BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482574
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor ... 1358 0.0
> AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor
3 | chr2:15119589-15123184 FORWARD LENGTH=1935
Length=1935
Score = 1358 bits (735), Expect = 0.0
Identities = 863/920 (94%), Gaps = 28/920 (3%)
Strand=Plus/Plus
Query 990 AATCAGAAATGGCTTTTTGTAACTGAAGAGGATATCAAGAGTTTACCAGGTTTCCAGAAC 1049
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AATCAG--ATGGCTTTTTGTAACTGAAGAGGATATCAAGAGTTTACCAGGTTTCCAGAAC 1092
Query 1050 CAGACTCTGATAGCCGTCAAAGCTCCTCATGGCACAACTTTGGAAGTGCCTGATCCAGAT 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CAGACTCTGATAGCCGTCAAAGCTCCTCATGGCACAACTTTGGAAGTGCCTGATCCAGAT 1152
Query 1110 GAAGCGGTTGACCACCCCCAAAGGAGATACAGGATCATTCTTAGAAGTACAATGGGACCT 1169
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 GAAGCGGCTGACCACCCACAAAGGAGATACAGGATCATTCTTAGAAGTACAATGGGACCT 1212
Query 1170 ATTGACGTATACCTCGTCAGCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGTT 1229
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1213 ATTGACGTATACCTCGTCAGCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGT 1272
Query 1230 GCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC 1332
Query 1290 ATCGAAGCCTTAACTGTTGATAACACAGGAACTGCTATTGAGCATCAGGTGTCTCATGAT 1349
|||||||||||||||||||| ||| ||| ||||||||||| | | | ||||||||
Sbjct 1333 ATCGAAGCCTTAACTGTTGACAACCCAGAAACTGCTATTG----T--G-T--CTCATGAT 1383
Query 1350 CATCCTCAACCTCAACCCGGCGATACCTCTGAACTTAATTATTTGCAGGAGCAGGTAGGA 1409
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1384 CATCCTCATCCTCAACCCGGCGATACCTCTGATCTTAATTATTTGCAAGAGCAAGTAGGA 1443
Query 1410 GGAATGCTTAAGATTACTCCCTCTGACGTCGAAAATGATGAATCGGACTACTGGCTACTC 1469
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 1444 GGAATGCTTAAGATTACTCCCTCTGATGTTGAAAATGATGAGTCGGACTACTGGCTTCTC 1503
Query 1470 TCAAGTGCTGAAATTAGCATGACAGATATATGGAAAACCGACTCTGGTATCGATTGGGAT 1529
|||| |||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1504 TCAAATGCTGAGATTAGCATGACGGATATTTGGAAAACTGACTCTGGTATCGATTGGGAT 1563
Query 1530 TATGGAATAGCCGACGTGAGTACTCCACCACCAGGAATGGGCGAAATAGCACCAACCGCT 1589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1564 TATGGAATAGCCGACGTGAGTACTCCACCACCAGGAATGGGCGAAATAGCACCAACAGCT 1623
Query 1590 GTTGACTCAACCCCGAGGTGATCCAATACCAAACACA-T-CT----T-CTGATCGCAAAT 1642
||||||||||||||||| ||||| |||||||| |||| | || | |||||| |||||
Sbjct 1624 GTTGACTCAACCCCGAGATGATCGAATACCAAGCACACTTCTCAACTTCTGATCCCAAAT 1683
Query 1643 GTGTTACCTCACAACACTCCC-AAAATTAAATACAAGGAGGGAGCAACTACAGAACGTGT 1701
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 1684 GTGTTACCTCACAACACTCCCTAAAATCATATACAAGGAGGGAGCAACTACAGAACGTGT 1743
Query 1702 ATGAACCAATGGCAGGTGCGTTCCATACAATGTGCCACCATTAGATTATGATTCATTTAT 1761
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1744 ATGAACCAATGGCAGGTGCGTTCCATACAATGT---ACCATTAGATTATGATTCATTTAT 1800
Query 1762 TGCCTAGAGTGATGTTGTAGAGGAGCACCGGTTACAAGAAACTAATGTAAGTTTAACAGA 1821
||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1801 CGCCTAGAGTGATGTTGTAGAGGAGCACCG---A---GAAACTAATGTAAGTTTAACAGA 1854
Query 1822 GAATGTACTTCATCGGCTGCATTGGTACACTATTTGATTATAATATTTTTGACCATTCAA 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1855 GAATGTACTTCATCGGCTGCATTGGTACACTATTTGATTATAATATTTTTGACCACTCAA 1914
Query 1882 ATGCATCTTCATAATCAGCT 1901
||||||||| ||||||||||
Sbjct 1915 ATGCATCTTTATAATCAGCT 1934
Score = 671 bits (363), Expect = 0.0
Identities = 480/532 (90%), Gaps = 26/532 (5%)
Strand=Plus/Plus
Query 426 TCACGGAAGAGAAAGTCGACAATGGATATGGTTGTTGCTCCATCTAATAATGGATTCACG 485
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCACGAAAGAGAAAGGCGACAATGGATATGGTTGTTGCTCCATCTAATAATGGATTCACG 585
Query 486 AGTTCTGGTTTCACTAGCATACCTAGCAGTCCCTGTCAAACTCCT-GCAAAAGGGGGCAG 544
|||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 586 AGTTCTGGTTTCACTAACATACCTAGCAGTCCCTGTCAAACTCCTAG-AAAAGGGGGCAG 644
Query 545 AGTCAACATCAAGTCAAAGGCCAAAGGAAATAAGTCAACTCCCCAAACACCCATCTCGAC 604
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 645 AGTCAACATCAAGTCAAAGGCCAAAGGAAACAAGTCAACTCCTCAAACACCCATCTCGAC 704
Query 605 GAACGCTGGTT--CTCCTGTGA-CACTTACTCCATCGGGAAGTTGCCGTTATGACAGTTC 661
|||||| ||| |||| | | | || || || | || | || | || |
Sbjct 705 AAACGCT-GTTAGATCCTTTTATGAAATA-TCTTTC----A--TGTC--TA-G--AG-T- 749
Query 662 TTTAGGTCTCCTTACAAAAAAGTTCGTCAATCTAATTAAACAAGCCAAAGATGGAATGCT 721
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AACAAGTCTCCTTACAAAAAAGTTCGTCAATCTAATTAAACAAGCCAAAGATGGAATGCT 809
Query 722 GGATCTAAACAAAGCTGCAGAAACATTGGAGGTGCAGAAACGACGTATATATGATATTAC 781
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GGACCTAAACAAAGCTGCAGAAACATTGGAGGTGCAGAAACGACGTATATATGATATTAC 869
Query 782 AAACGTTTTGGAGGGGATAGATCTCATCGAAAAGCCTTTCAAGAATCGAATACTTTGGAA 841
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 870 AAACGTTTTGGAGGGGATAGATCTCATTGAAAAGCCTTTCAAGAATCGAATACTTTGGAA 929
Query 842 GGGAGTTGATGCGAGTCCTGGCGATGAGGATGCTGACGTATCTGTATTACAG--GCAG-- 897
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 930 GGGAGTTGATGCGTGTCCTGGCGATGAGGATGCTGACGTATCTGTATTACAGCTGCAGGC 989
Query 898 A-AA-TTGAAAACCTTGCCCTCGAAGAGCAAGCGTTAGATAATCAAATCAGA 947
| || |||||||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 990 AGAAATTGAAAACCTCGCCCTCGAAGAGCAAGCATTAGACAACCAAATCAGA 1041
Score = 599 bits (324), Expect = 3e-170
Identities = 358/375 (95%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 51 tcttcctctttctctcACTAAAACCCTCGTTTCCTTCAATCGCCGTCGCTTTTCTCTTCA 110
||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |||
Sbjct 1 TCTTCCTCTTTCTCTCACTAAAACCCTTGTTTCCTTCACTCGCCGTCGCTTTTCCCGTCA 60
Query 111 TCGGAATCTTCAAATTCGAGTCTCGCTTCACTACGATCCATGTCCGGTCTCGTACGATCT 170
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TCGGAATCTTCAAATTCGACTCTCGCTTCACTACGATCCATGTCCGGTGTCGTACGATCT 120
Query 171 TCTCCCGGTTCTTCTCATCCGCCACCGCCGCCGCCGCACCATCCGCCGTCATCTCCGGTT 230
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TCTCCCGGTTCTTCTCAGCCGCCACCGCCGCCGCCGCACCATCCACCGTCATCTCCGGTT 180
Query 231 CCGGTTACATCTACGCCGGTTGTACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACA 290
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGGTTACATCTACGCCGGTTATACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACA 240
Query 291 AAACCGCCGTTTCATCCTTCGGATGATTACCATCGTTTTAACCCTTCTTCGCTCACTAAT 350
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct 241 AAACCTCCGTTTCATCCTTCCGATGATTACCATCGATTTAACCCTTCTTCGCTCAGTAAT 300
Query 351 AATAACGATAGGAGCTTCGTTAATGCTTGTGGTGTTGTAGATCGGGAGGAGGATGCTGTC 410
|||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 301 AATAACGACAGGAGCTTCGTTCATGGTTGTGGTGTTGTAGATCGGGAGGAAGATGCTGTC 360
Query 411 GTTGTTAGATCTCCT 425
|||||||||||||||
Sbjct 361 GTTGTTAGATCTCCT 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94126021875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5