BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482567
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35960.1 | Symbols: NHL12 | NDR1/HIN1-like 12 | chr2:1510694... 1138 0.0
AT2G35970.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 763 0.0
AT4G09590.1 | Symbols: NHL22 | NDR1/HIN1-like 22 | chr4:6066128... 715 0.0
AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 453 1e-126
AT3G11660.1 | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3678835-3... 313 2e-84
> AT2G35960.1 | Symbols: NHL12 | NDR1/HIN1-like 12 | chr2:15106940-15107993
FORWARD LENGTH=1054
Length=1054
Score = 1138 bits (616), Expect = 0.0
Identities = 711/757 (94%), Gaps = 6/757 (1%)
Strand=Plus/Plus
Query 1 CTCACTCTCTCCATCACACATACATCTTCTCCATCCATTACACAACGAAGCATAGTGGCA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CTCACTTTCTCCATCACACATACATCTTCTCCATCCATTACACAACGAAGCATAGTGGCA 188
Query 61 AAGCCGTAAATACATAATACCAAT---GTCCAAAGATTGCGGGAACCACGGCGGCGGCGG 117
|| ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 189 AACCCGTAAATACATAATACCAATGACGACCAAAGATTGCGGAAACCACGGCGGCGGCGG 248
Query 118 CGGAGGAGGAACCGTCAGTCGAATCTGCGGAGCAATCATTGGCTTCATCATCATCGTCTT 177
||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 249 AGGAGGAGGAACCGCCAGTCGAATCTGCGGAGTAATCATCGGCTTCATCATCATCGTCTT 308
Query 178 GATAACAATCTTCCTCGTTTGGGTAATCCTCCAACCAACAAAACCAAGATTCATCCTCCA 237
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 309 GATAACAATATTCCTCGTTTGGATAATCCTCCAACCGACAAAACCAAGATTCATCCTCCA 368
Query 238 AGACGCCACCGTCTACGCCTTTAACCTCTCGCAACCTAACCTACTCACCTCAAACTTTCA 297
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 369 AGACGCCACCGTCTACGCCTTTAATCTCTCGCAGCCTAACCTCCTCACCTCAAACTTTCA 428
Query 298 GATCACAATCGCTTCACGTAACCGCAACTCCAGAATCGGAATCTACTACGACCGGCTTCA 357
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 429 GATCACGATCGCTTCACGTAACCGAAACTCAAGAATCGGAATCTACTACGACCGTCTTCA 488
Query 358 CGTCTACGCTAGTTACCGGAACCAGCAAATCACTTTACGTACAGCCATTCCTCCGACGTA 417
||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 489 CGTCTACGCTACTTACCGGAACCAACAAATCACTCTACGTACAGCAATTCCTCCGACGTA 548
Query 418 CCAAGGCCATAAAGAAGACAACGTTTGGTCTCCTTTTGTATACGGAAACTCCGTCCCTAT 477
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 549 CCAAGGCCATAAAGAAGACAACGTTTGGTCTCCTTTCGTTTATGGAAACTCCGTCCCTAT 608
Query 478 CGCTCCTTTCAACGCGGTGGCTCTTGGCGACGAGCAAAATCGCGGGTTTGTCACGTTGAT 537
||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 609 CGCTCCTTTCAACGCCGTGGCTCTCGGCGACGAGCAGAATCGTGGGTTTGTCACGTTGAT 668
Query 538 TATACGCGCCGATGGACGCGTGAGGTGGAAGGTCGGGACTCTTATTACAGGGAAGTATCA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TATACGCGCCGATGGACGCGTGAGGTGGAAGGTCGGGACTCTTATTACAGGGAAGTATCA 728
Query 598 TCTCCTTGTTCGTTGTCTCGCGTACATAAATCTGGCTGATAAAGCCGCCGGAGTTCATGT 657
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 729 TCTCCATGTTCGTTGTCAGGCGTTCATAAATCTGGCTGATAAAGCCGCCGGAGTTCATGT 788
Query 658 CGGCGAAAACGCCGTTAAGTACATGTTGGTCAATAAGTGCAGTGTCAATGTTTAGGAGGT 717
||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 789 CGGCGAAAACGCCGTCAAGTACATGTTGATCAATAAGTGCAGTGTCAATGTTTAGTAGGT 848
Query 718 AATAAAAGGACACAACTTTGACACCGTTAAAGTTTGC 754
|| || | ||||||||||||| |||| || ||||||
Sbjct 849 AA-AAT-G-ACACAACTTTGACGCCGTCAATGTTTGC 882
> AT2G35970.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:15109007-15109773
FORWARD LENGTH=767
Length=767
Score = 763 bits (413), Expect = 0.0
Identities = 595/680 (88%), Gaps = 24/680 (4%)
Strand=Plus/Plus
Query 87 CCAAAGATTGCGGGAACCACGGCGGCGGCGGCGGAGGA---GGAACCGTCAGTCGAATCT 143
||||||| ||||| |||||||| || ||||| |||||| ||||||| | || ||||||
Sbjct 8 CCAAAGAGTGCGGAAACCACGGTGGTGGCGGTGGAGGAGGCGGAACCGCCTGTAGAATCT 67
Query 144 GCGGAGCAATCATTGGCTTCATCATCATCGTCTTGATAACAATCTTCCTCGTTTGGGTAA 203
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 68 GTGGAGCAATCATCGGCTTCATCATCATCGTCTTGATGACAATCTTCCTCGTTTCGATAA 127
Query 204 TCCTCCAACC-AACAAAACCAAG-ATTCATCCTCCAAGACGCCACCGTCTACGCCTTTAA 261
|||||||||| || |||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 128 TCCTCCAACCGAA-AAAACC-AGAATTCATCCTCCAAGACACCACCGTCTACGCCTTTAA 185
Query 262 CCTCTCGCAACCTAACCTACTCACCTCAAACTTTCAGATCACAATCGCTTCACGTAACCG 321
||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 186 CCTCTCGCAGCCTAACCTCCTCACCTCAAAGTTTCAGATAACAATCGCTTCACGCAACCG 245
Query 322 CAACTCCAGA-ATCGGAATCTACTACGACCGGCTTCACGTCTACGCTAGTTACCGGAACC 380
||||||| | ||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 246 AAACTCCA-ACATCGGAATCTACTACGACCATCTTCACGCCTACGCTTCTTACCGGAACC 304
Query 381 AGCAAATCACTTTACG-TA-CAG-CCATTCCTCCGACGTACCAAGGCCATAAAGAAGACA 437
||||||||||| || | || | | || ||||||||||||||||| | || |||||| | |
Sbjct 305 AGCAAATCACTCTA-GCTAGC-GACC-TTCCTCCGACGTACCAAAGACACAAAGAAAATA 361
Query 438 ACGTTTGGTCTCCTTT-TGTATACGGAAACTC-CGTCCCTATCGCTCCTTTCAACGCGGT 495
||||||||||||||| | |||| |||||| | ||||||||||||||||||||||| ||
Sbjct 362 GCGTTTGGTCTCCTTTAT-TATATGGAAAC-CAAGTCCCTATCGCTCCTTTCAACGCCGT 419
Query 496 GGCTCTTGGCGACGAGCAAAATCG-CGGGTTTGTCACGTTGATTATACGCGCCGATGGAC 554
|||||| || |||||||| ||| | |||||| ||||||||| |||| ||| |||||||
Sbjct 420 GGCTCTCGGGGACGAGCAGAATAGTGGGGTTT-TCACGTTGACTATATGCGTTGATGGAC 478
Query 555 GCGTGAGGTGGAAGGTCGGGACTCTTATTACAGGGAAGTATCATCTCCTTGTTCGTTGTC 614
||||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||
Sbjct 479 GCGTGAGGTGGAAGGTCGGGACTCTTACTATAGGGAATTATCATCTCCATGTTCGTTGTC 538
Query 615 TCGCGTACATAAATCTGGCTGATAAAGCCGCCGGAGTTCATGTCGGCGAAAACGCCGTTA 674
|||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 539 AGGCGTTCATAAACCAGGCTGATAAAGCAGCCGGAGTTCATGTCGGCGAAAACACCGTTA 598
Query 675 AGTACATGTTGGTCAATAAGTGCAGTGTCAATGTTTAGGAGGTAATAAAAGGACACAACT 734
|||||| |||| |||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct 599 AGTACACGTTGATCAATAAGTGCAGTGTCAATTTTTAGGAGGTAA-AA--GGACACAACT 655
Query 735 TTGACACCGTTAAAGTTTGC 754
||||| |||| || ||||||
Sbjct 656 TTGACGCCGTCAATGTTTGC 675
> AT4G09590.1 | Symbols: NHL22 | NDR1/HIN1-like 22 | chr4:6066128-6066763
FORWARD LENGTH=636
Length=636
Score = 715 bits (387), Expect = 0.0
Identities = 557/637 (87%), Gaps = 19/637 (3%)
Strand=Plus/Plus
Query 87 CCAAAGATTGCGGGAACCACGGCGGCGGCGGCGGAGGA---GGAACCGTCAGTCGAATCT 143
||||||| ||||| |||||||| || ||||| |||||| ||||||| | || ||||||
Sbjct 8 CCAAAGAGTGCGGAAACCACGGTGGTGGCGGTGGAGGAGGCGGAACCGCCTGTAGAATCT 67
Query 144 GCGGAGCAATCATTGGCTTCATCATCATCGTCTTGATAACAATCTTCCTCGTTTGGGTAA 203
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 68 GTGGAGCAATCATCGGCTTCATCATCATCGTCTTGATGACAATCTTCCTCGTTTGGATAA 127
Query 204 TCCTCCAACCAACAAAACCAAG-ATTCATCCTCCAAGACGCCACCGTCTACGCCTTTAAC 262
|||||||||| | |||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 128 TCCTCCAACCGA-AAAACCCAGAATTCATCCTCCAAGACACCACCGTCTACGCCTTTAAC 186
Query 263 CTCTCGCAACCTAACCTACTCACCTCAAACTTTCAGATCACAATCGCTTCACGTAACCGC 322
|||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 187 CTCTCGCAGCCTAACCTCCTCACCTCAAAGTTTCAGATAACAATCGCTTCACGCAACCGA 246
Query 323 AACTCCAGA-ATCGGAATCTACTACGACCGGCTTCACGTCTACGCTAGTTACCGGAACCA 381
||||||| | ||||||||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 247 AACTCCA-ACATCGGAATCTACTACGACCATCTTCACGCCTACGCTTCTTACCGGAACCA 305
Query 382 GCAAATCACTTTACG-TA-CAG-CCATTCCTCCGACGTACCAAGGCCATAAAGAAGACAA 438
|||||||||| || | || | | || ||||||||||||||||| | || |||||||| |
Sbjct 306 GCAAATCACTCTA-GCTAGC-GACC-TTCCTCCGACGTACCAAAGACACAAAGAAGATAG 362
Query 439 CGTTTGGTCTCCT-TTTGTATACGGAAACTC-CGTCCCTATCGCTCCTTTCAACGCGGTG 496
||||||||| ||| | | |||| |||||| | ||||||||||||||||||||||| |||
Sbjct 363 CGTTTGGTCACCTCTCT-TATATGGAAAC-CAAGTCCCTATCGCTCCTTTCAACGCCGTG 420
Query 497 GCTCTTGGCGACGAGCAAAATCG-CGGGTTTGTCACGTTGATTATACGCGCCGATGGACG 555
||||| || |||||||| ||| | |||||| ||||||||| |||| ||| |||||||
Sbjct 421 GCTCTCGGGGACGAGCAGAATAGTGGGGTTT-TCACGTTGACTATATGCGTTGATGGACA 479
Query 556 CGTGAGGTGGAAGGTCGGGACTCTTATTACAGGGAAGTATCATCTCCTTGTTCGTTGTCT 615
||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||
Sbjct 480 AGTGAGGTGGAAGGTCGGGACTCTTACTATAGGGAATTATCATCTCCATGTTCGTTGTCA 539
Query 616 CGCGTACATAAATCTGGCTGATAAAGCCGCCGGAGTTCATGTCGGCGAAAACGCCGTTAA 675
|||| |||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 GGCGTTCATAAACCAGGCTGATAAAGCCGCCGGAGTTCATGTCGGCGAAAACACCGTTAA 599
Query 676 GTACATGTTGGTCAATAAGTGCAGTGTCAATGTTTAG 712
||||| |||| |||||||||||||||||||| |||||
Sbjct 600 GTACACGTTGATCAATAAGTGCAGTGTCAATTTTTAG 636
> AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:19450649-19451982
FORWARD LENGTH=970
Length=970
Score = 453 bits (245), Expect = 1e-126
Identities = 520/648 (80%), Gaps = 37/648 (6%)
Strand=Plus/Plus
Query 82 AATGTCCAAAGATTGCGGGAACCACGGCGGCGGCGGCGGAGGAGGAACCGTCAGTCG-AA 140
|||||| ||||||||||| ||||| ||| || ||| || || | |||| | | ||
Sbjct 101 AATGTCAAAAGATTGCGGTAACCA---CGGTGGTGGCAAAGAAGTAGTCGTCCG--GAAA 155
Query 141 -TCTGCGGAGCAATCATTGGCTTCATCATCATCG-TCTTGATAACAATCTTCCTCGTTTG 198
|||||| || || || | ||||||| | || | || | || || |||||||| |||||
Sbjct 156 CTCTGCGCCGCCATAATCGCCTTCATCGTAATAGTTC-TAATCACCATCTTCCTAGTTTG 214
Query 199 GGTAATCCTCCA-ACCAACAAAACCAAGATTCATCCTCCAAGACGCCACCGTCTACGCCT 257
||| || || || || || |||||||||||| |||||||||||||||||||||||||||
Sbjct 215 GGTCATACT-CAGGCCCACTAAACCAAGATTCGTCCTCCAAGACGCCACCGTCTACGCCT 273
Query 258 TTAACCTCTCGCAACCTAACCTACTCACCTCAAACTTTCA-GATCACAATCGCTTCACGT 316
| |||||||||||||| ||||| || || |||||||| || | |||||||||| || |||
Sbjct 274 TCAACCTCTCGCAACCAAACCTCCTTACTTCAAACTTCCAAG-TCACAATCGCATCTCGT 332
Query 317 AACCGC-AACTCCA-GAATCGGAATCTACTACGACCGGCTTCACGTCTACGCTAGTTACC 374
|||| | ||||||| || ||||||||||||||||||| || ||||||||||||| |||
Sbjct 333 AACC-CTAACTCCAAGA-TCGGAATCTACTACGACCGTCTCCACGTCTACGCTACATACA 390
Query 375 GGAACCAGCAAATCACTTTACGTACAGCCATTCCTCCGACGTACCAAGGCCATAAAGAAG 434
||||||||| |||||| ||||||| || |||||||||||||| |||||||| |||||||
Sbjct 391 TGAACCAGCAGATCACTCTACGTACGGCGATTCCTCCGACGTATCAAGGCCACAAAGAAG 450
Query 435 ACAACGTTTGGTCTCCTTTTGTATACGGAAACTCCG-T-CCCTATCGCTCCTTTCAACGC 492
|||||||||||||||||| || ||||| | || || | ||| ||||| |||| |||| |
Sbjct 451 TCAACGTTTGGTCTCCTTTCGTCTACGGGA-CTGCGGTTCCC-ATCGCACCTTACAACTC 508
Query 493 GGTGGCTCTTGGC-GACGAGCAAA-ATCGCGGGTTTGTCACG-TTGATTATACGCGCCGA 549
|| ||| |||| || ||| ||| |||| || ||||| | | ||||| |||||||||||
Sbjct 509 CGTCGCT-TTGGGAGAGGAG-AAAGATCGTGGATTTGT-AGGGTTGATGATACGCGCCGA 565
Query 550 TGG-ACGCGTGAGGTGGAAGGTCG-GGACTCTT-ATTACAGGGAAGTATCATCTCCTTGT 606
||| || |||||||||||| || | ||||| || || || || || |||||| ||| |||
Sbjct 566 TGGGAC-CGTGAGGTGGAAAGT-GAGGACT-TTGATCACCGGAAAATATCATATCCATGT 622
Query 607 TCGTTGTCTCGCGTACATAAATCT-GGCTGATAAAGCCGCCGGAGTTCATGTCGGCGAAA 665
||| |||| |||| ||| ||||| || | ||||| || || |||| |||||| || |
Sbjct 623 TCGGTGTCAGGCGTTCATCAATCTTGGAA-ACAAAGCTGCTGGTGTTCTTGTCGGTGATA 681
Query 666 ACGCCGTTAAGTACATGTTGG-TCAATAAGTGCAGTGTCAATGTTTAG 712
||||||||||||||| ||||| | ||||| |||||||| || ||||||
Sbjct 682 ACGCCGTTAAGTACACGTTGGCT-AATAAATGCAGTGTGAACGTTTAG 728
> AT3G11660.1 | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3678835-3679943
REVERSE LENGTH=1109
Length=1109
Score = 313 bits (169), Expect = 2e-84
Identities = 414/529 (78%), Gaps = 30/529 (6%)
Strand=Plus/Plus
Query 168 TCATCGTCTTGATAACAATCTTCCTCGTTTGGGTAATCCTCCAACCAACAAAACCAAGAT 227
||||| |||| |||||||| ||||| |||||| ||| ||||||||| |||| ||| | |
Sbjct 363 TCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACCATCAAAGCCACGCT 422
Query 228 TCATCCTCCAAGACGCCACCGTCTACGCCTTTAACCTCTC-G-CAA-CCT---AACCTAC 281
||||||||||||||||||||||||||||||| ||| |||| | ||| || ||||| |
Sbjct 423 TCATCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCC 482
Query 282 TCACCTCAAACTTTCAGATCACAATCGCTTCACGTAACCGC-AACTCCAGAATCGGAATC 340
||||||| ||||| || ||||| || |||| || |||| | ||| || |||||| ||
Sbjct 483 TCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACC-CTAACAACAAAATCGGCATT 541
Query 341 TACTACGACCGGCTTCACGTCTACGCTAGTTACCGGAACCAGCAAATCACTTTACGTACA 400
||||||||||||||| |||||||||||| |||||||| ||| ||||||||||| | |||
Sbjct 542 TACTACGACCGGCTTGACGTCTACGCTACTTACCGGAGCCAACAAATCACTTTCCCAACA 601
Query 401 GCCATTCCTCCGACGTACCAAGGCCATAAAGAAGACAACGTTTGGTCTCCTTTTGTATAC 460
| || ||||| ||||| || || || ||||| | | || | ||||| || ||||| |||
Sbjct 602 TCAATCCCTCCCACGTATCAGGGACACAAAGATGTCGACATCTGGTCGCCGTTTGTTTAC 661
Query 461 GGAAACTCCGT-CCCTATCGCTCCTTTCAACG-CGGTGGCTCTTGGCGAC-GAGCAAA-A 516
|||| |||||| ||| ||||||||||| |||| || | | ||||| | || || ||| |
Sbjct 662 GGAACCTCCGTTCCC-ATCGCTCCTTTTAACGGCGTTAG-TCTTGAC-ACCGAT-AAAGA 717
Query 517 TCGCGG-GTTTGTCACGTTGATTATACGCGCCGATGG-ACGCGTGAGGTGGAAGGTCGGG 574
| ||| || || |||||| || || || ||||| | | |||||||||||||| |||
Sbjct 718 TAACGGTGTC-GTTTTGTTGATCATTCGTGCTGATGGTA-GAGTGAGGTGGAAGGTTGGG 775
Query 575 ACTCTTATTACAGGGAAGTATCATCTCCTTGTTC-GTTGTCTC-GCGTACATAAA-T-CT 630
||| |||| || |||||||||||||| | ||| || ||| | || || ||||| | |
Sbjct 776 ACTTTTATCACCGGGAAGTATCATCTTCATGTGAAGT-GTC-CAGCATATATAAACTTC- 832
Query 631 GGCTGATAAAGCCGCCGGAGTTCAT-GTCGGCGAAAACGCCGTTAAGTA 678
|| | | ||||| ||||||| || ||||| || ||||||||||||||
Sbjct 833 GG-TAACAAAGCTAACGGAGTT-ATCGTCGGAGACAACGCCGTTAAGTA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5