BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482590
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36145.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 891 0.0
> AT2G36145.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast
stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 13 growth stages; Has 49 Blast hits to 49 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr2:15168541-15169514 FORWARD LENGTH=732
Length=732
Score = 891 bits (482), Expect = 0.0
Identities = 594/645 (92%), Gaps = 19/645 (3%)
Strand=Plus/Plus
Query 1 TCACTATGTGAAGGACCCGAGAGTAGGAAAATGGCTTTCGCAGCAACGTCTCTCTTCGTT 60
|||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 1 TCACTATGTGAAGGACGCGACAGTAGGAAAATGGCTTTCGCAGCGACG---CTCTTCGTT 57
Query 61 CCACCTCCAGTAGTAACCGTCCGATCTCCGGCTAGATTCCTTCGCCGTCTCTCAATTCCT 120
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 58 CCACCTCCAGTAG---CCGTCCGATCTCCGGCTAGATTCCTTGGCCGTCTCTCAATTCCT 114
Query 121 TG-C--CT----G--CTTCCGACGAATGGCGCAACGAGTCGCCGGCAAATAAAGAGGGCA 171
|| | || | |||||||| ||||| ||| |||||| ||||||| | |||||||||
Sbjct 115 TGCCTGCTCCAAGTTCTTCCGACTAATGGTGCAGCGAGTCCCCGGCAAGTGAAGAGGGCA 174
Query 172 ATTGTAGCAAATGCTTCATCGGGAAACGGTGGCGTTAAGGCAGAGGGAGAAGATGGAGTT 231
||||||||||||||||| |||||||||||||||||||||| |||| |||||| ||||||
Sbjct 175 ATTGTAGCAAATGCTTCGCCGGGAAACGGTGGCGTTAAGGCCGAGGAAGAAGACGGAGTT 234
Query 232 TCTCTGGGTACAATGAAGCTTCCCGCGA-ATACCGATCTCGCGAGATTCGAAACTCTTCT 290
||||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 235 TCTCTGGGTACTATGAAGCTTCCCG-TAGATACCGATCTCGCTAGATTCGAAACTCTTCT 293
Query 291 CTTTCAGTGGGCCAACAGTCTTTGCCAAGGAGCCAATCTACCTCTTCCTGTTCCTCTCAA 350
||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 294 ATTTCAGTGGGCGAATAGTCTTTGCCAAGGAGCCAATCTACCTCTACCTGTTCCTCTCAA 353
Query 351 GGTGGATAGAATAAGTGGAGGAGCGAGGTTAGGATTCATAGTGATGGAAGATGAAGGCAA 410
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GGTGGACAGAATAAGCGGAGGAGCGAGGTTAGGATTCATAGTGATGGAAGATGAAGGCAA 413
Query 411 GACCGATGTTCCTGTTTACATTGACTGTTTGGTTTTCCAAACAACAGAGAATGGTTTAGT 470
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 414 GACCGATGTTCCGGTTTACATTGACTGTTTGGTTTTCCAAACAACAGAGAATGGTGTAGT 473
Query 471 GTTCCAAGCGACGCGTAATGGGCGGAAGAAAGATAAAGCACCTCCGGGAGAAGAAAGAAT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTTCCAAGCGACGCGTAATGGGCGGAAGAAAGATAAAGCACCTCCGGGAGAAGAAAGAAT 533
Query 531 CATGAGAAGTCTCTTAGGAGCTCTCAAAAAAGCTGTTGAGATTGCTCGAGTCACATAAAC 590
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 534 CATGAGAAGTCTCTTAGGAGCCCTCAAAAAAGCTGTGGAGATTGCTCGAGTCACATAAAC 593
Query 591 AATTTGCCCTCTTTCAATTTAAATTGAATTTCGAATATCTCTTTT 635
| |||||| ||||||| || ||| ||||||||||||||||||||
Sbjct 594 A-TTTGCC-TCTTTCAGTTGAAACCGAATTTCGAATATCTCTTTT 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32903366285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5