BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482581 Length=883 Score E Sequences producing significant alignments: (Bits) Value AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr... 1055 0.0 AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | ch... 265 6e-70 > AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr2:15142677-15144182 REVERSE LENGTH=960 Length=960 Score = 1055 bits (571), Expect = 0.0 Identities = 763/845 (90%), Gaps = 56/845 (7%) Strand=Plus/Plus Query 1 CCCACTCCAATTCTCGTCGCACCAAT--AGTAATTCAACTGCCCC-AA-T--T-T-G-C- 50 |||||||||||||||||||||||||| ||||||||||||||||| || | | | | | Sbjct 3 CCCACTCCAATTCTCGTCGCACCAATAGAGTAATTCAACTGCCCCAAATTGCTCTCGACT 62 Query 51 ----ATTAGC-G-TTA--G--TGTG-TTTCGCATCAGAGAATCTCTCAGTTCTTGTCTTC 99 ||| | | ||| | |||| |||||||||||||||||||||| | ||| Sbjct 63 TTTTATTCTCGGATTAGCGTTTGTGCTTTCGCATCAGAGAATCTCTCA------G--TTC 114 Query 100 TCTCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAAC-C----CT-A----A 149 | ||||||||||||||||||||||||||||||||||||||||||| | || | | Sbjct 115 T-TCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAACTCAAATCTCACTTCA 173 Query 150 TC-AT-GACTCTTGGCTC-AGG---AGGATCAAGTGTTGTCGTTCCGAGGAATTTCAGGT 203 || || | || || ||| || |||||| |||||||||||||||||||||||| ||| Sbjct 174 TCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGTTCCGAGGAATTTCCGGT 233 Query 204 TGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAA 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 TGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAA 293 Query 264 TGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACA 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 TGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACA 353 Query 324 AC--A-CTGTACATGAGGGTCGAATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACC 380 || | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 354 ACGTAACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACC 413 Query 381 CTGAGAAACCCCCGACTGTTCGGTTCCATTCACGTATCAACATGACTTGTGTCAACCATG 440 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 414 CTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATG 473 Query 441 AAACCGGCGTGGTGGATTCGAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGGCAGTACA 500 | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 474 ATACCGGCGTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACA 533 Query 501 CAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGACTGCATCGCATAACCGGAAGC 560 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 534 CAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATAACCGGAAGC 593 Query 561 TTGTTCAACCTCCTGAAGGAACCTTCTTTTAATACTCTCAAAGCCTTTTACCTTTGAGGG 620 ||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 594 TTGTTCAACCTCCCGAAGGAACTTTCTTCTAATACTCTCAAAGCCT---ACCTTTGAGGG 650 Query 621 GCTTCTCCATTGTTGTTGATCTTCAAGCTTTTTCTTTCGTACCTAAAAGTAAAAACAATG 680 ||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| Sbjct 651 GCTTCTCCATTGTTG--G-TCTTCAAGCTTTT-CTTTCGTACCTTAAAGTAAAAACAATG 706 Query 681 GTGTCTGTGGATGAATGATGATGTTCGATTGATCATCTGGAGTTTAAATCCTTGTATGCA 740 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 707 GTGTCTGTCGATGAATGATGATGTTCGATTGATCATCTGGAGTTTAAATCCTTGTGTGCA 766 Query 741 AATATATCTAGACAACGTTGTCTCATGACTTCATCTTCTCAATTTAGATATAATATGGAA 800 ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| | Sbjct 767 AATATATCTAGACAACGCTGTCTCACGACTTCATCTTCTCAGTTTAGATATAATATGGGA 826 Query 801 AACAA 805 ||||| Sbjct 827 AACAA 831 Score = 89.8 bits (48), Expect = 4e-17 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 821 TTTACTGCACTTTTAGTCGACCTGAACTCTCCTATTGTGTTCACATTCGAGCGCAATTCA 880 |||||| | |||||| ||||||||||||||||||||||||||||||| || ||||||||| Sbjct 897 TTTACTTCGCTTTTATTCGACCTGAACTCTCCTATTGTGTTCACATTTGAACGCAATTCA 956 Query 881 TGC 883 ||| Sbjct 957 TGC 959 > AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | chr3:19494377-19496095 REVERSE LENGTH=937 Length=937 Score = 265 bits (143), Expect = 6e-70 Identities = 168/180 (93%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 148 AATCATGACTCTTGGCTCAGGAGGATCAAGTGTTGTCGTTCCGAGGAA-TTTCAGGTTGC 206 ||| ||||||||||||||||||||||| || ||||| ||||||||||| |||| ||||| Sbjct 138 AATTATGACTCTTGGCTCAGGAGGATCTAGCGTTGTTGTTCCGAGGAATTTTC-GGTTGT 196 Query 207 TGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGG 266 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 197 TGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGG 256 Query 267 ATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACA 326 |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| Sbjct 257 ATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACA 316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43100898126 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5