BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482594 Length=1150 Score E Sequences producing significant alignments: (Bits) Value AT2G36220.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1555 0.0 > AT2G36220.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52710.1); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15192480-15193698 FORWARD LENGTH=1219 Length=1219 Score = 1555 bits (842), Expect = 0.0 Identities = 1006/1084 (93%), Gaps = 16/1084 (1%) Strand=Plus/Plus Query 31 CTCTCTATGCCACAAGTCGATCTAGAAGCCTTTGTTTCTTCAGTATGTGTCGGTGGCTCC 90 ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 71 CTCTCTATGCCACAAGTCGATATAGAAGCCTTTGTTTCTTCAGTATGCATCGGTGGCTCC 130 Query 91 GATCACCGGAAGATCGCATGCGAAACCCTCGCCGACGAC-CAGACGATCCCACCTTATTA 149 || ||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||| Sbjct 131 GACCACCGCAAGATCGTATGCGAAACCCTCGCCGACGACTCA-ACGATCCCACCTTATTA 189 Query 150 CAACAACTCCGCCGTGAGTCCGAGTGATTTTCCACCGGAATCTTATTTCTTGTCAAAAGA 209 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct 190 CAACAACTCCGCCGTTAGTCCGAGTGATTTCCCACCGGAATCTTATTTCTTGTCAAACGA 249 Query 210 TGCTCAGCTCGAGTGGCTCAGCGACAACGCCTTCTTTGATCGTAAAGATTCACAGAGAGG 269 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 250 TGCTCAGCTAGAGTGGCTCAGCGACAACGCCTTCTTTGATCGTAAAGACTCACAAAAAGG 309 Query 270 AAACTCTGGGATTCTCAATTCCAATCCAAACTCGAATCCAAGCTCGCAACGGTTTTTACT 329 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 310 AAACTCTGGGATTCTCAATTCTAATCCCAACTCGAATCCAAGCTCGCAACGGTTCTTACT 369 Query 330 AAAATCCAAAGCGTCGATCATCGGTTTACCGAAACCTCAGAAAACGTGTTTCAACGAGAC 389 ||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| | Sbjct 370 AAAATCCAAAGCGTCGATCATCGGTTTGCCTAAACCGCAGAAAACGTGTTTCAACGAGGC 429 Query 390 CAAGCAACGGAGACACGAC-GGCAAGAACCGAGTCATCCTGAAACGGGTCGGGTCACGGA 448 |||||||||||||||| | ||||||||||| |||||| ||||||||||||||||| ||| Sbjct 430 AAAGCAACGGAGACACG-CGGGCAAGAACCGGGTCATCTTGAAACGGGTCGGGTCAAGGA 488 Query 449 TAAAAACGGATACTTCGCTTCTTGAACCTTCTTCTCCTATAGTCTCTTGCATCGGTAGAG 508 |||| ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 489 TAAAGACGGATATTTCGCTTCTGGAACCTTCTTCTCCTAAAGTCTCTTGCATCGGTAGAG 548 Query 509 TGAAATCCAGAAGAGAACGCAGCCGCCGTATGCACCGTCAAAAATCAAGTCGGGTCGAAC 568 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 TGAGATCCAGAAGAGAACGCAGCCGCCGTATGCACCGTCAAAAATCAAGTCGGGTCGAAC 608 Query 569 CGGCGAACCGGGTTAAGAAATCCGGGTTTATGGCGAGTTTCAGAGCCATCTTCAGGATCA 628 ||| ||||||||||||||| ||||||||||||||||||||||||| || |||||||||| Sbjct 609 CGGTAAACCGGGTTAAGAAACCCGGGTTTATGGCGAGTTTCAGAGCTATTTTCAGGATCA 668 Query 629 AAGGCGGCTGCAAAGACGTGTCAGCGCGTGAGACTCACACGTCGCCAAGTAACACACAGG 688 |||||||||||||||||||||||||||||||||||||||||||| | || |||||||| | Sbjct 669 AAGGCGGCTGCAAAGACGTGTCAGCGCGTGAGACTCACACGTCGACGAGAAACACACACG 728 Query 689 ACATCAGGAGCAGGCTTCCGGTGGAAGCTGTTGAGAAGTC-GTCATTCGACGGCGGAGAA 747 ||||||||||| | ||||| | |||||||| ||||||||| || |||||||||||||||| Sbjct 729 ACATCAGGAGCCGACTTCCTGCGGAAGCTGATGAGAAGTCGGT-ATTCGACGGCGGAGAA 787 Query 748 CCGGTGGTACCCGGTTTGGGTGGGATGACGCGTTTCGCATCTGGAAGAAGAGCGGATTTG 807 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 788 CCGGTGGTACCCGGTTTGGGTGGGATGACGCGTTTCGCATCTGGTAGAAGAGCGGATTTG 847 Query 808 TTGGCTGGTGGAGGATGTTGACGTGGCGCGTGTGACAAGTGTAATACATGTCGGGTCCAG 867 |||| |||||||||||||||||| |||| | ||||||||||||||||||| |||||||| Sbjct 848 TTGGGTGGTGGAGGATGTTGACGCGGCG-GA-TGACAAGTGTAATACATGTGGGGTCCAG 905 Query 868 TTATCTAGTGTTTTTAAGTCTCAGGGGGAAAGTAGAA-A--TAGTACTTTGGTTGTCTTG 924 |||| ||||||||| ||||| |||||||||||||||| | ||||||||| ||||||||| Sbjct 906 TTATATAGTGTTTT-AAGTCCCAGGGGGAAAGTAGAAGAAATAGTACTTTAGTTGTCTTG 964 Query 925 TCTGAATATTTTG-GTGGTTGTAATTTTTGAAAAGTCGTTGGTGATGACGTGGCAACTGA 983 ||||| | ||||| |||| | |||| |||||||||||||||||||||||||| |||| Sbjct 965 TCTGATTTTTTTGAGTGGAACTCGTTTT-GAAAAGTCGTTGGTGATGACGTGGCAGCTGA 1023 Query 984 TCAACGttttt-ttCAGAAAGAAACACGGCAACGCGAAAGCGGTGATTTCACACCCACCG 1042 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 TCAACGTTTTTATTCAGAAAGAAACACGGCAACGCGAAAGCGGTGATTTCACACCCACCG 1083 Query 1043 CACTGTTTTTGTTTTCTTCTAGTTTCCGTTGTATATAGTT-AGTTTAAATGTTATTATAT 1101 |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1084 CACTGTTTTTGTATTCTTCTAGTTTCCGTTGTAAATAGTTCAGTTTAAATGTTATTATAT 1143 Query 1102 TTGT 1105 ||| Sbjct 1144 CTGT 1147 Score = 52.8 bits (28), Expect = 7e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1 AAAATATCAAAAGCTTTCACATTACAAT 28 |||||||||||||||||||||||||||| Sbjct 21 AAAATATCAAAAGCTTTCACATTACAAT 48 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56425412580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5