols: PUB23 | plant U-box 23 | chr2:15082855-15084473 
REVERSE LENGTH=1619
Length=1619

 Score = 2191 bits (1186),  Expect = 0.0
 Identities = 1344/1420 (95%), Gaps = 11/1420 (1%)
 Strand=Plus/Plus

Query  1     CTAACTTATTCAAACCAATTCACATCTTCCCAAACCCAACTACTACAACTTGTAGCAAGA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  1     CTAACTTATTCAAACCAATTCACATCTTCCCAAACCCAACTACTACAACTTGTATTAAGA  60

Query  61    AAAA-ATATATT-CTTTAGCTTCTTTGATCAATATATTCATCTGGGTTCTCGTCAAATAT  118
             |||| ||||||| | |||||||||||||||||||||||| || |||||||||||  | | 
Sbjct  61    AAAAGATATATTCCCTTAGCTTCTTTGATCAATATATTCGTCAGGGTTCTCGTC--A-A-  116

Query  119   ATTCTTCAGCATCTTCATCATATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCT  178
             | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117   AGTCCTCAGCATCTTCATCATATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCT  176

Query  179   CCGTTTTTCCTTTGCCCTATCTCTTTGGAGATCATGAAAGATCCGGTGATAGTGTCTACC  238
             ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  177   CCGTTCTTCCTTTGTCCTATCTCTTTGGAGATCATGAAAGATCCAGTGATAGTCTCTACC  236

Query  239   GGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAA-AAAGAACTC  297
             |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  237   GGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAAGAAA-AACTC  295

Query  298   GTGTCCGGTCACCAAACAAGACATAATTACCGACGCGGATCTCACCCCGAATCACACTCT  357
             |||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||
Sbjct  296   GTGTCCGGTCACCAAACAAGACAT-A--ACCGACGCGGATCTCACCCCGAATCACACTCT  352

Query  358   TCGCCGTCTCATCCAATCTTGGTGCACTCTAAACGCTTCCTATGGCGTCGAGAGGATCCC  417
              |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct  353   ACGCCGTCTCATCCAATCTTGGTGCACCCTAAACGCCTCCTACGGCGTCGAGAGGATCCC  412

Query  418   TACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTC  477
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413   TACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTC  472

Query  478   TTCGCATCAAAACCAAGTCAAATCTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGC  537
             ||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct  473   TTCCCATGAAAACCAAGTCAAGTGTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGC  532

Query  538   GAACAACAAGCGGTGTTTAGAGGCGGCAGGAGTACCGGAGTTCTTGGCCAAGATCGTAAG  597
             || ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct  533   GACCAACAAGCGGTGTTTAGAGGCAGCGGGAGTACCGGAGTTCTTGGCCAACATCGTAAG  592

Query  598   CAACGAATCAGAAAATGAGAGTTTGACCGACGAAGCCCTCAACTTACTCTACCATCTCGA  657
             |||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct  593   CAACGACTCAGAAAATGGGAGTTTGACCGACGAAGCCCTCAACTTACTTTACCACCTCGA  652

Query  658   GACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAGGGTAATGATATCGTAAA  717
             |||||||||||||||||||||||||||||||||||||||||| | |||  ||||||||||
Sbjct  653   GACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAAGATAACAATATCGTAAA  712

Query  718   GTCGTTGACGAAGATCATGGAGGGCGGGATCTACGAGTCCAGAGTCTATGCGACTTTGCT  777
             ||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||||||
Sbjct  713   GTCGTTGACGAAGATCATGCAGCGTGGGATGTACGAGTCCAGAGTCTATGCCACTTTGCT  772

Query  778   TCTCAAGAACATTCTTGAAGTAGCGGATCCAATGCAGATTATGACCCTGAAGCCAGAGGT  837
             ||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||
Sbjct  773   TCTCAAGAACATTCTCGAAGTAGCGGATCCAATGCAGAGTATGACTCTCAAGCCAGAGGT  832

Query  838   TTTCACTGAGGTCGTTCAGATCTTGGACGACCGCATCTCGCAGAAGGCTACCAAAGCTGC  897
             ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  833   TTTCACTGAGGTCGTCCAGATCTTGGACGACCGGATCTCGCAGAAGGCGACCAAAGCTGC  892

Query  898   GTTGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACATAAGGCCGTGGAAGC  957
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  893   CATGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACACAAGGCCGTGGAAGC  952

Query  958   TGGAGTGATCTCTGTGATAATCGAGCTTCTCATGGAGGAGAGCTTCACATCAGAGAGGAG  1017
             |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct  953   TGGAGTAATCTCTGTGATCATCGAGCTTCTCATGGACGAGAGCTTCACATCAGAGAGGAG  1012

Query  1018  AGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGC  1077
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1013  AGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGC  1072

Query  1078  CTATTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTC  1137
             | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1073  CGAGTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTC  1132

Query  1138  GCAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCCAC  1197
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1133  ACAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCAAC  1192

Query  1198  GCCTGCTTTGCTGCACGAGATGTTACAGTTGGGGGTTGTAGCAAAGCTTTGTCTTGTGCT  1257
             |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1193  GCCTGCTTTGTTGCACGAGATGTTACAGTTGGGGGTTGTAGCGAAGCTTTGTCTTGTGCT  1252

Query  1258  TCAAGTAAGCTGTGGGGGCAAGACTAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGC  1317
             ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct  1253  TCAAGTAAGCTGTGGAGGTAAGACCAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGC  1312

Query  1318  TAGGGTTTGGAAGGACTCGCCTTGTTTGCCAAAAAACATGATTCTTGCGTATCCTTGCTG  1377
             |||||| |||||||||||||||||| | |||||||||||||||||||| ||||| |||||
Sbjct  1313  TAGGGTCTGGAAGGACTCGCCTTGTCTCCCAAAAAACATGATTCTTGCATATCCCTGCTG  1372

Query  1378  ATGAAAACCAAGAAAACAACACAAACAAGTCCAATTCTCA  1417
             |||||||| |||||||||| ||||||||||||||||||||
Sbjct  1373  ATGAAAACGAAGAAAACAATACAAACAAGTCCAATTCTCA  1412


 Score =  111 bits (60),  Expect = 2e-23
 Identities = 146/182 (80%), Gaps = 28/182 (15%)
 Strand=Plus/Plus

Query  1418  ATGCTGTTGAAAAAACT--A-GTG-A-T--A-TATTCATATCATTAATCCAATTTTCCTT  1469
             |||||||||||||||||  | | | | |  | ||||||||||||||||||||||||||||
Sbjct  1438  ATGCTGTTGAAAAAACTAAAGGAGTATTCAATTATTCATATCATTAATCCAATTTTCCTT  1497

Query  1470  AGGTTTCTTATGT--T-C-----A----C--AATGTAGATAATAGTGAAAAATGTTCATC  1515
             ||||||||||| |  | |     |    |  |||||||||||||||| ||||||||||||
Sbjct  1498  AGGTTTCTTATTTCGTACTTTTGATGTTCTCAATGTAGATAATAGTGGAAAATGTTCATC  1557

Query  1516  GAATATTCTTTT--ATGAAAAACTACAAAGATATCA-ATA-AA--TCACCAGTTACAAGG  1569
              |||||| ||||  |||||||||| ||||||||||| ||| ||  |||| |||||| |||
Sbjct  1558  AAATATTTTTTTTTATGAAAAACTGCAAAGATATCATATATAAAATCACAAGTTACCAGG  1617

Query  1570  CT  1571
             ||
Sbjct  1618  CT  1619



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 77559842025


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5